BAC Information

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BAC

Clone NameB6Ng01-073E21
Chromosome5 (Build37)13 (Build37)
Map Location 109,847,935 - 109,848,97329,328,971 - 29,329,539
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589, EG231591, LOC667128, EG211223, EG384220, EG636052
Downstream geneEG384221, LOC667159, LOC667171, Tpte2, EG667185, LOC671695, LOC636173, LOC624831, LOC100041734, LOC100042749, LOC667198, 4930522L14Rik, LOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073E21.bB6Ng01-073E21.g
ACCDH890476DH890477
length1,036899
definitionDH890476|Mus musculus domesticus DNA, BAC clone: B6Ng01-073E21, 5' end.DH890477|Mus musculus domesticus DNA, BAC clone: B6Ng01-073E21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(109,847,935 - 109,848,973)(29,328,971 - 29,329,539)
sequence
gaattcagtgtggccatcatgggcataagtataaggtagctcaaaaaatg
tgtcactcattgtaacttacccaagttacataaattagcataccagacat
acatatgtgttgttgcaatataatccaagcaaataccaacaagaggtgaa
tgaaaaatataaggtgtatactaacattaggagtaaaattctcttataaa
tgacaacgaaattctctcattcctttgagtaaaaactatgaaattgttct
cagtcatctaataaggtatgaacaaacatcaaccaaagacatgttttatc
agaagggactgattgccatggactgaagatcaggcaaaaaaagttagcat
tgtaacacggtgattgtctgcataggtactgatattggacagaattggtg
ttgaatatctgtaattccaggcattactggatgtaacatgaacaaaggtt
ctccagatgacctgaatcataggacgtttgaagagattttccaaagatga
ctaacatagattagtatatatacaacagagggaatgctcaattcctggct
caattttgcatgtaagactccccttccctacactagataatggaaaacat
aatgttccatgaatcaactcaaagtctgaatgacaagggacatttatgaa
cttctcaacttttgtcttactatggaagttctgatgaaatccattatcat
gattgccaattgtgttcttagatacagctgttgatatgtggtctggccca
agctgttcaggataagattgtccctggagtgtatgccatggatataaatg
aaatcatggcacctgaggatggtgaacatgacctttacaacatgttttca
cgaatgtttgaataaagtttcagacctcagatgcagagctcgaggccaca
attttccagatgtattcagggactatgacacagatgagtgggaaggaaat
gtagaaataattgagtggatcctccagacaataatagccttgcatggaca
taataggtgtacgtgtgtgtgtttgtgtggtgtgtg
gaattcttttctagggtttctatctccagcgttgcctcactttgggtttt
ctttattgtgtctacttccctttttaggtctagtatggttttgttcattt
ccattacctgtttggatgtgttttcctgtttttctataaggacttctacc
tgtttggttgtgttttcctgttttttttttaaggacttgtaactctttag
cagtgttctcctgtattttttaagtgagttattaaattccttctttatgt
cctctaccatcatcatgagaaatgcttttaaatccaggtctaccttttca
ggtgtgttaggatgccctggactgggcgaagtgggagtgctgggttctga
tgatggtgagtggtcttggttcctgttagtaggattcttacgtttacctt
ttgccatctggcaatctctggagttagttgttatagttgtctttgtttag
agattgttcctctgttgattttgttaccctttatcagcagacgtgggaga
ctagctctctcctctgagtttcagtggtcagagcagtctctgcaggcaag
ctctcttctttcagggaaggtgcacagttatctggtgtttggacctcctc
ctggctgaagatgaaggcccaaaacaggatctttcccagaagctgtgttg
ctttggccaggaaggtggccggttgtctggagccgaagatggcaccgcct
cagaagctctgtggctctcgcctgttccagaaacggctggcctctgtatt
ccacaccgtcacccgtgcagcctgccctccgcggagtcctggagccaagg
aggctcccgccgccggggcctgaggcacaaacctctcagctggcggatcc
ctgtgcactcccattgttactttttagagacgttatttctactgttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_109847935_109848973
seq2: B6Ng01-073E21.b_50_1085

