BAC Information

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BAC

Clone NameB6Ng01-074M16
Chromosome13 (Build37)5 (Build37)
Map Location 75,524,417 - 75,525,564125,892,905 - 125,893,021
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666670, LOC634386, LOC100042547, LOC666683, LOC547136, BC012278, LOC434490, Arts1, Cast, LOC622204, EG544954, Pcsk1
Downstream geneLOC672443, LOC666764, LOC100042606, LOC100042986, Ell2, LOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276, Mctp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074M16.bB6Ng01-074M16.g
ACCDH891540DH891541
length1,136769
definitionDH891540|Mus musculus domesticus DNA, BAC clone: B6Ng01-074M16, 5' end.DH891541|Mus musculus domesticus DNA, BAC clone: B6Ng01-074M16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(75,524,417 - 75,525,564)(125,892,905 - 125,893,021)
sequence
gaattcaaaggaatgaatgccaatgtaatcagtggtcttacaagtcatga
tgggaatttgaatttattctatgtgttataacagaactaggaagtgatat
gactttgtattttataaaactcagttcagtctctgtgtgaagaatggacc
atatttagttacagatagaacgaagaaggttagttagaaagctgttgtat
aacctcagtttaagaaggaacactgcaaagcttcagactgaaaggaagat
aaaaattgcatatactcacttttcagtagactttctcagttaccttttca
ccatgattcccaaaccagtattttccatcctctatgcctggatgtagaca
tgccttgaaatatcactatagccctttcttactgtacttaactctatttc
cactcttggctttgttgggttggtttccaccaaagagtgtgcgagctagt
tacagtccagagaacactccttagttatctctgtcatgctgctcattctt
tccatgggtttgctttcctttttgtaaatccttttctctaccaagagaaa
cataaggttctatgttcttttctctatctggaaaaattcacagatctgaa
tttttatactgttttaatagtagttattttgtgtataaagtaatacaaag
ataaatagcaataaaaatatagaaaacaccttaatttattttacgtaagg
aaaaaaaaagagtatgggaagttactattcgtttttcctaaaccataagt
atatctgggagaggtagggcacaatttcagtaattttaaacagaacgtaa
tggtttctgcaattattgacaagaatatgataaaacctatcattcattga
gctgcctctatgtacttcctgctgtagccattttctacatgaggtattac
attcttgcttgctctcccacaggaatggggtacttagccaggaagtaatt
ggctcaaggtcctgatcaaagatttaaagccaggcttttctcttggcgtt
acactgctattctagatgagggccctgaaagtgcagggtcatctatgagt
ggtccaggaccctctattacttggctgtgttactttgttttcctgaccca
ggccctctatgctctaattttatccaggttagactg
gaattctctgtttaacacttaccccatttttcaattgagttatttggatt
tttagaggttaactcttgatttctttatatattttgaatattagccattt
attggatacagagttagtaaagactttttcccaattttgctgattttttt
tcaactatgtcgtttgtcttacagaagctttccagtttcacgaggtccca
tttatcaattcttgatcttagagcatgagccattggagttctgtttagga
aatttcccccctgtggcaatgagttcaacgctctttcccactttctcttc
tattagattcagtgtatctggttttatgttgaggttcttgatccacttgg
acttgagctttgtccaaggtgacaaatatgggtctattttcatttttcta
catacagacagctagttagagcagcacaatttattgaagatgctttcttt
tttccattgtatatttttggcttccttgtcaaagaacaagtgtccataag
tgtgtggttctgtttctgggtcttcagtcttattccatcaatcaatgtgc
ctgtctccttaccaatacagtttttatcactattgctctgtagtaaagct
tgaggtcagggatggtgatttccccagctgttctttttattgtcaaaaat
tatgaagccaggcagtggtggcgcacacctttaatcccagcacttgggag
gcagatacaggcagatttctgagttttgaggccagcctggtctacagagt
gagttccaggacagccagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_75524417_75525564
seq2: B6Ng01-074M16.b_49_1184 (reverse)

seq1  CAGTCTAAACATGGATAAAA-TAGAGGCCATAGAGGGGCTGGGTCA-GAA  48
      |||||| ||| ||||||||| |||||  ||||||||| |||||||| |||
seq2  CAGTCT-AACCTGGATAAAATTAGAG--CATAGAGGGCCTGGGTCAGGAA  47

seq1  AACAAAGT-ACACAGCCAAGTAAATAGAGGGTTCCTGGGACCAACCTCAT  97
      |||||||| |||||||||||| ||||||||| |||| ||||||  |||||
seq2  AACAAAGTAACACAGCCAAGT-AATAGAGGG-TCCT-GGACCA--CTCAT  92

seq1  AAGGATGACCCTTGGCACTTTCAGGGCCCTTCATCTAGAATAGCAGTGTA  147
      |  |||||||||  ||||||||||||||| ||||||||||||||||||||
seq2  A--GATGACCCT--GCACTTTCAGGGCCC-TCATCTAGAATAGCAGTGTA  137

