BAC Information

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BAC

Clone NameB6Ng01-073F09
Chromosome5 (Build37)
Map Location 51,589,261 - 51,716,767
singlet/doubletdoublet
Overlap genenone
Upstream geneEG637307, LOC100041015, LOC242987, EG624734, LOC666265, LOC100041059
Downstream genePpargc1a, Dhx15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073F09.bB6Ng01-073F09.g
ACCDH890498DH890499
length1,127935
definitionDH890498|Mus musculus domesticus DNA, BAC clone: B6Ng01-073F09, 5' end.DH890499|Mus musculus domesticus DNA, BAC clone: B6Ng01-073F09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,715,616 - 51,716,767)(51,589,261 - 51,590,205)
sequence
aggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaa
aaactattctcaaggataaaagaacctctggtggaatcaccatgcctgac
ctaaagctttactacagagcaaaatcagtcttttaaaactgggaaatctc
agcatctgtggaagtctgaattaactccaagttctctttatatgtttatg
tgaggactaataactactagacaacaaaggagtggagtattttatgtccc
aattgcacagaaagctttacagttagcaacaaaacagatttgattctatg
ctctctgatctgtattgctaacatagaatgctggtatttgttttatgtag
gaaagagccaaagaaatttgtatcttattccgttttttgacatcaatggt
catgaacagcataagccccgccatttaaccttctgtgatcaagtgtcctc
atggtgaagacccatcaatattcacagttctcaggctcatttgatgactg
attgggagcaaagtttgcaaatcgcttagcatgattcccaatgtcttatg
acaaagaagcaaacaagcacaccactaataagaaaggacaaggatttcta
atgttctaggaatgaatggtcctcctgcaccagaccactacagagatatc
tgcattcttagaggccatagaagtctattgaggtgtttgttttcagaagc
cttttaaacatctctgctgtgtttgttgtagtgtaccagcatagagaagg
attccattccctgctgttatactcctaagtatttttctatagtggctcat
aattctgtaacaaattagtacatcaaatttccacatttttcatttatata
tttcttctgatatcaacacaattttctctttgaaaagcaccaatctacac
cttttttttttccatttttattaggtatttaactcatttacatttccaat
gctataccaaaagtccccatatcacccacccccactcccctgctcaccac
tcccctttttggcctggtatttcctgtactggggcatataaagttgcagt
ccatggcctcctctttccagtgatgcctttgacatataatgttagtgtgc
tacagcctctcctttagccaaatgatg
gaattccagatgaagttcttatctgttctaaccaagaaagtctttcttta
caccttactttgccttactcgaaccatatttgtttttcaaagtaaacact
gctccaatttctcttttactcatatcactcttctcaataaaccaagcccc
tctggtcaaaggaacattcttcattcttagaacaaaagaaagaaatatag
agacatttttggcaaaacagatatagagcatgtaccaaaaatctgccatt
taatgaggttttccacaaaacttataaattctgttcttttattttataca
atacaacacagactttaatagacattaagtagtccttatttctttcagat
gtatacttgaagataatctgcttgcttttcaaactccttcgtatcagact
attgtgatcacagcattttgcctcacaagactgaagacctgagttcaatc
tctgaattgcatagtaaaaagaggactcccttttgaaatcttccatctga
cctccacaaatatcctgtggtatatgtgttccctaataaataaatgaaat
aaataaataacaaattgtaaatagtctgtgctaaaaaaatgtaagaaaat
aaaaataccatacaggaaatagtgtgaaaaatagaacctttaagttggtt
tttccccaagatgcaatctatttcataaattagtatatattagaaactca
tgcagataggtaataagaggaatatatgacaaaaatatcaatggagttct
ctttgctttgtgaaattagatactttatagaaagtatatttcatccaaaa
gtgtctacttgatacactagaaatgcatgaatacttctaccccagtgtac
gttcttagctgttaggtgaacatattctaaagggatgagtcctagatatg
aggccactgtgtgacactcatacttgtgccaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_51715616_51716767
seq2: B6Ng01-073F09.b_56_1182 (reverse)

seq1  CATCATTCCTTTTTGGGCTAAAAGTGAGAGGGCCGTAGCACACTAACAAT  50
      |||||       || ||||||| | ||   ||| ||||||||||||| ||
seq2  CATCA-------TTTGGCTAAAGGAGA---GGCTGTAGCACACTAAC-AT  39

seq1  TATATGTCATAAAAGGCCATCACTGGAAAGAGAGGCCCATTGGACTTGCA  100
      ||||||||   ||||| |||||||||||||||  | ||| ||||| ||| 
seq2  TATATGTC---AAAGG-CATCACTGGAAAGAGGAGGCCA-TGGAC-TGC-  82

