BAC Information

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BAC

Clone NameB6Ng01-072O06
Chromosome4 (Build37)5 (Build37)
Map Location 22,599,519 - 22,600,70818,084,617 - 18,084,826
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePrdm13, Ccnc, 2610029I01Rik, Usp45, 4930528A17Rik, 5730406M06Rik, Coq3, 6230409E13Rik, LOC100040379, Fbxl4, Pou3f2, LOC664911
Downstream gene1700025O08Rik, LOC625462, LOC383998, LOC100040464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072O06.bB6Ng01-072O06.g
ACCDH890176DH890177
length1,172967
definitionDH890176|Mus musculus domesticus DNA, BAC clone: B6Ng01-072O06, 5' end.DH890177|Mus musculus domesticus DNA, BAC clone: B6Ng01-072O06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(22,599,519 - 22,600,708)(18,084,617 - 18,084,826)
sequence
gaattcacatttccaccagaatgtaagggctcccttctcttctcatcctc
atcctcatatagtgtttcctaatagattgaaattctgttagaatgttgag
gaaaaaacctcaatgtcgttttaatttataattctttaatgtatagagaa
aaacctgaattttcttcatccaatggcgagaagtgggcctttgctcctac
cttcttttatacatatgagatttgttttgattggcttgagcttgtggagg
tcttgcaaatgtcatagtaactataagctcatatgtgaagttaggaaatc
gttattccttgaagttaaccagcacctctaactcttagaggtttttgttc
ttgttgttgttcactctttcttagaatcctcaaccttcgtatcagaattc
tcctgtccaatcactttaagtattaatacaacaaggagtctgtgattgga
tagggaaaagggaggtggagcgaagagtttcagagacaaagacagaggag
aaaggaggagaagaaggaaggaagatggagcaggaagaagaagaagaccc
agattctgcgtggctttaaagagccacagatagatacataatataataag
aggactgaataattgggatagcttgtctaatctaggcgggcagcttgtat
cattaccacttggctctgaaattattgtgtgtgcagatgcataaattgct
agatttccccccataatgtagtctacctctttgcttagatgatgttcttc
ttgtgcagaagttcattgaggtcctattcattaattggtgttaatggtgc
tatcaaaattttattcagttgtgagagtagccaaccatgtctaatttaat
ttaaagcccattccatgagaagaaattcatacctagagactagataaaca
agagactatagacctagaggaccaaagaatagatagacaaacccgggtaa
aaccaaatattactgacctaaaataatgtaccaataaaatgacccctaat
gatatttctggacatttattgatgccttaccagtcagtggtcaagaggct
tcttctgtcgaagatgcaaagacgcagcgactccagcggacttaatgaca
agagagtcgatgcatgtctccatccaattcctccctaagctcagaatcta
tgaagagtagaccaccatcagg
gaattcccctgtactggagcatataaagtttgcaagaccactgggcttct
cttcccaatgatgggtgaataggccatcttctgctacatatgcagctaaa
gacatgagtactctagggggtactgattagttcatattgttgttccacct
atagggttgcaaaccccttcagctccttgggtactttctctagctcctcc
actggggaccctgtgttcatcctatagatgattgtgagcattcacttctg
aatttgccaggcactggcatagcctcacaagagacagctatatcagggtc
ctttcagcaaaatcttgctgtcatatgcaatagtgtctgtttggtggctg
attatgggatggatccctgagtggggcagtcagagatagtccattctttc
atcttagatccaaactttgtctctgtaactccttccatgggtattttgtt
ccctattttagggaggaatgaagtatccatgctttggtcttccttcttga
ttttcttgtgttttgcaaattgtatcttgggcattctaggtttcgggtat
ccacttatcagtgagtgcatatcaagtgacttcttttgtgattgggttac
ctcactcaggatgatgccctccagatcctccactatgttcattgcagcct
tatttataatagccagaagctggaaagaacccagatgtccctcaacagag
gaatgaatacagaaaatgtgatacatttacacaatggagaactactcagc
tattaaaaacaatgaatttatgaaattcttaggcaaatggatgtattttc
tttattgcttctatttccatttttagatcttgggccattttattcatttc
gttcacttgtttgactgtttatttctttaagtgatttatttgcttcccct
ttaagagcttctatttgtttgactgtcttcctgaatttctttaagaggat
aatattatcccattaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_22599519_22600708
seq2: B6Ng01-072O06.b_46_1217

seq1  GAATTCACATTTCCACCAGAATGTAAGGGCTCCCTTCTCTTCTCATCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTTCCACCAGAATGTAAGGGCTCCCTTCTCTTCTCATCCTC  50

seq1  ATCCTCATATAGTGTTTCCTAATAGATTGAAATTCTGTTAGAATGTTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCATATAGTGTTTCCTAATAGATTGAAATTCTGTTAGAATGTTGAG  100

seq1  GAAAAAACCTCAATGTCGTTTTAATTTATAATTCTTTAATGTATAGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAACCTCAATGTCGTTTTAATTTATAATTCTTTAATGTATAGAGAA  150

seq1  AAACCTGAATTTTCTTCATCCAATGGCGAGAAGTGGGCCTTTGCTCCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGAATTTTCTTCATCCAATGGCGAGAAGTGGGCCTTTGCTCCTAC  200

seq1  CTTCTTTTATACATATGAGATTTGTTTTGATTGGCTTGAGCTTGTGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTATACATATGAGATTTGTTTTGATTGGCTTGAGCTTGTGGAGG  250

seq1  TCTTGCAAATGTCATAGTAACTATAAGCTCATATGTGAAGTTAGGAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCAAATGTCATAGTAACTATAAGCTCATATGTGAAGTTAGGAAATC  300

