BAC Information

Click to search

BAC

Clone NameB6Ng01-074C12
Chromosome5 (Build37)
Map Location 138,329,677 - 138,542,364
singlet/doubletdoublet
Overlap geneLOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1
Upstream geneEmid2, LOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016
Downstream geneZscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074C12.bB6Ng01-074C12.g
ACCDH891084DH891085
length761818
definitionDH891084|Mus musculus domesticus DNA, BAC clone: B6Ng01-074C12, 5' end.DH891085|Mus musculus domesticus DNA, BAC clone: B6Ng01-074C12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,541,793 - 138,542,364)(138,329,677 - 138,330,489)
sequence
gaattctccgatgcaaaataaggtatgagtttcggttgaaagcttttcca
cattcgctacattcatagggcttctctcctgtatggattctctggtgctt
cgtgaggtctgagctctggctgaaggctttgccacactcgttacattcat
agggcttctctccagagtggatgcgctggtgcaggatgagatttgagcta
tggctgaaggctttgccacactcgttacattcatgaggtttctctcccgt
gtggattcgctgatgaaggacaaggtttgaattgagactgaaggctttgc
cacactcgttacattcgtagggtttctctccagtgtggatgattttatgg
cggataaggcttgagcttcttgtgaaacatttcccacactcatcgcatct
gtgagtctttgctcccgacggagcctcctctggggtgttattaaagtttg
cgctcaggctaaagcttctccccagacctttacccttctcccgcgggccc
cgctctcctgtgctgggctttttttccttggctgtaggtggcccaggctc
tttcttttctttgccagttttctcttcaggatttttctgttgcctttcga
ctactctgccctgctgttcccgttttctctccaaattccttctggaatct
ccctgctatctccccatgtgaggtggaatcttcttttgacttcagccttt
gaggtttgactcatttcccattcctgttctcagagcctggcatgataagt
aagaaatacaa
gaattctgcaggatccaatagagaaaatacctttggggccaactaaccag
ctctactctctggagtccaggtatctccattgagatcccctttttctact
tgtactggagttggccaaggatctgcagatgaacatagcctggagagaaa
cacttccatgggcaattcatctacaactctagcctgcctttcacccatga
gcacttcaaggtccaactcatcctgaactagacacagggtcagacatctg
gagtcctcagaatcttttacttgaaggagaataaccagggtatatacttc
tgccgagtttatctgcgaacaacagaaggcatgattgggtttcagctggt
tgctggggcacagctcaggctacggctcaggttttgaaacctgtgtcttg
cttgtccctaaatgtcacctcaggcttctcaactctgagtttcgtttcat
attcctttcccttagctctgtcagcagcatctttccttgcagttttgaca
agtatttgctgcctcctctgccatagtctgtcattgtcttctcagacaga
accacataccagtcttcagcatgtgctccacccctgtctcacactctttt
ttgttccaattcttacctctatgctgcccaggtctacccttgcccatgac
ctcagggtagatgaactttttgcacaatggagctgactctcttggtcctg
tggcggggctacaatttggtccccttatgcagcttctacacatagttcca
accgaaaggccgaaacatatagtagatgccattgggtgttcttgatgtgc
tatgggccaactgtaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_138541793_138542364
seq2: B6Ng01-074C12.b_226_801 (reverse)

seq1  TTGTATTTCTTACTTATCATGCCAGGCTCTGAGAACAGGAATGGG-AATG  49
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTGTATTTCTTACTTATCATGCCAGGCTCTGAGAACAGGAATGGGAAATG  50

seq1  AGTC-AACCTCAAAGGCTGAAGTC-AAAGAAGATTCCACCTCACATGGGG  97
      |||| ||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGTCAAACCTCAAAGGCTGAAGTCAAAAGAAGATTCCACCTCACATGGGG  100

seq1  AGATAGCAGGGAGATTCCAGAAGGAATTTGGAGAG-AAACGGGAACAGCA  146
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGATAGCAGGGAGATTCCAGAAGGAATTTGGAGAGAAAACGGGAACAGCA  150

seq1  GGGCAGAGTAGTCGAAAGGCAACAGAAAAATCCTGAAGAGAAAACTGGCA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGAGTAGTCGAAAGGCAACAGAAAAATCCTGAAGAGAAAACTGGCA  200

seq1  AAGAAAAGAAAGAGCCTGGGCCACCTACAGCCAAGGAAAAAAAGCCCAGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGAAAGAGCCTGGGCCACCTACAGCCAAGGAAAAAAAGCCCAGC  250

seq1  ACAGGAGAGCGGGGCCCGCGGGAGAAGGGTAAAGGTCTGGGGAGAAGCTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGAGCGGGGCCCGCGGGAGAAGGGTAAAGGTCTGGGGAGAAGCTT  300

seq1  TAGCCTGAGCGCAAACTTTAATAACACCCCAGAGGAGGCTCCGTCGGGAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGAGCGCAAACTTTAATAACACCCCAGAGGAGGCTCCGTCGGGAG  350