seq1  AACTTTATATGCCCCAGTACAGGGGAATACCAGGGCCAAAAAGGGGGAGT  150
      ||||||||||||||||||||| || ||||||| ||||||||| |||||||
seq2  AACTTTATATGCCCCAGTACA-GGAAATACCA-GGCCAAAAA-GGGGAGT  129

seq1  GGGTGGGCAGGGGAGTGGGGGTGGGTGGATATGGGGGACTTTTGGTATAG  200
       |||| |||||||||||||||||||| ||||| |||||||||||||||||
seq2  -GGTGAGCAGGGGAGTGGGGGTGGGT-GATAT-GGGGACTTTTGGTATAG  176

seq1  CATTGGAAATGTAAATGAGTTAAATACCTAATAAAAAATGGAAAAAAAAA  250
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CATTGGAAATGTAAATGAGTTAAATACCTAAT-AAAAATGGAAAAAAAAA  225

seq1  AGGTGTAGATTGGTGCTTTTCAAAGAGAAAATTGTGTTGATATCAGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTAGATTGGTGCTTTTCAAAGAGAAAATTGTGTTGATATCAGAAGA  275

seq1  AATATATAAATGAAAAATGTGGAAATTTGATGTACTAATTTGTTACAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATAAATGAAAAATGTGGAAATTTGATGTACTAATTTGTTACAGAA  325

seq1  TTATGAGCCACTATAGAAAAATACTTAGGAGTATAACAGCAGGGAATGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGCCACTATAGAAAAATACTTAGGAGTATAACAGCAGGGAATGGA  375

seq1  ATCCTTCTCTATGCTGGTACACTACAACAAACACAGCAGAGATGTTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCTCTATGCTGGTACACTACAACAAACACAGCAGAGATGTTTAAA  425

seq1  AGGCTTCTGAAAACAAACACCTCAATAGACTTCTATGGCCTCTAAGAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCTGAAAACAAACACCTCAATAGACTTCTATGGCCTCTAAGAATG  475

seq1  CAGATATCTCTGTAGTGGTCTGGTGCAGGAGGACCATTCATTCCTAGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATCTCTGTAGTGGTCTGGTGCAGGAGGACCATTCATTCCTAGAAC  525

seq1  ATTAGAAATCCTTGTCCTTTCTTATTAGTGGTGTGCTTGTTTGCTTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAATCCTTGTCCTTTCTTATTAGTGGTGTGCTTGTTTGCTTCTTT  575

seq1  GTCATAAGACATTGGGAATCATGCTAAGCGATTTGCAAACTTTGCTCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAAGACATTGGGAATCATGCTAAGCGATTTGCAAACTTTGCTCCCA  625

seq1  ATCAGTCATCAAATGAGCCTGAGAACTGTGAATATTGATGGGTCTTCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCATCAAATGAGCCTGAGAACTGTGAATATTGATGGGTCTTCACC  675

seq1  ATGAGGACACTTGATCACAGAAGGTTAAATGGCGGGGCTTATGCTGTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGACACTTGATCACAGAAGGTTAAATGGCGGGGCTTATGCTGTTCA  725

seq1  TGACCATTGATGTCAAAAAACGGAATAAGATACAAATTTCTTTGGCTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATTGATGTCAAAAAACGGAATAAGATACAAATTTCTTTGGCTCTT  775

seq1  TCCTACATAAAACAAATACCAGCATTCTATGTTAGCAATACAGATCAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACATAAAACAAATACCAGCATTCTATGTTAGCAATACAGATCAGAG  825

seq1  AGCATAGAATCAAATCTGTTTTGTTGCTAACTGTAAAGCTTTCTGTGCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGAATCAAATCTGTTTTGTTGCTAACTGTAAAGCTTTCTGTGCAA  875

seq1  TTGGGACATAAAATACTCCACTCCTTTGTTGTCTAGTAGTTATTAGTCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACATAAAATACTCCACTCCTTTGTTGTCTAGTAGTTATTAGTCCT  925

seq1  CACATAAACATATAAAGAGAACTTGGAGTTAATTCAGACTTCCACAGATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAACATATAAAGAGAACTTGGAGTTAATTCAGACTTCCACAGATG  975

seq1  CTGAGATTTCCCAGTTTTAAAAGACTGATTTTGCTCTGTAGTAAAGCTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATTTCCCAGTTTTAAAAGACTGATTTTGCTCTGTAGTAAAGCTTT  1025

seq1  AGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTTGAGAATAGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTTGAGAATAGT  1075

seq1  TTTTGCTATCCTAGGTTTTTTGTTATTCCAGATGAATTTGCAAATTGCTC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTATCCTAGGTTTTTTGTTATTCCAGATGAATTTGCAAATTGCTC  1125