seq1  ACCGCCAAGAGAAAAGCCTGGCTTTAAATCTTTGATCAGGACCTTGAGCC  197
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-CGCCAAGAGAAAAGCCTGGCTTTAAATCTTTGATCAGGACCTTGAGCC  186

seq1  AATTACTTCCTGGCTAAGTACCCCATTTCCTGTGGGAGAGCAAGCAAGAA  247
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AATTACTTCCTGGCTAAGTACCCCA-TTCCTGTGGGAGAGCAAGCAAGAA  235

seq1  TGTAATACCTCATGTAGAAAATGGCTACAGCAGGAAGTACATAGAGGCAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATACCTCATGTAGAAAATGGCTACAGCAGGAAGTACATAGAGGCAG  285

seq1  CTCAATGAATGATAGGTTTTATCATATTCTTGTCAATAATTGCAGAAACC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATGAATGATAGGTTTTATCATATTCTTGTCAATAATTGCAGAAACC  335

seq1  ATTACGTTCTGTTTAAAATTACTGAAATTGTGCCCTACCTCTCCCAGATA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACGTTCTGTTTAAAATTACTGAAATTGTGCCCTACCTCTCCCAGATA  385

seq1  TACTTATGGTTTAGGAAAAACGAATAGTAACTTCCCATACTCTTTTTTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATGGTTTAGGAAAAACGAATAGTAACTTCCCATACTCTTTTTTTT  435

seq1  TCCTTACGTAAAATAAATTAAGGTGTTTTCTATATTTTTATTGCTATTTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACGTAAAATAAATTAAGGTGTTTTCTATATTTTTATTGCTATTTA  485

seq1  TCTTTGTATTACTTTATACACAAAATAACTACTATTAAAACAGTATAAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTATTACTTTATACACAAAATAACTACTATTAAAACAGTATAAAA  535

seq1  ATTCAGATCTGTGAATTTTTCCAGATAGAGAAAAGAACATAGAACCTTAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGATCTGTGAATTTTTCCAGATAGAGAAAAGAACATAGAACCTTAT  585

seq1  GTTTCTCTTGGTAGAGAAAAGGATTTACAAAAAGGAAAGCAAACCCATGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTTGGTAGAGAAAAGGATTTACAAAAAGGAAAGCAAACCCATGG  635

seq1  AAAGAATGAGCAGCATGACAGAGATAACTAAGGAGTGTTCTCTGGACTGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGAGCAGCATGACAGAGATAACTAAGGAGTGTTCTCTGGACTGT  685

seq1  AACTAGCTCGCACACTCTTTGGTGGAAACCAACCCAACAAAGCCAAGAGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGCTCGCACACTCTTTGGTGGAAACCAACCCAACAAAGCCAAGAGT  735

seq1  GGAAATAGAGTTAAGTACAGTAAGAAAGGGCTATAGTGATATTTCAAGGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAGAGTTAAGTACAGTAAGAAAGGGCTATAGTGATATTTCAAGGC  785

seq1  ATGTCTACATCCAGGCATAGAGGATGGAAAATACTGGTTTGGGAATCATG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTACATCCAGGCATAGAGGATGGAAAATACTGGTTTGGGAATCATG  835

seq1  GTGAAAAGGTAACTGAGAAAGTCTACTGAAAAGTGAGTATATGCAATTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAGGTAACTGAGAAAGTCTACTGAAAAGTGAGTATATGCAATTTT  885

seq1  TATCTTCCTTTCAGTCTGAAGCTTTGCAGTGTTCCTTCTTAAACTGAGGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCCTTTCAGTCTGAAGCTTTGCAGTGTTCCTTCTTAAACTGAGGT  935

seq1  TATACAACAGCTTTCTAACTAACCTTCTTCGTTCTATCTGTAACTAAATA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAACAGCTTTCTAACTAACCTTCTTCGTTCTATCTGTAACTAAATA  985

seq1  TGGTCCATTCTTCACACAGAGACTGAACTGAGTTTTATAAAATACAAAGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCATTCTTCACACAGAGACTGAACTGAGTTTTATAAAATACAAAGT  1035

seq1  CATATCACTTCCTAGTTCTGTTATAACACATAGAATAAATTCAAATTCCC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCACTTCCTAGTTCTGTTATAACACATAGAATAAATTCAAATTCCC  1085

seq1  ATCATGACTTGTAAGACCACTGATTACATTGGCATTCATTCCTTTGAATT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGACTTGTAAGACCACTGATTACATTGGCATTCATTCCTTTGAATT  1135

seq1  C  1148
      |
seq2  C  1136

seq1: chr5_125892905_125893021
seq2: B6Ng01-074M16.g_721_838 (reverse)

seq1  CCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTC-AAACTCA  49
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAAACTCA  50

seq1  GAAATCCGCCTGCTTCTGCCTCCCAAGTGCTGGGACTAAAGGCATGCGCC  99
      |||||| |||||  ||||||||||||||||||||| ||||||  ||||||
seq2  GAAATCTGCCTGTATCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCC  100

seq1  ACCACTGCCCGGCTTCAT  117
      ||||||||| ||||||||
seq2  ACCACTGCCTGGCTTCAT  118