seq1  GTTATTCCTTGAAGTTAACCAGCACCTCTAACTCTTAGAGGTTTTTGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCCTTGAAGTTAACCAGCACCTCTAACTCTTAGAGGTTTTTGTTC  350

seq1  TTGTTGTTGTTCACTCTTTCTTAGAATCCTCAACCTTCGTATCAGAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTCACTCTTTCTTAGAATCCTCAACCTTCGTATCAGAATTC  400

seq1  TCCTGTCCAATCACTTTAAGTATTAATACAACAAGGAGTCTGTGATTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCCAATCACTTTAAGTATTAATACAACAAGGAGTCTGTGATTGGA  450

seq1  TAGGGAAAAGGGAGGTGGAGCGAAGAGTTTCAGAGACAAAGACAGAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAAAGGGAGGTGGAGCGAAGAGTTTCAGAGACAAAGACAGAGGAG  500

seq1  AAAGGAGGAGAAGAAGGAAGGAAGATGGAGCAGGAAGAAGAAGAAGACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGGAGAAGAAGGAAGGAAGATGGAGCAGGAAGAAGAAGAAGACCC  550

seq1  AGATTCTGCGTGGCTTTAAAGAGCCACAGATAGATACATAATATAATAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTGCGTGGCTTTAAAGAGCCACAGATAGATACATAATATAATAAG  600

seq1  AGGACTGAATAATTGGGATAGCTTGTCTAATCTAGGCGGGCAGCTTGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGAATAATTGGGATAGCTTGTCTAATCTAGGCGGGCAGCTTGTAT  650

seq1  CATTACCACTTGGCTCTGAAATTATTGTGTGTGCAGATGCATAAATTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCACTTGGCTCTGAAATTATTGTGTGTGCAGATGCATAAATTGCT  700

seq1  AGATTTCCCCCCATAATGTAGTCTACCTCTTTGCTTAGATGATGTTCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCCCCCCATAATGTAGTCTACCTCTTTGCTTAGATGATGTTCTTC  750

seq1  TTGTGCAGAAGTTCATTGAGGTCCTATTCATTAATTGGTGTTAATGGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCAGAAGTTCATTGAGGTCCTATTCATTAATTGGTGTTAATGGTGC  800

seq1  TATCAAAATTTTATTCAGTTGTGAGAGTAGCCAACCATGTCTAATTTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAATTTTATTCAGTTGTGAGAGTAGCCAACCATGTCTAATTTAAT  850

seq1  TTAAAGCCCATTCCATGAGAAGAAATTCATACCTAGAGACTAGATAAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCCCATTCCATGAGAAGAAATTCATACCTAGAGACTAGATAAACA  900

seq1  AGAGACTATAGACCTAGAGGACCAAAGAATAGATAGACAAAACCGGGTAA  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGAGACTATAGACCTAGAGGACCAAAGAATAGATAGACAAACCCGGGTAA  950

seq1  AACCAAATATTACTGACCTAAAATAATGTACCAATAAAATGACCCCTAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAATATTACTGACCTAAAATAATGTACCAATAAAATGACCCCTAAT  1000

seq1  GATA-TTCTGGACATTTATTGATGCCTTAACCAGTCAGT-GTCATAGAGG  1048
      |||| ||||||||||||||||||||||| |||||||||| |||| |||||
seq2  GATATTTCTGGACATTTATTGATGCCTT-ACCAGTCAGTGGTCA-AGAGG  1048

seq1  CTTCCTCTGTCAGAAGATGCAAAAAGACGCAGCGACTCACAGCCAGACAT  1098
      |||| |||||| ||||||||  |||||||||||||||| ||| | ||| |
seq2  CTTCTTCTGTC-GAAGATGC--AAAGACGCAGCGACTC-CAG-CGGAC-T  1092

seq1  TACATGACAAGAGAGTCGAAATGCAGTGTCTCCATCCAATTCCTCCCCTT  1148
      || |||||||||||||||  ||||| |||||||||||||||||||||  |
seq2  TA-ATGACAAGAGAGTCG--ATGCA-TGTCTCCATCCAATTCCTCCC--T  1136

seq1  AGAGCTCAGAGAATCCTATGAAAGAGTAGACACACCATCAGG  1190
      | |||||  ||||| ||||| |||||||||| ||||||||||
seq2  A-AGCTC--AGAAT-CTATG-AAGAGTAGAC-CACCATCAGG  1172

seq1: chr5_18084617_18084826
seq2: B6Ng01-072O06.g_69_280 (reverse)

seq1  CACAGGGTCCCCAATGGGGGAGCTAGAGAAAGTACCCAAGAAGCTAAAGG  50
      ||||||||||||| ||| |||||||||||||||||||||| |||| ||||
seq2  CACAGGGTCCCCAGTGGAGGAGCTAGAGAAAGTACCCAAGGAGCTGAAGG  50

seq1  GGTCTGCAACCCTATAGGTGGAACAACAATATGAACTAACCAGTACCCCC  100
      ||| ||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGTTTGCAACCCTATAGGTGGAACAACAATATGAACTAATCAGTACCCCC  100

seq1  CAGAG--CTCATGTCTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCG  148
       ||||  ||||||||| |||||||||||||| || ||||||||||| || 
seq2  TAGAGTACTCATGTCTTTAGCTGCATATGTAGCAGAAGATGGCCTATTCA  150

seq1  GCCATCATTGGGAAGAGAGGCCCCTTGTTCTTGCAAACTTTATATGCCTC  198
       ||||||||||||||||| ||||  || |||||||||||||||||||  |
seq2  CCCATCATTGGGAAGAGAAGCCCAGTGGTCTTGCAAACTTTATATGCTCC  200

seq1  AGTACAGGGGAA  210
      ||||||||||||
seq2  AGTACAGGGGAA  212