seq1  CT  1152
      ||
seq2  CT  1127

seq1: chr5_51589261_51590205
seq2: B6Ng01-073F09.g_67_1001

seq1  GAATTCCAGATGAAGTTCTTATCTGTTCTAACCAAGAAAGTCTTTCTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATGAAGTTCTTATCTGTTCTAACCAAGAAAGTCTTTCTTTA  50

seq1  CACCTTTCTTTGCCTTACTCGAACCATATTTGTTTTTCAAAGTAAACACT  100
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTACTTTGCCTTACTCGAACCATATTTGTTTTTCAAAGTAAACACT  100

seq1  GCTCCAATTTCTCTTTTACTCATATCACTCTTCTCAATAAACCAAGCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAATTTCTCTTTTACTCATATCACTCTTCTCAATAAACCAAGCCCC  150

seq1  TCTGGTCAAAGGAACATTCTTCATTCTTAGAACAAAAGAAAGAAATATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTCAAAGGAACATTCTTCATTCTTAGAACAAAAGAAAGAAATATAG  200

seq1  AGACATTTTTGGCAAAACAGATATAGAGCATGTACCAAAAATCTGCCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTTTGGCAAAACAGATATAGAGCATGTACCAAAAATCTGCCATT  250

seq1  TAATGAGGTTTTCCACAAAACTTATAAATTCTGTTCTTTTATTTTATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGGTTTTCCACAAAACTTATAAATTCTGTTCTTTTATTTTATACA  300

seq1  ATACAACACAGACTTTAATAGACATTAAGTAGTCCTTATTTCTTTCAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAACACAGACTTTAATAGACATTAAGTAGTCCTTATTTCTTTCAGAT  350

seq1  GTATACTTGAAGATAATCTGCTTGCTTTTCAAACTCCTTCGTATCAGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACTTGAAGATAATCTGCTTGCTTTTCAAACTCCTTCGTATCAGACT  400

seq1  ATTGTGATCACAGCATTTTGCCTCACAAGACTGAAGACCTGAGTTCAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGATCACAGCATTTTGCCTCACAAGACTGAAGACCTGAGTTCAATC  450

seq1  TCTGAATTGCATAGTAAAAAGAGGACTCCCTTTTGAAATCTTCCATCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATTGCATAGTAAAAAGAGGACTCCCTTTTGAAATCTTCCATCTGA  500

seq1  CCTCCACAAATATCCTGTGGTATATGTGTTCCCTAATAAATAAATGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACAAATATCCTGTGGTATATGTGTTCCCTAATAAATAAATGAAAT  550

seq1  AAATAAATAACAAATTGTAAATAGTCTGTGCTAAAAAAATGTAAGAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAACAAATTGTAAATAGTCTGTGCTAAAAAAATGTAAGAAAAT  600

seq1  AAAAATACCATACAGGAAATAGTGTGAAAAATAGAACCTTTAAGTTGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATACCATACAGGAAATAGTGTGAAAAATAGAACCTTTAAGTTGGTT  650

seq1  TTTCCCCAAGATGCAATCTATTTCATAAATTAGTATATATTAGAAACTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCAAGATGCAATCTATTTCATAAATTAGTATATATTAGAAACTCA  700

seq1  TGCAGATAGGTAAATAAGAGGAATATATGACAAAAATATCAATGGAGTTC  750
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATAGGT-AATAAGAGGAATATATGACAAAAATATCAATGGAGTTC  749

seq1  TCTTTGCTTTGTGAAATTAGATACTTTATAGAAAGTATATTTTCATCCAA  800
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCTTTGCTTTGTGAAATTAGATACTTTATAGAAAGTATA-TTTCATCCAA  798

seq1  AAGTGTCTACTTGATTACACTAG-AATGCATTGAATACTTCTACCCCAGT  849
      |||||||||||||| |||||||| |||||| |||||||||||||||||||
seq2  AAGTGTCTACTTGA-TACACTAGAAATGCA-TGAATACTTCTACCCCAGT  846

seq1  GTACGTTTCTTAGCTGTTTAGGGGAACATATTCTAGAGGGATGAGTTCGT  899
      ||||| |||||||||| ||||| |||||||||||| ||||||||| || |
seq2  GTACG-TTCTTAGCTG-TTAGGTGAACATATTCTAAAGGGATGAG-TCCT  893

seq1  AGATAATGAGGCCAACTGTTGAGACACTCAGACTTGTGCCTAATAA  945
      |||| |||||||| |||| || |||||||| ||||||||| |||||
seq2  AGAT-ATGAGGCC-ACTG-TGTGACACTCATACTTGTGCC-AATAA  935