BAC Information

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BAC

Clone NameB6Ng01-075O18
Chromosome5 (Build37)
Map Location 77,006,822 - 77,132,767
singlet/doubletdoublet
Overlap geneCep135, LOC100039117, A730089K16Rik
Upstream geneKit, EG664874, Kdr, Gabarapl2-ps5_758.1, Srd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1, EG665055, Pdcl2, Pafah1b1-ps3, Nmu, LOC665065, EG639545, Exoc1
Downstream geneLOC665107, LOC100039299, C530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075O18.bB6Ng01-075O18.g
ACCDH892343DH892344
length1,149962
definitionDH892343|Mus musculus domesticus DNA, BAC clone: B6Ng01-075O18, 5' end.DH892344|Mus musculus domesticus DNA, BAC clone: B6Ng01-075O18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,131,595 - 77,132,767)(77,006,822 - 77,007,783)
sequence
gaattcaacctcaccgggtcttgtttatttgtacgaaatacagaaataac
ctcatgctcttaattatcaagttacttgaaaaatcagtaatatacgaaaa
aaaatgtggcaatttgttatcatccatcttaaaaaaacatttgtttctta
gctattgttaagtaaattgtttcctttgataacggattgagaactacgct
gaagaattgggtctcttaaatattttaagaaccacagttatagccatttt
aacgaaggaaagagagctcctttttcctctaccctaggaagtctggaacc
gtgagagtcacaggacattgaaaactaaaggtaaagcgacagggtgcggc
tgtgggtcagtggtagctcacccagcaccttggagattctgggttccatc
ccagaggtgaaaatataaacattttaaaagtatgacgacttcttggactc
tgtttggactacatcagaggttctgttatgctttaatgtaacaaaatgat
taatcgcagagaggaaacacatgggtctcctgtgtcaaagccgtcatttg
ctgggggaggaggcaaaatggaatctactcattaaggcttcccgcttagt
tatgctttggatttgaacacctcccttccaccaaaggccacctgctggag
gatttcccttccattacagggggaagcagagcctttaggagacagagtca
ccgttagggctattcccttggggaaaacatgtgcaggtctcccctcttct
cccccctcctccctccctgttgctttttgggtgccatgcctcctgccttg
attgatgtaaagccttgataacggatacccgaatacccggatacccatct
gggatcaccggaggaagtaactaagccccgccccgcccgaagtaactaag
ccccgccccgcctcgcccccaactgcgtgacccaataagcctctcctctc
tcaaagtggtctctgttttgtttgttttttttttttgtttttggtttttt
gcacaactacacacagctgtgggcatcctctagtatatgacataggaaga
gcaacagctgccacctgcatgattcagcagattctgcgagcggcatgtcc
cgctgcctggatcaggtaacctcacacaagctgtcgaccagccttgtag
gaattctccctttatggattcagaatgtggtggaatcactgagatgagat
gggaaccttccataacagagctttgccgggggaagttggttgctgggctg
tgttcttgaaggctctagcttgtcctgggctccttgtatggtttttggat
gccatatgtgaggatccttttctgtcacatgtgcccactgccattacagt
ttgagactgctgcaatctcaagtcaaaaatggatctctgctcccctgaaa
tggttcctctcaagtatctgacacagtgatgaaaagtgacagacatgtat
gcccatccttttcaggggttgagtatatttccatacttttgcctatatta
aatttatttttctactgaattctaatgtcaatcattttactatcaatttg
caaaagggaggtatttttaggtctatggtgttagttgtaaatatttttct
ggcttgttgtcatttggcatggaatgtgtgacatggagaaggcctgctat
ttggttggtttttaaattcagtaataattattgagtttttcactccttca
gagctccacacttacctctatttcttctcaatccaaacagtgaagaaaga
ctgagtcattgcactggtgttgaaatgaaaatgccccatgactttgtaga
cgaaaaatgaatttgctatgtcacagagatgctgtaggcctgttttttta
tttgttttgtttttgttgttgtttttttttttcgagacagggtttctctg
tgtagccctggctgtcctggaactcactttgtagaccaggctggcctcga
actcagaaatccacctgcctctgcctcctgagtgttgggattaaggcgtg
cgccaccatgccctgctaggcttgcgtgatgtttttaagggtgatggttt
cctcagataatttcccagtggccttcttactagagaatagcttctcctaa
cgcttacttatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_77131595_77132767
seq2: B6Ng01-075O18.b_46_1194 (reverse)

seq1  CTACAAAGGCTGCGTCCGACCAGC-TGTGTGAGTGTTCCCTGGGTCCAGC  49
      |||| ||||||| || ||| |||| |||||||| ||| ||| | ||||| 
seq2  CTAC-AAGGCTG-GT-CGA-CAGCTTGTGTGAG-GTTACCT-GATCCAGG  44