seq1  GAATTCAGTGTGGCCATCATGGGCATAAGTATAAGGTAGCTCAAAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTGGCCATCATGGGCATAAGTATAAGGTAGCTCAAAAAATG  50

seq1  TGTCACTCATTGTAACTTACCCAAGTTACATAAATTAGCATACCAGACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTCATTGTAACTTACCCAAGTTACATAAATTAGCATACCAGACAT  100

seq1  ACATATGTGTTGTTGCAATATAATCCAAGCAAATACCAACAAGAGGTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGTGTTGTTGCAATATAATCCAAGCAAATACCAACAAGAGGTGAA  150

seq1  TGAAAAATATAAGGTGTATACTAACATTAGGAGTAAAATTCTCTTATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATATAAGGTGTATACTAACATTAGGAGTAAAATTCTCTTATAAA  200

seq1  TGACAACGAAATTCTCTCATTCCTTTGAGTAAAAACTATGAAATTGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACGAAATTCTCTCATTCCTTTGAGTAAAAACTATGAAATTGTTCT  250

seq1  CAGTCATCTAATAAGGTATGAACAAACATCAACCAAAGACATGTTTTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATCTAATAAGGTATGAACAAACATCAACCAAAGACATGTTTTATC  300

seq1  AGAAGGGACTGATTGCCATGGACTGAAGATCAGGCAAAAAAAGTTAGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGACTGATTGCCATGGACTGAAGATCAGGCAAAAAAAGTTAGCAT  350

seq1  TGTAACACGGTGATTGTCTGCATAGGTACTGATATTGGACAGAATTGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACACGGTGATTGTCTGCATAGGTACTGATATTGGACAGAATTGGTG  400

seq1  TTGAATATCTGTAATTCCAGGCATTACTGGATGTAACATGAACAAAGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATATCTGTAATTCCAGGCATTACTGGATGTAACATGAACAAAGGTT  450

seq1  CTCCAGATGACCTGAATCATAGGACGTTTGAAGAGATTTTCCAAAGATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGATGACCTGAATCATAGGACGTTTGAAGAGATTTTCCAAAGATGA  500

seq1  CTAACATAGATTAGTATATATACAACAGAGGGAATGCTCAATTCCTGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATAGATTAGTATATATACAACAGAGGGAATGCTCAATTCCTGGCT  550

seq1  CAATTTTGCATGTAAGACTCCCCTTCCCTACACTAGATAATGGAAAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTGCATGTAAGACTCCCCTTCCCTACACTAGATAATGGAAAACAT  600

seq1  AATGTTCCATGAATCAACTCAAAGTCTGAATGACAAGGGACATTTATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCCATGAATCAACTCAAAGTCTGAATGACAAGGGACATTTATGAA  650

seq1  CTTCTCAACTTTTGTCTTACTATGGAAGTTCTGATGAAATCCATTATCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAACTTTTGTCTTACTATGGAAGTTCTGATGAAATCCATTATCAT  700

seq1  GATTGCCAATTGTGTTCTTAGATACAGCTGTTGATATGTGGTCTGGCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCAATTGTGTTCTTAGATACAGCTGTTGATATGTGGTCTGGCCCA  750

seq1  AGCTGTTCAGGATAAGATTGTCCCTGGAGTGTATGCCATGGATATAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTCAGGATAAGATTGTCCCTGGAGTGTATGCCATGGATATAAATG  800

seq1  AAATCATGGCACCTGAGGATGGTGAACATGACCTTTACAACATGTTTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATGGCACCTGAGGATGGTGAACATGACCTTTACAACATGTTTTCA  850

