BAC Information

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BAC

Clone NameB6Ng01-074O09
Chromosome5 (Build37)
Map Location 26,379,944 - 26,447,621
singlet/doubletdoublet
Overlap geneEG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689
Upstream geneLOC100038949, EG272714, EG545739, Speer4a
Downstream geneLOC664837, 4930584F24Rik, Dpp6, B930011P16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074O09.bB6Ng01-074O09.g
ACCDH891618DH891619
length1,0931,125
definitionDH891618|Mus musculus domesticus DNA, BAC clone: B6Ng01-074O09, 5' end.DH891619|Mus musculus domesticus DNA, BAC clone: B6Ng01-074O09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,379,944 - 26,381,044)(26,446,496 - 26,447,621)
sequence
gaattcatgacaccatggatgcagtatggcagtgattacatcatcaagtg
tgtgtccatggggtaagtaaaattatcgacacaaaagatcatcaccttgt
atacccctaggtggctaggctctgactttattatacagccctggctgcct
ggaacttacaaagatccatctctggatgtgagttctaggtctacagcagg
ggatagaacacctgaataaggaagatggtctcaagagtcactacttgcaa
atcaatttttctgcataagaaatagaatttttaagaaataggttttaaaa
ttcaattaatatagagataaaggcaaaaacaaacaatgaaatacaagaac
aagaacatataacttctaaataacataacaataactcaaagaacaaaaat
gaaaacttcaaccaaaactctaaaggaaaattattgttcagcagcatttt
tttgcacttttagcagcacagccctccaggctgctgctcctcttggacac
ttggtagcagtgcagctgcctcagttttctaccaagagtcgttgtctgaa
gagaaaagggaacaacgccctgaatcagccatggcttcctcgttagggcc
tattcccactcaggacatgtgctataagaagattcatctgaggaagattc
atccgaggaagatgatgggtgctgaggatggtgctcagcaggggcctcct
ggcatggcaactcattctgcaagatgctgtcttcttcagctgtggccaat
cccagctctcttgcagcttctgagacctgggagaggaaggcagttactaa
gacacaggaatggtggggatgggcatggccgctctcagctgcattctccc
acttcctcaactttacttgacagtcaacattaatatttaactgaaattac
agatttgaaaactgcagacaggcaaagtattcaaaacagtcacaaaacac
ggactgataaagatcaactcagcttctatcagctccaaacagaacatggc
aaagaagaagacctcagtggatacaggaagaaagaagaaggcacatgcca
cccagatcatgataatgagaagcactcatttgacatttgtact
gaattcagaacagtacttttccatcccctaaggaaggaattgacaaggtc
aaagctgttatgccatgaacttcaagtctttttttgcactgggtattgtg
ggtgttacatggggacagaatgagaccatcaggagtgacagcgggtctaa
gctatgccagttttagggaaggaaatcctacacttcagtccatggcttct
tttagctcctgtagttatctgacattagtgacagggagagaatggtgctc
cagaccaagacctcatgttctcagaactactctgacctcctgtttgtgac
agttcctaccttaactttctttatcaccaattgtagggggcaggcatttc
tacactgtaaacaaataactatcagttgatagacccacagggggattcta
ttcctacttctgggatgttttgtgtttaggggcgggttgggaaattgatc
aatgtgttgactatgttctgccccctgcatgactttttaagccaattcct
tggcgtagagtaacaggtaggatattggagcatctccaagatctcaaata
cttttgaatagtgtatttatcatctgacttgtgaaaccacagggctcagg
gctctgaagccaaattgtaccctggagaagacatctctctggtcctcata
agcacgtttaaggagaatgaggaaacatctgcctacttacatcgcctgat
ctctctagagtgatggtagaactgagatccactgagaagaaatctcatgc
tggcaccaatctcttggtggtgtcacgaggttacaggcatttttccttct
ctgtggtcagtctacactctttgcattctcacattctaatattctggtat
tcatctacctacagtggctcacagacagacaacatccccggtacctgtca
aaagcaaaaagcagtttgagaaggaagagaaggagctgatcaaaagatcc
agctcactaccgaggagacaaatgagctgagagatcgctgatctacgtga
ccgaggatccatgaacaagatgtatacatgctccaaaacctgtgggtgtc
agtctgggggtctgcatgcctccctcatcttatggctttttaaaggtggt
gggatcaggaagctatgccacagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_26379944_26381044
seq2: B6Ng01-074O09.b_48_1140