seq1  CAGCGGGCCATGCCCGCTCCGCAGAATCTGCTTGAATCATGGCAGGGTTG  99
      ||||||| |||| ||||| |||||||||||| |||||||| |||||  ||
seq2  CAGCGGGACATG-CCGCT-CGCAGAATCTGC-TGAATCAT-GCAGG--TG  88

seq1  GCAGCCTGTTGCTCTTCCTATTGTCATTATAACTTAGAGGATGCCCACCA  149
      |||| ||||||||||||||| ||||| ||||   ||||||||||||| ||
seq2  GCAG-CTGTTGCTCTTCCTA-TGTCA-TATA--CTAGAGGATGCCCA-CA  132

seq1  GCTGTGTGTAGTTGTGACAAAAAAACAAAAAAACAAAAAAAAAAAACAAA  199
      |||||||||||||||| ||||||| |  ||||||||||||||||||||| 
seq2  GCTGTGTGTAGTTGTG-CAAAAAACC--AAAAACAAAAAAAAAAAACAA-  178

seq1  ACAAAAAACAGAGACCACTTTGAGAGAGGAGAGGCTTATTTGGGTCACGC  249
        | |||||||||||||||||||||||||||||||||| |||||||||||
seq2  --ACAAAACAGAGACCACTTTGAGAGAGGAGAGGCTTA-TTGGGTCACGC  225

seq1  AGTTGGGGGCGAGGCGGGGCGGGGCTTAGTTACTTCGGGCGGGGCGGGGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGGGCGAGGCGGGGCGGGGCTTAGTTACTTCGGGCGGGGCGGGGC  275

seq1  TTAGTTACTTCCTCCGGTGATCCCAGATGGGTATCCGGGTATTCGGGTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTACTTCCTCCGGTGATCCCAGATGGGTATCCGGGTATTCGGGTAT  325

seq1  CCGTTATCAAGGCTTTACATCAATCAAGGCAGGAGGCATGGCACCCAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTATCAAGGCTTTACATCAATCAAGGCAGGAGGCATGGCACCCAAAA  375

seq1  AGCAACAGGGAGGGAGGAGGGGGGAGAAGAGGGGAGACCTGCACATGTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAGGGAGGGAGGAGGGGGGAGAAGAGGGGAGACCTGCACATGTTT  425

seq1  TCCCCAAGGGAATAGCCCTAACGGTGACTCTGTCTCCTAAAGGCTCTGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAGGGAATAGCCCTAACGGTGACTCTGTCTCCTAAAGGCTCTGCT  475

seq1  TCCCCCTGTAATGGAAGGGAAATCCTCCAGCAGGTGGCCTTTGGTGGAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTGTAATGGAAGGGAAATCCTCCAGCAGGTGGCCTTTGGTGGAAG  525

seq1  GGAGGTGTTCAAATCCAAAGCATAACTAAGCGGGAAGCCTTAATGAGTAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGTTCAAATCCAAAGCATAACTAAGCGGGAAGCCTTAATGAGTAG  575

seq1  ATTCCATTTTGCCTCCTCCCCCAGCAAATGACGGCTTTGACACAGGAGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATTTTGCCTCCTCCCCCAGCAAATGACGGCTTTGACACAGGAGAC  625

seq1  CCATGTGTTTCCTCTCTGCGATTAATCATTTTGTTACATTAAAGCATAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGTTTCCTCTCTGCGATTAATCATTTTGTTACATTAAAGCATAAC  675

seq1  AGAACCTCTGATGTAGTCCAAACAGAGTCCAAGAAGTCGTCATACTTTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTCTGATGTAGTCCAAACAGAGTCCAAGAAGTCGTCATACTTTTA  725

seq1  AAATGTTTATATTTTCACCTCTGGGATGGAACCCAGAATCTCCAAGGTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTATATTTTCACCTCTGGGATGGAACCCAGAATCTCCAAGGTGC  775

seq1  TGGGTGAGCTACCACTGACCCACAGCCGCACCCTGTCGCTTTACCTTTAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGAGCTACCACTGACCCACAGCCGCACCCTGTCGCTTTACCTTTAG  825

seq1  TTTTCAATGTCCTGTGACTCTCACGGTTCCAGACTTCCTAGGGTAGAGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATGTCCTGTGACTCTCACGGTTCCAGACTTCCTAGGGTAGAGGA  875

seq1  AAAAGGAGCTCTCTTTCCTTCGTTAAAATGGCTATAACTGTGGTTCTTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAGCTCTCTTTCCTTCGTTAAAATGGCTATAACTGTGGTTCTTAA  925

seq1  AATATTTAAGAGACCCAATTCTTCAGCGTAGTTCTCAATCCGTTATCAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTAAGAGACCCAATTCTTCAGCGTAGTTCTCAATCCGTTATCAAA  975

seq1  GGAAACAATTTACTTAACAATAGCTAAGAAACAAATGTTTTTTTAAGATG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAATTTACTTAACAATAGCTAAGAAACAAATGTTTTTTTAAGATG  1025

