BAC Information

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BAC

Clone NameB6Ng01-073H09
Chromosome5 (Build37)
Map Location 84,220,490 - 84,343,428
singlet/doubletdoublet
Overlap geneLOC231368
Upstream geneLOC100039434, Srd5a2l2, LOC100039608
Downstream geneEpha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073H09.bB6Ng01-073H09.g
ACCDH890586DH890587
length1,151666
definitionDH890586|Mus musculus domesticus DNA, BAC clone: B6Ng01-073H09, 5' end.DH890587|Mus musculus domesticus DNA, BAC clone: B6Ng01-073H09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,220,490 - 84,221,643)(84,342,763 - 84,343,428)
sequence
gaattcccttttccctagtacagaagactatctgtattctctctgtgttg
tggagtataattttaaccttatgtatatgcacactatttgtatactgatg
aggcattttccacttctctgtccctatttcaaagccctgattacttaaat
ttctttctgcttcttaccccgtgaaattagtccttggtacttgaatcagg
atagaacgcattctcatatatctaacctcaattagattgggttatctcat
cacaacactgcatgctaaactataactatattaaatacataaatcaaaaa
atgattaactgtaaattgcaacattttcaggcttaaggcttacttaacag
actgttggagtttactttcttgctttccattgaaggaattttaaaagaaa
atatctgacgaagtgttggaataacaaatgatttcttaagaaaataagta
atatgattaggaattatttttctcattcttagaaggcaactctatattcc
tcagtcatcacgtttacctccctctctccaggtatcccttcttactgtca
tttatacttcatcccccctttatttctgtcttgttttcattttacctctc
tgactcaaaaatccaaaattcaccctgtgatggagtcagagtctcaggca
cttcagccaaagttggcattactatttccatgtgtttctgaagcacaata
tctctgacaatgtgaagaaaactttgcagactcacaagggaaaagcggca
ggagtgcagaaacttcttgctgtttaaagaactgcataaatgtttctcta
aatttacatgtggatagctgagtaactaattcatgaaatccatcttataa
aaagacaaaaccactaaagtctgagaatgctagtttatatcattttaagt
ggagtttgacattttaagggggaaaagtagcagtattgtatagacataga
atgatagtcctccaaatggttttaactagaaatatttgtgacttccaact
tgctgaattgcatgcatattttgtgaaatcagagataaaagggatgccat
ctgctagtcaactgttcatccaagactgttactgacaatatctatgggat
tcagcattgtttgaaacaacagaatgttatctatgtgggggagaaacaaa
a
gaattctcctcgtgcttatgacatacaatttacacataacaccatttcta
ttttatcatccattgtaagatttttaagatcaggcttttccaaggtacta
gacagcaggaagttaatgtcagttaggtttgctgggaaaggtaagaagtg
ctatcccctaaaatttgtaacagcatagttctttagtaaatgtctaaggg
tttctgtattgctagcaatcacagggagcagatgcaatgttctacaactt
atgggcatcccaatcccccgtgcaccttcataccaatacctttgcattat
ttttgtgcacagaacctggcacggaggtgaaaattcttgttattaaaaat
tatgtagatttttttacatatttgaaaaaatgtacaatgtttcatatttc
agtgtgtaagttttattttaagttttaggtgttgaattattttatatagc
ttccatatgtcttctataatttcttcttatataggttctttctcacagaa
tcatctagtactaaactaatctatatcaatttctacttccttatatttac
atagtagacaaaaagggacaggtgtgatttggaatatgctgtggctgaag
aagtcctttttaaaacatgggatttgattaaagacaggagtgaataggga
gggagggagggaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_84220490_84221643
seq2: B6Ng01-073H09.b_43_1193

seq1  GAATTCCCTTTTCCCTAGTACAGAAGACTATCTGTATTCTCTCTGTGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTTTCCCTAGTACAGAAGACTATCTGTATTCTCTCTGTGTTG  50

seq1  TGGAGTATAATTTTAACCTTATGTATATGCACACTATTTGTATACTGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTATAATTTTAACCTTATGTATATGCACACTATTTGTATACTGATG  100

