BAC Information

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BAC

Clone NameB6Ng01-072P07
Chromosome5 (Build37)
Map Location 122,583,741 - 122,714,957
singlet/doubletdoublet
Overlap geneCcdc63, Ppp1cc, Hvcn1, Tect1
Upstream genePtpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2
Downstream genePptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072P07.bB6Ng01-072P07.g
ACCDH890226DH890227
length1,1041,029
definitionDH890226|Mus musculus domesticus DNA, BAC clone: B6Ng01-072P07, 5' end.DH890227|Mus musculus domesticus DNA, BAC clone: B6Ng01-072P07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,583,741 - 122,584,848)(122,713,917 - 122,714,957)
sequence
gaattctttaaactgagttcacaggcactggggtcaagccaaggggagct
cagccttggatcccagcactttaatgttcagcgagggaactgaggtacag
aggccatgtccacacagggccctctgcctgtcattctgtggcgtgcggtg
gtctccatctgctctcattctgactggacaggaaaagaaggcttggctca
gttttgtccaattagatcttcaagccagaaactttactctgggcatgaac
ccctcccaccgcaggacagctccggactgattgactagctgttactgagt
ctaagtgttgggtactggagctaactaaaagactgtgaagtcacctgctg
ctggtgtggccctttgtcactaacccacagtattgcgttgactgtttttg
ggttgtttttgttgttgttgttgttgtttgtttcttttcttttcttttct
tttcttttcttttcttttcttttcttttgagatggggtcttactatgtag
ccctggctgtccttgaacttgctatggaataccaggctagctttgaactc
acaagagatccacctgcctctgcctccagactgttgggcttaaaggcatg
cctcaccaggccagctaaaggaggggttttttaaaaaaatatttttaaag
attcatttatttattatatgtaagtacactgtagctgtcttcagacactc
cagaagagggagtcagatctcgttacagatgattgtgagccaccatgtgg
ttgctgggatttgaactctgaaccttcggaagagcagtcgggtgctctta
cccactgagccatctcaccagccctaaaggagggttttaagtgagctgca
ctatatctattaaaggaagcaggctagagtacatttacttgatccttttg
gtttgtgtgttttgaggcagggtcttactacataaaatctcactacagcc
tgggctgtcctcggagctccactatgtagacaaggctgacctcaaacgca
taaagatccatttggccctgaatgctccgactgacagtggacccccgtgc
tgtgcctcagtctcacggtattgtccctccctgaggtcaatcctgcctgt
ctca
gaattcttttgtttctcttatcataaataaatccgtggacagaagtgctc
tggcgacctcctgcgatgtatccaaaggcaaagaaagtaaagaaagtgtt
acatggggtaagaaattcaatgtaacttaaaggaaccaagtcacttctaa
acatgcgctgcgggtcttttattagaaatactctcttctaggctctgccc
tagtcttgactgactccgaattctgtgaggctatagctgggaatctacat
ttttaaaaaaaaaaaaaaaaacaaccacgcagcacccaaagtgtcacaac
agaagtttacatcttccgattttctgagggctccttagaaagagctgtct
cataccccgcccccaccggccccgcccctcctctccgattccgcccaggc
cccgcctatagcctcgcccagctcccgccccattcgcgggtctgacttca
ggccccaccttcttccgcagaccagtttggcctcgcgagccctttcccgt
gatacctagcgctaggctgtgactgttgcccgggcaacagacgggcctag
ctccccggcgcgggctactctgctaggccatggggtcgcggggtctcccg
ccgctcctgctggtgctcctaaactgctacacctcttcgagcacccaggt
cattgccatcccggctgcggccaccccagcagtgacgaaggaggatctca
attccaccaaggccacccccaccactctgcagccctccctgtcgcctagg
accccgggaactcccagggcaccggagcgctctggccccaggcctacccc
ggtcacggacggtgggtacaaaggggtgacccccctggagcgggtacacc
agctcaaagttacccccttctcagcctccctgtcgtaccctcaggggaga
tcggatctctggcacacaaatgcggaggcggggctcagttactccctttt
cgcatcattgcagacgctgcagtggggtactagatagaactacagatgag
tgagcagtactggtagaagaagagtgcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_122583741_122584848
seq2: B6Ng01-072P07.b_47_1150

seq1  GAATTCTTTAAACTGAGTTCACAGGCACTGGGGTCAAGCCAAGGGGAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAACTGAGTTCACAGGCACTGGGGTCAAGCCAAGGGGAGCT  50

seq1  CAGCCTTGGATCCCAGCACTTTAATGTTCAGCGAGGGAACTGAGGTACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTGGATCCCAGCACTTTAATGTTCAGCGAGGGAACTGAGGTACAG  100

seq1  AGGCCATGTCCACACAGGGCCCTCTGCCTGTCATTCTGTGGCGTGCGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATGTCCACACAGGGCCCTCTGCCTGTCATTCTGTGGCGTGCGGTG  150

