BAC Information

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BAC

Clone NameB6Ng01-074J03
Chromosome5 (Build37)
Map Location 55,225,903 - 55,362,086
singlet/doubletdoublet
Overlap genenone
Upstream geneTbc1d19, Stim2, EG666377, LOC666380
Downstream geneEG666405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074J03.bB6Ng01-074J03.g
ACCDH891381DH891382
length758584
definitionDH891381|Mus musculus domesticus DNA, BAC clone: B6Ng01-074J03, 5' end.DH891382|Mus musculus domesticus DNA, BAC clone: B6Ng01-074J03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,225,903 - 55,226,657)(55,361,503 - 55,362,086)
sequence
gaattctttcttgatgcactaggtagtacagttttcttggaggatatttt
tgaggggagaggtaaataaatacagtagagttgatagacaaaggcaaagt
ccagcttatctttttgttttactggttaaatttgttctttgacaatttca
tacatgtatattatgcattcagcttactcttacaccctgtgctctcatct
ccctcccatccctgtcatcttccatatcctacccacaggtcctttcccca
aattcatgttctctctctctctctccctctctctctccctcaactaactc
tctctctctctctttctctctctctctctcaaattcatgaacacagcatt
ttagaagctagtttgcttctgtaatgtgccttttctttttcttttaagtc
tattgatcacaagtatcaccctgttatgtggggtagttttgtaagaaaag
atctcatgctagttcctaattattttggcatgcaaaatcgcacgcctatg
actgtgaagaaacatgatagtggcaatttgttccaactactctaagtctt
ttaatccagttgaagtatagtaatgccagcctagaaaaattattacttaa
tatctctcatccatctctctcttatgtggaaaatcaacctctagaccagc
tgacagactcacaatggcaactctgttttaatcttggtgcaagggttcta
gaacatcattttcttattagaaaaatcctattctcttttagactatttcc
ctgagtaa
gaattcagagaaatcagggttacagatccaattagtacctacagcgaagg
aaagggtggataatgtggagtagttaaatatcaataagaaccttcaagta
gaaagctctctgtgatatgctgagatgaatggccataaggtttccatggg
gacagttgggggcaaggaagatatatcaatgatataaagagatgaagaat
ggcagcgagagtttgaaagatggagaggaatttctgttactcttttattt
aaaggatagggagggaaaggaggaggaagacacagaagaaaagagctttc
cagatgtcacacattaaagggagttagatttgcagccagccaaaaataaa
tgcaacaaagagtaagtaaagaagaaagaggttgtcattgacaaagtgga
taacttctggataatctatttttagcatctagggtgacagctggcccttc
attgcattgcctgtatgctctttgagtaagctgtctgtttcttatcgtca
tctgtttctggaggttctttcaaaagtattagtttaatatttgctgttgt
agtagattcctctcctctcctctcctctcctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_55225903_55226657
seq2: B6Ng01-074J03.b_45_801

seq1  GAATTCTTTCTTGATGCACTAGGTAGTACAGTTTTCTTGGAGGATATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTGATGCACTAGGTAGTACAGTTTTCTTGGAGGATATTTT  50

seq1  TGAGGGGAGAGGTAAATAAATACAGTAGAGTTGATAGACAAAGGCAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGAGAGGTAAATAAATACAGTAGAGTTGATAGACAAAGGCAAAGT  100

seq1  CCAGCTTATCTTTTTGTTTTACTGGTTAAATTTGTTCTTTGACAATTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTATCTTTTTGTTTTACTGGTTAAATTTGTTCTTTGACAATTTCA  150

seq1  TACATGTATATTATGCATTCAGCTTACTCTTACACCCTGTGCTCTCATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTATATTATGCATTCAGCTTACTCTTACACCCTGTGCTCTCATCT  200

seq1  CCCTCCCATCCCTGTCATCTTCCATATCCTACCCACAGGTCCTTTCCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCATCCCTGTCATCTTCCATATCCTACCCACAGGTCCTTTCCCCA  250

seq1  AATTCATGTTCTCTCTCTCTCTCTCCCTCTCTCTCTCCCTCTTCTCTCTC  300
      |||||||||||||||||||||||||||||||||||||||||  ||  |||
seq2  AATTCATGTTCTCTCTCTCTCTCTCCCTCTCTCTCTCCCTCAACTAACTC  300

seq1  TCTCTCTCTCTCTTTCTCTCTCTCTCTCTCAAATTCATGAACACAGCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTTTCTCTCTCTCTCTCTCAAATTCATGAACACAGCATT  350

seq1  TTAGAAGCTAGTTTGCTTCTGTAATGTGCCTTTTCTTTTTCTTTTAAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGCTAGTTTGCTTCTGTAATGTGCCTTTTCTTTTTCTTTTAAGTC  400