seq1  AGGCATTTTCCACTTCTCTGTCCCTATTTCAAAGCCCTGATTACTTAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTTTCCACTTCTCTGTCCCTATTTCAAAGCCCTGATTACTTAAAT  150

seq1  TTCTTTCTGCTTCTTACCCCGTGAAATTAGTCCTTGGTACTTGAATCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTGCTTCTTACCCCGTGAAATTAGTCCTTGGTACTTGAATCAGG  200

seq1  ATAGAACGCATTCTCATATATCTAACCTCAATTAGATTGGGTTATCTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACGCATTCTCATATATCTAACCTCAATTAGATTGGGTTATCTCAT  250

seq1  CACAACACTGCATGCTAAACTATAACTATATTAAATACATAAATCAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACACTGCATGCTAAACTATAACTATATTAAATACATAAATCAAAAA  300

seq1  ATGATTAACTGTAAATTGCAACATTTTCAGGCTTAAGGCTTACTTAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTAACTGTAAATTGCAACATTTTCAGGCTTAAGGCTTACTTAACAG  350

seq1  ACTGTTGGAGTTTACTTTCTTGCTTTCCATTGAAGGAATTTTAAAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGGAGTTTACTTTCTTGCTTTCCATTGAAGGAATTTTAAAAGAAA  400

seq1  ATATCTGACGAAGTGTTGGAATAACAAATGATTTCTTAAGAAAATAAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGACGAAGTGTTGGAATAACAAATGATTTCTTAAGAAAATAAGTA  450

seq1  ATATGATTAGGAATTATTTTTCTCATTCTTAGAAGGCAACTCTATATTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATTAGGAATTATTTTTCTCATTCTTAGAAGGCAACTCTATATTCC  500

seq1  TCAGTCATCACGTTTACCTCCCTCTCTCCAGGTATCCCTTCTTACTGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCATCACGTTTACCTCCCTCTCTCCAGGTATCCCTTCTTACTGTCA  550

seq1  TTTATACTTCATCCCCCCTTTATTTCTGTCTTGTTTTCATTTTACCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACTTCATCCCCCCTTTATTTCTGTCTTGTTTTCATTTTACCTCTC  600

seq1  TGACTCAAAAATCCAAAATTCACCCTGTGATGGAGTCAGAGTCTCAGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCAAAAATCCAAAATTCACCCTGTGATGGAGTCAGAGTCTCAGGCA  650

seq1  CTTCAGCCAAAGTTGGCATTACTATTTCCATGTGTTTCTGAAGCACAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCCAAAGTTGGCATTACTATTTCCATGTGTTTCTGAAGCACAATA  700

seq1  TCTCTGACAATGTGAAGAAAACTTTGCAGACTCACAAGGGAAAAGCGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGACAATGTGAAGAAAACTTTGCAGACTCACAAGGGAAAAGCGGCA  750

seq1  GGAGTGCAGAAACTTCTTGCTGTTTAAAGAACTGCATAAATGTTTCTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGCAGAAACTTCTTGCTGTTTAAAGAACTGCATAAATGTTTCTCTA  800

seq1  AATTTACATGTGGATAGCTGAGTAACTAATTCATGAAATCCATCTTATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACATGTGGATAGCTGAGTAACTAATTCATGAAATCCATCTTATAA  850

seq1  AAAGACAAAACCACTAAAGTCTGAGAATGCTAGTTTATATCATTTAAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAAGACAAAACCACTAAAGTCTGAGAATGCTAGTTTATATCATTTTAAGT  900

seq1  GGAGTTTGACATTTTAAGGGGGAAAAGTAGCAGTATTGTATAGACAATAG  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGAGTTTGACATTTTAAGGGGGAAAAGTAGCAGTATTGTATAGAC-ATAG  949

seq1  AATGATAGT-CTCCAAATGGTTTTAACTAGAAATATTTTGTGACTTCCAA  999
      ||||||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  AATGATAGTCCTCCAAATGGTTTTAACTAGAAATA-TTTGTGACTTCCAA  998

