BAC Information

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BAC

Clone NameB6Ng01-075I17
Chromosome5 (Build37)
Map Location 78,598,905 - 78,725,885
singlet/doubletdoublet
Overlap geneLOC100039398
Upstream geneSpink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
Downstream geneMthfr-ps1, EG384187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075I17.bB6Ng01-075I17.g
ACCDH892077DH892078
length833987
definitionDH892077|Mus musculus domesticus DNA, BAC clone: B6Ng01-075I17, 5' end.DH892078|Mus musculus domesticus DNA, BAC clone: B6Ng01-075I17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,598,905 - 78,599,735)(78,725,346 - 78,725,885)
sequence
gaattcagaacttcatggagataatctgccatacaggaattaagaatgag
tcacacgaagtgagtggaatcttttgcctagaaattaaatgagaaacttt
aatatggctggacaatgcagtattttccatattttcaattatgaaaatga
actcatctccatgatatttgtatttcagagttcaattctgggttgagcaa
gcagggagaagtttgcattatgctttattattgtgagttatgcttcttct
agaatagacttgtactagccacaggtagataataataaaactctaataat
gatgatttcaattttccaaagtagagattgagttcatataacctcataaa
gagatgtcctccaccagcattacatagagggagattaataagcacattta
tgggtacaagcatcatttcatgcatttgttatgctctcattgagactagt
gtcaaggtggaatccctgggagttgtcttaatgggtgatctaaacctata
cttcatatatttttactttatcccagatttgatctctctctctctctctc
tctctctctctctctctctctccccctctcccccctctctttctctgtgt
gtgtgttcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagt
gaaagggtctactgttattcactggtgtcttccttcaaattttaaaggac
aattttttaaatttttattagatatttaaaggacatttttaaaaattatg
ttaatgtacataaaaactcagctgtatcatttaacacagtttggaggaca
gtgtttcatctatgcccttttcaagttggtaat
gaattctcttgactagtgagacttcaggtgaaataggctgtctcccctag
gggtcttgtggagtgtgtgctctccatggtttggggcgactctggggtcc
ctagtgccaatgttgctggggttctaaccttcaggaaagaaatcagattt
gtgggctaacaaatgaggtgcagggccaggatatagtttaccactgctgg
gtgtgctttaaggggacatggctggtaaagactttgtgggggtgatctta
cctggttgtccctattgctgaagacaacaccgacaaaacttattgaaagt
tgaggagtcatactctttcccacctagagccttcacttctactgactagt
gttcatgtttttcgaaagtactctgcacactaccgaaggaaaaaggaaaa
tactaagcctactacaagctgcagtgttggcttgcttgaagataccggag
tacaatagtggagcaaaacttgcaagactaaccaagcaatatttgattag
atttaagatccattccataagatagatcccgtccctgctcaggtgacaaa
gaacttaggactagatatccaggtagctgggggacccatatcctaatatt
ctactaaaggaagccagcaataaaatgactcttagtgacattcttttcta
ctcagagttcagtggcttcctcactttcatcagagaaacttcctcctaca
atagatggaaagaaattcagagactcacatacagataatatgcagggaat
gaaagactgtagaacactcagtgctaattaggatgtctctacctaatctc
tctcttcagtgctcagcaaaccctgtatgagaggagaagaaatgatagaa
gtcagaggggatgaaggaaataaaaccaaaatacagaaggattattcaca
tatgaactcacagagactgaggcacataaacaggctgcacaggtctgggg
cagatgtgtcacagtgcgagagcagagtgagagagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_78598905_78599735
seq2: B6Ng01-075I17.b_43_875

seq1  GAATTCAGAACTTCATGGAGATAATCTGCCATACAGGAATTAAGAATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAACTTCATGGAGATAATCTGCCATACAGGAATTAAGAATGAG  50

seq1  TCACACGAAGTGAGTGGAATCTTTTGCCTAGAAATTAAATGAGAAACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACGAAGTGAGTGGAATCTTTTGCCTAGAAATTAAATGAGAAACTTT  100

seq1  AATATGGCTGGACAATGCAGTATTTTCCATATTTTCAATTATGAAAATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGCTGGACAATGCAGTATTTTCCATATTTTCAATTATGAAAATGA  150

seq1  ACTCATCTCCATGATATTTGTATTTCAGAGTTCAATTCTGGGTTGAGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATCTCCATGATATTTGTATTTCAGAGTTCAATTCTGGGTTGAGCAA  200

seq1  GCAGGGAGAAGTTTGCATTATGCTTTATTATTGTGAGTTATGCTTCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAGAAGTTTGCATTATGCTTTATTATTGTGAGTTATGCTTCTTCT  250

seq1  AGAATAGACTTGTACTAGCCACAGGTAGATAATAATAAAACTCTAATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGACTTGTACTAGCCACAGGTAGATAATAATAAAACTCTAATAAT  300