seq1  CGAATGTTTGAATAAAGTTTTCAGACCTCAGATGCAGAGCTCGAGGCCAC  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CGAATGTTTGAATAAAG-TTTCAGACCTCAGATGCAGAGCTCGAGGCCAC  899

seq1  AATTTTCCAGATGTATTCAGGGACTATGACACAGGATGAGTGGGAAGGAA  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AATTTTCCAGATGTATTCAGGGACTATGACACA-GATGAGTGGGAAGGAA  948

seq1  ATGTAGAAAATAATTGAGTGGAT-CTCCAGACAATAATAGCCTTGCAATG  999
      |||||| |||||||||||||||| |||||||||||||||||||||| |||
seq2  ATGTAG-AAATAATTGAGTGGATCCTCCAGACAATAATAGCCTTGC-ATG  996

seq1  GACAT-ATAGGTGTACGTGTGTGTGTGTGTGTGTGTGTGTG  1039
      ||||| |||||||||||||||||||| |||||| |||||||
seq2  GACATAATAGGTGTACGTGTGTGTGTTTGTGTG-GTGTGTG  1036

seq1: chr13_29328971_29329539
seq2: B6Ng01-073E21.g_70_638 (reverse)

seq1  CACCTTCCCTGAAATAGGAGAGCTTGCCTGCAGAGACTGCTCTGACCACT  50
      |||||||||||||| | |||||||||||||||||||||||||||||||||
seq2  CACCTTCCCTGAAAGAAGAGAGCTTGCCTGCAGAGACTGCTCTGACCACT  50

seq1  GAAACTCAGAGGAGAGAGCTAGCCTCCCACGTCTGCTGATAGAGGGTAAC  100
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  GAAACTCAGAGGAGAGAGCTAGTCTCCCACGTCTGCTGATAAAGGGTAAC  100

seq1  AAAAGCAACAGAGGAACAATCTCTAAACAAAGACAACTATAACAACTAAC  150
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAACAGAGGAACAATCTCTAAACAAAGACAACTATAACAACTAAC  150

seq1  TCCAGAGATTGCCAGATGGCGAAAGGTAAACGTAAGAATCCTACTAACAG  200
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCCAGAGATTGCCAGATGGCAAAAGGTAAACGTAAGAATCCTACTAACAG  200

seq1  GAACCAAGACCACTCACCATCATCAGAACCCAGCACTCCCACTTCGCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAAGACCACTCACCATCATCAGAACCCAGCACTCCCACTTCGCCCA  250

seq1  GTCCAGGACATCCTAACACACCTGAAAAGGTAGACCTGGATTTAAAAGCA  300
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGGCATCCTAACACACCTGAAAAGGTAGACCTGGATTTAAAAGCA  300

seq1  TTTCTCATGATGATGGTAGAGGACATAAAGAAGGAATTTAATAACTCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATGATGATGGTAGAGGACATAAAGAAGGAATTTAATAACTCACT  350

seq1  TAAGGAAATACAGGAGAACACTGCTAAAGAGTTACAAGTCCTT-AAAGAA  399
      |||  |||||||||||||||||||||||||||||||||||||| ||| ||
seq2  TAA-AAAATACAGGAGAACACTGCTAAAGAGTTACAAGTCCTTAAAAAAA  399

seq1  AAACAGGAAAACACAACCAAACAGGTAGAAGTCCTTATAGAAAAACAGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGAAAACACAACCAAACAGGTAGAAGTCCTTATAGAAAAACAGGA  449

seq1  AAACACATCGAAACAGGTGATAGAAATGAACAAAACCATACTAGACCTAA  499
      ||||||||| |||||||| || ||||||||||||||||||||||||||||
seq2  AAACACATCCAAACAGGTAATGGAAATGAACAAAACCATACTAGACCTAA  499

seq1  AAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCAACGCTGGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCAACGCTGGAG  549

seq1  ATAGAAACCCTAGGAAAGAA  569
      ||||||||||||| ||||||
seq2  ATAGAAACCCTAGAAAAGAA  569