seq1  GAATTCATGACACCATGGATGCAGTATGGCAGTGATTACATCATCAAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGACACCATGGATGCAGTATGGCAGTGATTACATCATCAAGTG  50

seq1  TGTGTCCATGGGGTAAGTAAAATTATCGACACAAAAGATCATCACCTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCATGGGGTAAGTAAAATTATCGACACAAAAGATCATCACCTTGT  100

seq1  ATACCCCTAGGTGGCTAGGCTCTGACTTTATTATACAGCCCTGGCTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCCTAGGTGGCTAGGCTCTGACTTTATTATACAGCCCTGGCTGCCT  150

seq1  GGAACTTACAAAGATGCATCTCTGGATGTGAGTTCTAGGTCTACAGCAGG  200
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGAACTTACAAAGATCCATCTCTGGATGTGAGTTCTAGGTCTACAGCAGG  200

seq1  GGATAGAACACCTGAATAAGGAAGATGGTCTCAAGAGTCACTACTTGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGAACACCTGAATAAGGAAGATGGTCTCAAGAGTCACTACTTGCAA  250

seq1  ATCAATTTTTCTGCATAAGAAATAGAATTTTTAAGAAATAGGTTTTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTTTTCTGCATAAGAAATAGAATTTTTAAGAAATAGGTTTTAAAA  300

seq1  TTCAATTAATATAGAGATAAAGGCAAAAACAAACAATGAAATACAAGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTAATATAGAGATAAAGGCAAAAACAAACAATGAAATACAAGAAC  350

seq1  AAGAACATATAACTTCTAAATAACATAACAATAACTCAAAGAACAAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACATATAACTTCTAAATAACATAACAATAACTCAAAGAACAAAAAT  400

seq1  GAAAACTTCAACCAAAACTCTAAAGGAAAATTATTGTTCAGCAGCATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTTCAACCAAAACTCTAAAGGAAAATTATTGTTCAGCAGCATTTT  450

seq1  TCTGCACTTTTAGCAGCACAGCCCTCCAGGCTGCTGCTCCTCTTGGACAC  500
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACTTTTAGCAGCACAGCCCTCCAGGCTGCTGCTCCTCTTGGACAC  500

seq1  TTGGTAGCAGTGCAGCTGCCTCAGTTTTCTACCAAGAGTCGTTGTCTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGCAGTGCAGCTGCCTCAGTTTTCTACCAAGAGTCGTTGTCTGAA  550

seq1  GAGAAAAGGGAACAACGCCCTGAATCAGCCATGGCTTCCTCGTTAGGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAGGGAACAACGCCCTGAATCAGCCATGGCTTCCTCGTTAGGGCC  600

seq1  TATTCCCACTCAGGACATGTGCTATAAGAAGATTCATCTGAGGAAGATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCACTCAGGACATGTGCTATAAGAAGATTCATCTGAGGAAGATTC  650

seq1  ATCCGAGGAAGATGATGGGTGCTGGGGATGGTGCTCAGCAGGAGCCTCCT  700
      |||||||||||||||||||||||| ||||||||||||||||| |||||||
seq2  ATCCGAGGAAGATGATGGGTGCTGAGGATGGTGCTCAGCAGGGGCCTCCT  700