seq1  GATGATTTCAATTTTCCAAAGTAGAGATTGAGTTCATATAACCTCATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTTCAATTTTCCAAAGTAGAGATTGAGTTCATATAACCTCATAAA  350

seq1  GAGATGTCCTCCACCAGCATTACATAGAGGGAGATTAATAAGCACATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTCCTCCACCAGCATTACATAGAGGGAGATTAATAAGCACATTTA  400

seq1  TGGGTACAAGCATCATTTCATGCATTTGTTATGCTCTCATTGAGACTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTACAAGCATCATTTCATGCATTTGTTATGCTCTCATTGAGACTAGT  450

seq1  GTCAAGGTGGAATCCCTGGGAGTTGTCTTAATGGGTGATCTAAACCTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGTGGAATCCCTGGGAGTTGTCTTAATGGGTGATCTAAACCTATA  500

seq1  CTTCATATATTTTTACTTTATCCCAGATTTGATCTCTCTCTCTCTCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATATATTTTTACTTTATCCCAGATTTGATCTCTCTCTCTCTCTCTC  550

seq1  TCTCTCTCTCTCTCTCTCTCTCCCCCTCTCCCCCCTCTCTTTCTCTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCCCCCTCTCCCCCCTCTCTTTCTCTGTGT  600

seq1  GTGTGTTCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTAGT  650
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTGTGTTCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGT  650

seq1  G-AAGGGTCTACTGTTATTCACTGGTGTCTTCC-TCAAATTTTAAAGGAC  698
      | ||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAAAGGGTCTACTGTTATTCACTGGTGTCTTCCTTCAAATTTTAAAGGAC  700

seq1  AA-TTTTTAAAATTTTATTAGATATTTTAAAGGACATTTTT-AAAATTAT  746
      || |||||||| |||||||||||| |||||||||||||||| ||||||||
seq2  AATTTTTTAAATTTTTATTAGATA-TTTAAAGGACATTTTTAAAAATTAT  749

seq1  GTTTATGTACAT-AAAACTCAGCTGTATTCATTTAACACAGTTTGGAGGA  795
      ||| |||||||| |||||||||||||| ||||||||||||||||||||||
seq2  GTTAATGTACATAAAAACTCAGCTGTA-TCATTTAACACAGTTTGGAGGA  798

seq1  CAGTTGTTTCACCTTTGCCCTTTTCAAGTTGGTAAT  831
      ||| ||||||| || |||||||||||||||||||||
seq2  CAG-TGTTTCATCTATGCCCTTTTCAAGTTGGTAAT  833

seq1: chr5_78725346_78725885
seq2: B6Ng01-075I17.g_67_606 (reverse)

seq1  GAGCAGGGACGGGATCTATCTTATGGAATGGATCTTAAATCTAATCAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGGACGGGATCTATCTTATGGAATGGATCTTAAATCTAATCAAAT  50

seq1  ATTGCTTGGTTAGTCTTGCAAGTTTTGCTCCACTATTGTACTCCGGTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTGGTTAGTCTTGCAAGTTTTGCTCCACTATTGTACTCCGGTATC  100

seq1  TTCAAGCAAGCCAACACTGCAGCTTGTAGTAGGCTTAGTATTTTCCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCAAGCCAACACTGCAGCTTGTAGTAGGCTTAGTATTTTCCTTTT  150

seq1  TCCTTCGGTAGTGTGCAGAGTACTTTCGAAAAACATGAACACTAGTCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCGGTAGTGTGCAGAGTACTTTCGAAAAACATGAACACTAGTCAGT  200

seq1  AGAAGTGAAGGCTCTAGGTGGGAAAGAGTATGACTCCTCAACTTTCAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGAAGGCTCTAGGTGGGAAAGAGTATGACTCCTCAACTTTCAATA  250

seq1  AGTTTTGTCGGTGTTGTCTTCAGCAATAGGGACAACCAGGTAAGATCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGTCGGTGTTGTCTTCAGCAATAGGGACAACCAGGTAAGATCACC  300

seq1  CCCACAAAGTCTTTACCAGCCATGTCCCCTTAAAGCACACCCAGCAGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAAGTCTTTACCAGCCATGTCCCCTTAAAGCACACCCAGCAGTGG  350

seq1  TAAACTATATCCTGGCCCTGCACCTCATTTGTTAGCCCACAAATCTGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTATATCCTGGCCCTGCACCTCATTTGTTAGCCCACAAATCTGATT  400

seq1  TCTTTCCTGAAGGTTAGAACCCCAGCAACATTGGCACTAGGGACCCCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTGAAGGTTAGAACCCCAGCAACATTGGCACTAGGGACCCCAGA  450

seq1  GTCGCCCCAAACCATGGAGAGCACACACTCCACAAGACCCCTAGGGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCCCCAAACCATGGAGAGCACACACTCCACAAGACCCCTAGGGGAGA  500

seq1  CAGCCTATTTCACCTGAAGTCTCACTAGTCAAGAGAATTC  540
      ||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTATTTCACCTGAAGTCTCACTAGTCAAGAGAATTC  540