seq1  CAAAGACTCACAGATGCGATGAGTGTGGGAAATGTTTCACAAGAAGCTCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACTCACAGATGCGATGAGTGTGGGAAATGTTTCACAAGAAGCTCA  400

seq1  AGCCTTATCCGCCATAAAATCATCCACACTGGAGAGAAACCCTACGAATG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTATCCGCCATAAAATCATCCACACTGGAGAGAAACCCTACGAATG  450

seq1  TAACGAGTGTGGCAAAGCCTTCAGTCTCAATTCAAACCTTGTCCTTCATC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGAGTGTGGCAAAGCCTTCAGTCTCAATTCAAACCTTGTCCTTCATC  500

seq1  AGCGAATCCACACGGGAGAGAAACCTCATGAATGTAACGAGTGTGGCAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAATCCACACGGGAGAGAAACCTCATGAATGTAACGAGTGTGGCAAA  550

seq1  GCCTTCAGCCATAGCTCAAATCTCAT  572
      ||||||||||||||||||||||||||
seq2  GCCTTCAGCCATAGCTCAAATCTCAT  576

seq1: chr5_138329677_138330489
seq2: B6Ng01-074C12.g_71_887

seq1  GAATTCTGCAGGATCCAATAGAGAAAATACCTTTGGGGCCAACTAACCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGGATCCAATAGAGAAAATACCTTTGGGGCCAACTAACCAG  50

seq1  CTCTACTCTCTGGAGTCCAGGTATCTCCATTGAGATCCCCTTTTTCTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTCTCTGGAGTCCAGGTATCTCCATTGAGATCCCCTTTTTCTACT  100

seq1  TGTACTGGAGTTGGCCAAGGATCTGCAGATGAACATAGCCTGGAGAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGGAGTTGGCCAAGGATCTGCAGATGAACATAGCCTGGAGAGAAA  150

seq1  CACTTCCATGGGCAATTCATCTACAACTCTAGCCTGCCTTTCACCCATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCATGGGCAATTCATCTACAACTCTAGCCTGCCTTTCACCCATGA  200

seq1  GCACTTCAAGGTCCAACTCATCCTGAACTAGACACAGGGTCAGACATCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTCAAGGTCCAACTCATCCTGAACTAGACACAGGGTCAGACATCTG  250

seq1  GAGTCCTCAGAATCTTTTACTTGAAGGAGAATAACCAGGGTATATACTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTCAGAATCTTTTACTTGAAGGAGAATAACCAGGGTATATACTTC  300

seq1  TGCCGAGTTTATCTGCGAACAACAGAAGGCATGATTGGGTTTCAGCTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGAGTTTATCTGCGAACAACAGAAGGCATGATTGGGTTTCAGCTGGT  350

seq1  TGCTGGGGCACAGCTCAGGCTACGGCTCAGGTTTTGAAACCTGTGTCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGGCACAGCTCAGGCTACGGCTCAGGTTTTGAAACCTGTGTCTTG  400

seq1  CTTGTCCCTAAATGTCACCTCAGGCTTCTCAACTCTGAGTTTCGTTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCCTAAATGTCACCTCAGGCTTCTCAACTCTGAGTTTCGTTTCAT  450

seq1  ATTCCTTTCCCTTAGCTCTGTCAGCAGCATCTTTCCTTGCAGTTTTGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTCCCTTAGCTCTGTCAGCAGCATCTTTCCTTGCAGTTTTGACA  500

seq1  AGTATTTGCTGCCTCCTCTGCCATAGTCTGTCATTGTCTTCTCAGACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTGCTGCCTCCTCTGCCATAGTCTGTCATTGTCTTCTCAGACAGA  550

seq1  ACCACATACCAGTCTTCAGCATGTGCTCCACCCCTGTCTCACACTC-TTT  599
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACCACATACCAGTCTTCAGCATGTGCTCCACCCCTGTCTCACACTCTTTT  600

seq1  TTGTTCCAATTCTTACCTCTATGCTGCCCAGGTCTACCCTTGCCCATGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCAATTCTTACCTCTATGCTGCCCAGGTCTACCCTTGCCCATGAC  650

seq1  CTCAGGGTAGATGAAC-TTTTGCACAATGGAGCTGACTCTCTTGGTCCTG  698
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTCAGGGTAGATGAACTTTTTGCACAATGGAGCTGACTCTCTTGGTCCTG  700

seq1  TGGCGGGGCTACAA-TTGGTCCCCTTATGCAGCTTCTACACATAGTTCCA  747
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGGCGGGGCTACAATTTGGTCCCCTTATGCAGCTTCTACACATAGTTCCA  750

seq1  ACCG-AAGGCCGAAACATATAGTAGATGCCATTGGGTGTTCTTGATGTGC  796
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAAAGGCCGAAACATATAGTAGATGCCATTGGGTGTTCTTGATGTGC  800

seq1  TATGGGCCAACTGTAAT  813
      |||||||||||||||||
seq2  TATGGGCCAACTGTAAT  817