seq1  GGCATGGCAACTCATTCTGCAAGATGCTGTCTTCTTCAGCTGTGGCCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGCAACTCATTCTGCAAGATGCTGTCTTCTTCAGCTGTGGCCAAT  750

seq1  CCCAGCTCTCTTGCAGCTTCTGAGACCTGGGAGAGGAAGGCAGTTACTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTCTCTTGCAGCTTCTGAGACCTGGGAGAGGAAGGCAGTTACTAA  800

seq1  GACACAGGAATGGTGGGGATGGGCATGGCCGCTCTCAGGCTGCATTCTCC  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GACACAGGAATGGTGGGGATGGGCATGGCCGCTCTCA-GCTGCATTCTCC  849

seq1  CACTTCCTCAACTTTACTTGACAGTCAACATTAATATTTTAACTGAAATT  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CACTTCCTCAACTTTACTTGACAGTCAACATTAATA-TTTAACTGAAATT  898

seq1  ACAGATTTGAAAACTGCAGACAGGCAAAGTATTCAAAAACAGTCACAAAA  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACAGATTTGAAAACTGCAGACAGGCAAAGTATTC-AAAACAGTCACAAAA  947

seq1  CAGGGACTGAAAAAGATCAACTCAGGCTTCTATCAGCTCCAAACAAGAAC  1000
      || ||||||| ||||||||||||| ||||||||||||||||||| |||||
seq2  CACGGACTGATAAAGATCAACTCA-GCTTCTATCAGCTCCAAAC-AGAAC  995

seq1  ATGGCAAAGGAAGAGACCTCAGTGGATTACAGGAAGAAAGGAGAAGGCCA  1050
      ||||||||| |  ||||||||||||| ||||||||||||| |||||| ||
seq2  ATGGCAAAGAAGAAGACCTCAGTGGA-TACAGGAAGAAAGAAGAAGG-CA  1043

seq1  CATGCCACCCAGATCAATGATAATGAGAAGTACTCATTTGACATTTGTAC  1100
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  CATGCCACCCAGATC-ATGATAATGAGAAGCACTCATTTGACATTTGTAC  1092

seq1  T  1101
      |
seq2  T  1093

seq1: chr5_26446496_26447621
seq2: B6Ng01-074O09.g_70_1194 (reverse)

seq1  TTCTGGTGGCATAGCTTCCTAGAACCCA-CACCTTTAAAA--GCATAAGA  47
      |||| ||||||||||||||| || |||| |||||||||||   |||||||
seq2  TTCT-GTGGCATAGCTTCCT-GATCCCACCACCTTTAAAAAGCCATAAGA  48

seq1  TGAGGGAGGCATTGCAGA-CCCCAGACTGACA-CCACAGGTTTTGGAGCA  95
      ||||||||||| |||||| ||||||||||||| |||||||||||||||| 
seq2  TGAGGGAGGCA-TGCAGACCCCCAGACTGACACCCACAGGTTTTGGAGC-  96

seq1  ATGTATACCTCTTGTTCATGGATCCCTCGGTCACGTAGATCAGGCGATCT  145
      |||||||| |||||||||||||| |||||||||||||||||| |||||||
seq2  ATGTATACATCTTGTTCATGGAT-CCTCGGTCACGTAGATCA-GCGATCT  144

seq1  CTCAGCTCATTTGTCTCCTCGGTAGTGAGCTGGATCTTTTTGATCAGCTC  195
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTCAGCTCATTTGTCTCCTCGGTAGTGAGCTGGATC-TTTTGATCAGCTC  193

seq1  CTTCTCTTCCTTCTCAAACTGCTTTTTGCTTTTGACAGGTACCGGGGATG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTCCTTCTCAAACTGCTTTTTGCTTTTGACAGGTACCGGGGATG  243

seq1  TTGTCTGTCTGTGAGCCACTGTAGGTAGATGAATACCAGAATATTAG-AT  294
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTGTCTGTCTGTGAGCCACTGTAGGTAGATGAATACCAGAATATTAGAAT  293