seq1  GTCTCCATCTGCTCTCATTCTGACTGGACAGGAAAAGAAGGCTTGGCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCATCTGCTCTCATTCTGACTGGACAGGAAAAGAAGGCTTGGCTCA  200

seq1  GTTTTGTCCAATTAGATCTTCAAGCCAGAAACTTTACTCTGGGCATGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTCCAATTAGATCTTCAAGCCAGAAACTTTACTCTGGGCATGAAC  250

seq1  CCCTCCCACCGCAGGACAGCTCCGGACTGATTGACTAGCTGTTACTGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCACCGCAGGACAGCTCCGGACTGATTGACTAGCTGTTACTGAGT  300

seq1  CTAAGTGTTGGGTACTGGAGCTAACTAAAAGACTGTGAAGTCACCTGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGTTGGGTACTGGAGCTAACTAAAAGACTGTGAAGTCACCTGCTG  350

seq1  CTGGTGTGGCCCTTTGTCACTAACCCACAGTATTGCGTTGACTGTTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTGGCCCTTTGTCACTAACCCACAGTATTGCGTTGACTGTTTTTG  400

seq1  GGTTGTTTTTGTTGTTGTTGTTGTTGTTTGTTTCTTTTCTTTTCTTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTTTTGTTGTTGTTGTTGTTGTTTGTTTCTTTTCTTTTCTTTTCT  450

seq1  TTTCTTTTCTTTTCTTTTCTTTTCTTTTGAGATGGGGTCTTACTATGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTCTTTTCTTTTCTTTTCTTTTGAGATGGGGTCTTACTATGTAG  500

seq1  CCCTGGCTGTCCTTGAACTTGCTATGGAATACCAGGCTAGCTTTGAACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTGTCCTTGAACTTGCTATGGAATACCAGGCTAGCTTTGAACTC  550

seq1  ACAAGAGATCCACCTGCCTCTGCCTCCAGACTGTTGGGCTTAAAGGCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGATCCACCTGCCTCTGCCTCCAGACTGTTGGGCTTAAAGGCATG  600

seq1  CCTCACCAGGCCAGCTAAAGGAGGGGTTTTTTAAAAAAATATTTTTAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCAGGCCAGCTAAAGGAGGGGTTTTTTAAAAAAATATTTTTAAAG  650

seq1  ATTCATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTC  700

seq1  CAGAAGAGGGAGTCAGATCTCGTTACAGATGATTGTGAGCCACCATGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGGGAGTCAGATCTCGTTACAGATGATTGTGAGCCACCATGTGG  750

seq1  TTGCTGGGATTTGAACTCTGAACCTTCGGAAGAGCAGTCGGGTGCTCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGGATTTGAACTCTGAACCTTCGGAAGAGCAGTCGGGTGCTCTTA  800

seq1  CCCACTGAGCCATCTCACCAGCCCTAAAGGAGGGTTTTAAGTGAGCTGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGAGCCATCTCACCAGCCCTAAAGGAGGGTTTTAAGTGAGCTGCA  850

seq1  CTATATCTATTAAAGGAAGCAGGCTAGAGTACATTTACTTGATCCTTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCTATTAAAGGAAGCAGGCTAGAGTACATTTACTTGATCCTTTTG  900

seq1  GTTTGTGTGTTTTGAGGCAGGGTCTTACTACAT-ACATCTCACTACAGCC  949
      ||||||||||||||||||||||||||||||||| | ||||||||||||||
seq2  GTTTGTGTGTTTTGAGGCAGGGTCTTACTACATAAAATCTCACTACAGCC  950

seq1  TGGGCTGT-CTCGGAGCT-CACTATGTAGACCAGGCTGACCTCAAACGCA  997
      |||||||| ||||||||| |||||||||||| ||||||||||||||||||
seq2  TGGGCTGTCCTCGGAGCTCCACTATGTAGACAAGGCTGACCTCAAACGCA  1000

seq1  TAGAGATCCATTTGGCCCTGAGTGCTCAGACTGAACAGGTGCACCCGCGT  1047
      || |||||||||||||||||| ||||| ||||| ||| ||| |||| |||
seq2  TAAAGATCCATTTGGCCCTGAATGCTCCGACTG-ACA-GTGGACCCCCGT  1048

seq1  GCTGTGCTCAAGTCTTCACGGTATTGTCCCCTCGCCTGAGGTCAGACTCC  1097
      |||||||   |||| |||||||||||| ||||| |||||||||  | |||
seq2  GCTGTGCCTCAGTC-TCACGGTATTGT-CCCTC-CCTGAGGTC--AATCC  1093

seq1  TGCTTGTCTCA  1108
      ||| |||||||
seq2  TGCCTGTCTCA  1104

seq1: chr5_122713917_122714957
seq2: B6Ng01-072P07.g_70_1098 (reverse)

seq1  TAGCACTCTTTCTTCTACCAGTACTGCCTTCAACTCATTCTGTAGGTTTC  50
      |||||||| ||||||||||||||||||  || ||||| |||||||  |||
seq2  TAGCACTC-TTCTTCTACCAGTACTGC--TC-ACTCA-TCTGTAG--TTC  43