seq1  GATGATAACAAATTGCCACATTTTTTTTCGTATATTACTGATTTTTCAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATAACAAATTGCCACATTTTTTTTCGTATATTACTGATTTTTCAAG  1075

seq1  TAACTTGATAATTAAGAGCATGAGGTTATTTCTGTATTTCGTACAAATAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGATAATTAAGAGCATGAGGTTATTTCTGTATTTCGTACAAATAA  1125

seq1  ACAAGACCCGGTGAGGTTGAATTC  1173
      ||||||||||||||||||||||||
seq2  ACAAGACCCGGTGAGGTTGAATTC  1149

seq1: chr5_77006822_77007783
seq2: B6Ng01-075O18.g_68_1029

seq1  GAATTCTCCCTTTATGGATTCAGAATGTGGTGGAATCACTGAGATGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTTTATGGATTCAGAATGTGGTGGAATCACTGAGATGAGAT  50

seq1  GGGAACCTTCCATAACAGAGCTTTGCCGGGGGAAGTTGGTTGCTGGGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCTTCCATAACAGAGCTTTGCCGGGGGAAGTTGGTTGCTGGGCTG  100

seq1  TGTTCTTGAAGGCTCTAGCTTGTCCTGGGCTCCTTGTATGGTTTTTGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTGAAGGCTCTAGCTTGTCCTGGGCTCCTTGTATGGTTTTTGGAT  150

seq1  GCCATATGTGAGGATCCTTTTCTGTCACATGTGCCCACTGCCATTACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATATGTGAGGATCCTTTTCTGTCACATGTGCCCACTGCCATTACAGT  200

seq1  TTGAGACTGCTGCAATCTCAAGTCAAAAATGGATCTCTGCTCCCCTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACTGCTGCAATCTCAAGTCAAAAATGGATCTCTGCTCCCCTGAAA  250

seq1  TGGTTCCTCTCAAGTATCTGACACAGTGATGAAAAGTGACAGACATGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCTCTCAAGTATCTGACACAGTGATGAAAAGTGACAGACATGTAT  300

seq1  GCCCATCCTTTTCAGGGGTTGAGTATATTTCCATACTTTTGCCTATATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATCCTTTTCAGGGGTTGAGTATATTTCCATACTTTTGCCTATATTA  350

seq1  AATTTATTTTTCTACTGAATTCTAATGTCAATCATTTTACTATCAATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATTTTTCTACTGAATTCTAATGTCAATCATTTTACTATCAATTTG  400

seq1  CAAAAGGGAGGTATTTTTAGGTCTATGGTGTTAGTTGTAAATATTTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGGAGGTATTTTTAGGTCTATGGTGTTAGTTGTAAATATTTTTCT  450

seq1  GGCTTGTTGTCATTTGGCATGGAATGTGTGACATGGAGAAGGCCTGCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTTGTCATTTGGCATGGAATGTGTGACATGGAGAAGGCCTGCTAT  500

seq1  TTGGTTGGTTTTTAAATTCAGTAATAATTATTGAGTTTTTCACTCCTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGGTTTTTAAATTCAGTAATAATTATTGAGTTTTTCACTCCTTCA  550

seq1  GAGCTCCACACTTACCTCTATTTCTTCTCAATCCAAACAGTGAAGAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCACACTTACCTCTATTTCTTCTCAATCCAAACAGTGAAGAAAGA  600

seq1  CTGAGTCATTGCACTGGTGTTGAAATGAAAATGCCCCATGACTTTGTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCATTGCACTGGTGTTGAAATGAAAATGCCCCATGACTTTGTAGA  650

seq1  CGAAAAATGAATTTGCTATGTCACAGAGATGCTGTAGGCCTGTTTTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAAATGAATTTGCTATGTCACAGAGATGCTGTAGGCCTGTTTTTTTA  700

seq1  TTTGTTTTGTTTTTGTTGTTGTTTTTTTTTTTCGAGACAGGGTTTCTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTTTTGTTGTTGTTTTTTTTTTTCGAGACAGGGTTTCTCTG  750

seq1  TGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGA  800

seq1  ACTCAGAAATCCACCTGCCTCTGCCTCCTGAGTGTTGGGATTAAAGGCGT  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACTCAGAAATCCACCTGCCTCTGCCTCCTGAGTGTTGGGATT-AAGGCGT  849

seq1  GCGCCACCATGCCCTGCTAGGCCTGCGTGATGTTTTTAAGGGTGATGGTT  900
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCGCCACCATGCCCTGCTAGGCTTGCGTGATGTTTTTAAGGGTGATGGTT  899

seq1  TCCTCAGAGTAATTTCCCAGT-GTCTTC-TACTAGAGAATAGCTTCTCCT  948
      |||||||| |||||||||||| | |||| |||||||||||||||||||||
seq2  TCCTCAGA-TAATTTCCCAGTGGCCTTCTTACTAGAGAATAGCTTCTCCT  948

seq1  AACGCCTACTTATC  962
      ||||| ||||||||
seq2  AACGCTTACTTATC  962