seq1  GTGAGAATGCAAAGAGTGTAGACTGACCACAGAGAAGGAAAAATGCCTGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAATGCAAAGAGTGTAGACTGACCACAGAGAAGGAAAAATGCCTGT  343

seq1  AACCTCGTGACACCACCAAGAGATTGGTGCCAGCATGAGATTTCTTCTCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCGTGACACCACCAAGAGATTGGTGCCAGCATGAGATTTCTTCTCA  393

seq1  GTGGATCTCAGTTCTACCATCACTCTAGAGAGATCAGGCGATGTAAGTAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATCTCAGTTCTACCATCACTCTAGAGAGATCAGGCGATGTAAGTAG  443

seq1  GCAGATGTTTCCTCATTCTCCTTAAACGTGCTTATGAGGACCAGAGAGAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGTTTCCTCATTCTCCTTAAACGTGCTTATGAGGACCAGAGAGAT  493

seq1  GTCTTCTCCAGGGTACAATTTGGCTTCAGAGCCCTGAGCCCTGTGGTTTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTCCAGGGTACAATTTGGCTTCAGAGCCCTGAGCCCTGTGGTTTC  543

seq1  ACAAGTCAGATGATAAATACACTATTCAAAAGTATTTGAGATCTTGGAGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTCAGATGATAAATACACTATTCAAAAGTATTTGAGATCTTGGAGA  593

seq1  TGCTCCAATATCCTACCTGTTACTCTACGCCAAGGAATTGGCTTAAAAAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCAATATCCTACCTGTTACTCTACGCCAAGGAATTGGCTTAAAAAG  643

seq1  TCATGCAGGGGGCAGAACATAGTCAACACATTGATCAATTTCCCAACCCG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCAGGGGGCAGAACATAGTCAACACATTGATCAATTTCCCAACCCG  693

seq1  CCCCTAAACACAAAACATCCCAGAAGTAGGAATAGAATCCCCCTGTGGGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAAACACAAAACATCCCAGAAGTAGGAATAGAATCCCCCTGTGGGT  743

seq1  CTATCAACTGATAGTTATTTGTTTACAGTGTAGAAATGCCTGCCCCCTAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAACTGATAGTTATTTGTTTACAGTGTAGAAATGCCTGCCCCCTAC  793

seq1  AATTGGTGATAAAGAAAGTTAAGGTAGGAACTGTCACAAACAGGAGGTCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTGATAAAGAAAGTTAAGGTAGGAACTGTCACAAACAGGAGGTCA  843

seq1  GAGTAGTTCTGAGAACATGAGGTCTTGGTCTGGAGCACCATTCTCTCCCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGTTCTGAGAACATGAGGTCTTGGTCTGGAGCACCATTCTCTCCCT  893

seq1  GTCACTAATGTCAGATAACTACAGGAGCTAAAAGAAGCCATGGACTGAAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTAATGTCAGATAACTACAGGAGCTAAAAGAAGCCATGGACTGAAG  943

seq1  TGTAGGATTTCCTTCCCTAAAACTGGCATAGCTTAGACCCGCTGTCACTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGATTTCCTTCCCTAAAACTGGCATAGCTTAGACCCGCTGTCACTC  993

seq1  CTGATGGTCTCATTCTGTCCCCATGTAACACCCACAATACCCAGTGCAAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGTCTCATTCTGTCCCCATGTAACACCCACAATACCCAGTGCAAA  1043

seq1  AAAAGACTTGAAGTTCATGGCATAACAGCTTTGACCTTGTCAATTCCTTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTTGAAGTTCATGGCATAACAGCTTTGACCTTGTCAATTCCTTC  1093

seq1  CTTAGGGGATGGAAAAGTACTGTTCTGAATTC  1126
      ||||||||||||||||||||||||||||||||
seq2  CTTAGGGGATGGAAAAGTACTGTTCTGAATTC  1125