seq1  TATCTAGTACCCCACTGCAGCCGTCTGCAATGATGCGGAAAAGGGAGTAA  100
      |||||||||||||||||||| ||||||||||||||| |||||||||||||
seq2  TATCTAGTACCCCACTGCAG-CGTCTGCAATGATGC-GAAAAGGGAGTAA  91

seq1  CTGAGCCCCGCCCTCCGCATTTGTGTGCCAGAGATCCGATCTCCCCCTGA  150
      |||||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  CTGAGCCCCG-CCTCCGCATTTGTGTGCCAGAGATCCGATCT-CCCCTGA  139

seq1  GGGTAACGACAGGGAGGCTGAGAAGGGGGTAACTTTGAGCTGGTGTACCC  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGT-ACGACAGGGAGGCTGAGAAGGGGGTAACTTTGAGCTGGTGTACCC  188

seq1  GCTCCAGGGGGGTCACCCCTTTGTACCCACCGTCCGTGACCGGGGTAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGGGGGGTCACCCCTTTGTACCCACCGTCCGTGACCGGGGTAGGC  238

seq1  CTGGGGCCAGAGCGCTCCGGTGCCCTGGGAGTTCCCGGGGTCCTAGGCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCCAGAGCGCTCCGGTGCCCTGGGAGTTCCCGGGGTCCTAGGCGA  288

seq1  CAGGGAGGGCTGCAGAGTGGTGGGGGTGGCCTTGGTGGAATTGAGATCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGGGCTGCAGAGTGGTGGGGGTGGCCTTGGTGGAATTGAGATCCT  338

seq1  CCTTCGTCACTGCTGGGGTGGCCGCAGCCGGGATGGCAATGACCTGGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCGTCACTGCTGGGGTGGCCGCAGCCGGGATGGCAATGACCTGGGTG  388

seq1  CTCGAAGAGGTGTAGCAGTTTAGGAGCACCAGCAGGAGCGGCGGGAGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAAGAGGTGTAGCAGTTTAGGAGCACCAGCAGGAGCGGCGGGAGACC  438

seq1  CCGCGACCCCATGGCCTAGCAGAGTAGCCCGCGCCGGGGAGCTAGGCCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGACCCCATGGCCTAGCAGAGTAGCCCGCGCCGGGGAGCTAGGCCCG  488

seq1  TCTGTTGCCCGGGCAACAGTCACAGCCTAGCGCTAGGTATCACGGGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGCCCGGGCAACAGTCACAGCCTAGCGCTAGGTATCACGGGAAAG  538

seq1  GGCTCGCGAGGCCAAACTGGTCTGCGGAAGAAGGTGGGGCCTGAAGTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCGCGAGGCCAAACTGGTCTGCGGAAGAAGGTGGGGCCTGAAGTCAG  588

seq1  ACCCGCGAATGGGGCGGGAGCTGGGCGAGGCTATAGGCGGGGCCTGGGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGCGAATGGGGCGGGAGCTGGGCGAGGCTATAGGCGGGGCCTGGGCG  638

seq1  GAATCGGAGAGGAGGGGCGGGGCCGGTGGGGGCGGGGTATGAGACAGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCGGAGAGGAGGGGCGGGGCCGGTGGGGGCGGGGTATGAGACAGCTC  688

seq1  TTTCTAAGGAGCCCTCAGAAAATCGGAAGATGTAAACTTCTGTTGTGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAGGAGCCCTCAGAAAATCGGAAGATGTAAACTTCTGTTGTGACA  738

seq1  CTTTGGGTGCTGCGTGGTTGTTTTTTTTTTTTTTTTTAAAAATGTAGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGTGCTGCGTGGTTGTTTTTTTTTTTTTTTTTAAAAATGTAGATT  788

seq1  CCCAGCTATAGCCTCACAGAATTCGGAGTCAGTCAAGACTAGGGCAGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTATAGCCTCACAGAATTCGGAGTCAGTCAAGACTAGGGCAGAGC  838

seq1  CTAGAAGAGAGTATTTCTAATAAAAGACCCGCAGCGCATGTTTAGAAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGAGAGTATTTCTAATAAAAGACCCGCAGCGCATGTTTAGAAGTG  888

seq1  ACTTGGTTCCTTTAAGTTACATTGAATTTCTTACCCCATGTAACACTTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTTCCTTTAAGTTACATTGAATTTCTTACCCCATGTAACACTTTC  938

seq1  TTTACTTTCTTTGCCTTTGGATACATCGCAGGAGGTCGCCAGAGCACTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTCTTTGCCTTTGGATACATCGCAGGAGGTCGCCAGAGCACTTC  988

seq1  TGTCCACGGATTTATTTATGATAAGAGAAACAAAAGAATTC  1041
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACGGATTTATTTATGATAAGAGAAACAAAAGAATTC  1029