seq1  CTTGCTGAATTGCATGCATATTTTGTGAAATCAGGAGATAAAAGGGATGC  1049
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTTGCTGAATTGCATGCATATTTTGTGAAATCA-GAGATAAAAGGGATGC  1047

seq1  CATCTGCTAGTCAACTGTTCATCCAAAGACTGTTACTGAACAAATACTAT  1099
      |||||||||||||||||||||||| ||||||||||||| ||||   ||||
seq2  CATCTGCTAGTCAACTGTTCATCC-AAGACTGTTACTG-ACAATATCTAT  1095

seq1  -GGATCCAGCATTGTTTGATACAACAAGGAATGTAATC-ATG-GGGGGAG  1146
       |||| ||||||||||||| ||||||  |||||| ||| ||| |||||||
seq2  GGGATTCAGCATTGTTTGAAACAACA--GAATGTTATCTATGTGGGGGAG  1143

seq1  AAACAAAA  1154
      ||||||||
seq2  AAACAAAA  1151

seq1: chr5_84342763_84343428
seq2: B6Ng01-073H09.g_68_733 (reverse)

seq1  TCCCTCCCTCCCTCCCTCCCTATTCACTCCTGTCTTTAATCAAATCCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCTCCCTCCCTCCCTATTCACTCCTGTCTTTAATCAAATCCCAT  50

seq1  GTTTTAAAAAGGACTTCTTCAGCCACAGCATATTCCAAATCACACCTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAAAAGGACTTCTTCAGCCACAGCATATTCCAAATCACACCTGTC  100

seq1  CCTTTTTGTCTACTATGTAAATATAAGGAAGTAGAAATTGATATAGATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTGTCTACTATGTAAATATAAGGAAGTAGAAATTGATATAGATTA  150

seq1  GTTTAGTACTAGATGATTCTGTGAGAAAGAACCTATATAAGAAGAAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGTACTAGATGATTCTGTGAGAAAGAACCTATATAAGAAGAAATTA  200

seq1  TAGAAGACATATGGAAGCTATATAAAATAATTCAACACCTAAAACTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGACATATGGAAGCTATATAAAATAATTCAACACCTAAAACTTAAA  250

seq1  ATAAAACTTACACACTGAAATATGAAACATTGTACATTTTTTCAAATATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTTACACACTGAAATATGAAACATTGTACATTTTTTCAAATATG  300

seq1  TAAAAAAATCTACATAATTTTTAATAACAAGAATTTTCACCTCCGTGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAATCTACATAATTTTTAATAACAAGAATTTTCACCTCCGTGCCA  350

seq1  GGTTCTGTGCACAAAAATAATGCAAAGGTATTGGTATGAAGGTGCACGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGTGCACAAAAATAATGCAAAGGTATTGGTATGAAGGTGCACGGG  400

seq1  GGATTGGGATGCCCATAAGTTGTAGAACATTGCATCTGCTCCCTGTGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGGGATGCCCATAAGTTGTAGAACATTGCATCTGCTCCCTGTGATT  450

seq1  GCTAGCAATACAGAAACCCTTAGACATTTACTAAAGAACTATGCTGTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCAATACAGAAACCCTTAGACATTTACTAAAGAACTATGCTGTTAC  500

seq1  AAATTTTAGGGGATAGCACTTCTTACCTTTCCCAGCAAACCTAACTGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTAGGGGATAGCACTTCTTACCTTTCCCAGCAAACCTAACTGACA  550

seq1  TTAACTTCCTGCTGTCTAGTACCTTGGAAAAGCCTGATCTTAAAAATCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTCCTGCTGTCTAGTACCTTGGAAAAGCCTGATCTTAAAAATCTT  600

seq1  ACAATGGATGATAAAATAGAAATGGTGTTATGTGTAAATTGTATGTCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGATGATAAAATAGAAATGGTGTTATGTGTAAATTGTATGTCATA  650

seq1  AGCACGAGGAGAATTC  666
      ||||||||||||||||
seq2  AGCACGAGGAGAATTC  666