seq1  TATTGATCACAAGTATCACCCTGTTATGTGGGGTAGTTTTGTAAGAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATCACAAGTATCACCCTGTTATGTGGGGTAGTTTTGTAAGAAAAG  450

seq1  ATCTCATGCTAGTTCCTAATTATTTTGGCATGCAAAATCGCACGCCTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATGCTAGTTCCTAATTATTTTGGCATGCAAAATCGCACGCCTATG  500

seq1  ACTGTGAAGAAACATGATAGTGGCAATTTGTTCCAATTACTCTAAGTCTT  550
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACTGTGAAGAAACATGATAGTGGCAATTTGTTCCAACTACTCTAAGTCTT  550

seq1  TTAATCCAGTTGAAGTATAGTAATGCCAGCCTAGAAAAATTATTACTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCAGTTGAAGTATAGTAATGCCAGCCTAGAAAAATTATTACTTAA  600

seq1  TATCTCTCATCCATCTCTCTCTTATGTGGAAAATCAACCTCTAAGACCAG  650
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TATCTCTCATCCATCTCTCTCTTATGTGGAAAATCAACCTCT-AGACCAG  649

seq1  CTGACAGACTCACAATGGCAACTCTGTTTTAATCTTGGTGCAAGGGTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGACTCACAATGGCAACTCTGTTTTAATCTTGGTGCAAGGGTTCT  699

seq1  AGAACATCA-TTTCTTATTTG-AAAATCCTATTCTCTTTTAGTCTA-TTC  747
      ||||||||| ||||||||| | |||||||||||||||||||| ||| |||
seq2  AGAACATCATTTTCTTATTAGAAAAATCCTATTCTCTTTTAGACTATTTC  749

seq1  CCTGAGTA  755
      ||||||||
seq2  CCTGAGTA  757

seq1: chr5_55361503_55362086
seq2: B6Ng01-074J03.g_69_652 (reverse)

seq1  GAGAGGAGAGGAGAGGAGAGGAGAGGAATCTACTACAACAGCAAATATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAGAGGAGAGGAGAGGAGAGGAATCTACTACAACAGCAAATATTA  50

seq1  AACTAATACTTTTGAAAGAACCTCCAGAAACAGATGACGATAAGAAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATACTTTTGAAAGAACCTCCAGAAACAGATGACGATAAGAAACAG  100

seq1  ACAGCTTACTCAAAGAGCATACAGGCAATGCAATGAAGGGCCAGCTGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTACTCAAAGAGCATACAGGCAATGCAATGAAGGGCCAGCTGTCA  150

seq1  CCCTAGATGCTAAAAATAGATTATCCAGAAGTTATCCACTTTGTCAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGATGCTAAAAATAGATTATCCAGAAGTTATCCACTTTGTCAATGA  200

seq1  CAACCTCTTTCTTCTTTACTTACTCTTTGTTGCATTTATTTTTGGCTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTCTTTCTTCTTTACTTACTCTTTGTTGCATTTATTTTTGGCTGGC  250

seq1  TGCAAATCTAACTCCCTTTAATGTGTGACATCTGGAAAGCTCTTTTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATCTAACTCCCTTTAATGTGTGACATCTGGAAAGCTCTTTTCTTC  300

seq1  TGTGTCTTCCTCCTCCTTTCCCTCCCTATCCTTTAAATAAAAGAGTAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTTCCTCCTCCTTTCCCTCCCTATCCTTTAAATAAAAGAGTAACA  350

seq1  GAAATTCCTCTCCATCTTTCAAACTCTCGCTGCCATTCTTCATCTCTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCCTCTCCATCTTTCAAACTCTCGCTGCCATTCTTCATCTCTTTA  400

seq1  TATCATTGATATATCTTCCTTGCCCCCAACTGTCCCCATGGAAACCTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTGATATATCTTCCTTGCCCCCAACTGTCCCCATGGAAACCTTAT  450

seq1  GGCCATTCATCTCAGCATATCACAGAGAGCTTTCTACTTGAAGGTTCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTCATCTCAGCATATCACAGAGAGCTTTCTACTTGAAGGTTCTTA  500

seq1  TTGATATTTAACTACTCCACATTATCCACCCTTTCCTTCGCTGTAGGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATTTAACTACTCCACATTATCCACCCTTTCCTTCGCTGTAGGTAC  550

seq1  TAATTGGATCTGTAACCCTGATTTCTCTGAATTC  584
      ||||||||||||||||||||||||||||||||||
seq2  TAATTGGATCTGTAACCCTGATTTCTCTGAATTC  584