BAC Information

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BAC

Clone NameB6Ng01-075P01
Chromosome5 (Build37)
Map Location 55,939,920 - 56,088,903
singlet/doubletdoublet
Overlap geneEG666405
Upstream geneEG666377, LOC666380
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075P01.bB6Ng01-075P01.g
ACCDH892357DH892358
length1,0811,182
definitionDH892357|Mus musculus domesticus DNA, BAC clone: B6Ng01-075P01, 5' end.DH892358|Mus musculus domesticus DNA, BAC clone: B6Ng01-075P01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,939,920 - 55,940,986)(56,087,704 - 56,088,903)
sequence
gaattctgcactttaaatgagacaatagtgtaactcagaaactaaatata
ttgaagttatttaatatctcaagacaaatttccatctgaactgcctttaa
agccctgcatttcatttaaaaattatgcaattggttgaaaagaaaagtta
agaaattgcttactaaagcatacttatagatattccacattccctcatgt
gttgggctttttctctctttgtttaaaagcaactctaagacccacagaag
atgcattttgcccctaggaaattttattttatttttaataattggaaaac
acttttctcggatgtgaagtaaagatttctttcataaaagcatattttgc
ctgaagagtgtttttaactgtgatgaaaacaacagttgccagcccattag
ttctcttcttgcaaattattcatttacaaagttattagcttaataaaaag
caatagatagaaggccttaagcgattcttctctaaatctgggggatttgc
ttcattaaaaatcaattgcaaagtcaaagctcactccatgtgtatgtgag
gaagcaagaaaaagagaagtacagatgtaataatcttgcctggagttttc
tttatctattattgaagatgaaaatcttcatgaatgacattttacaatat
ttcttctctaggatatttctctttcattctggtagaaaatttaatgttac
ttatggactctattatcaaaaaatttcagaactaaatacttccatgtcac
atattcaggttataatgttaactttctgataatttccttgtaaagttaag
ccttacatttcctcttgttatttctgtgattcacttacaaatttagcaac
cagtagcttaataaattataatatcttctcaagaatgtgtaagacataaa
tggaaaaatcatatatgatgcttttgttttatttaattcttataaataat
cattggactagaaatggaaaaccaagggacacctcatataagcattttct
tttccccttatcctaaagctagaggagaaattattgaattaatagtaata
gaatgtctattgagaaaccttccttaaaaga
gaattcctccatatgctggcaagccaggaaacctagaaaggccattctcc
tttctgtgttaaagaccttttactcagagggctcctgatctacttttaga
ggaggcagttctacactgagcaataggaaggatttgctctgtttttgacc
tctgtctatggtcattaggatactgctcatctattcatatcagtacatag
ctgtcatcaacaaacagaaacaaaggagcacagaattcctggggtcttta
tgtctttgtttatgaaggcttccatatcatataaatattttttttctcat
gttatcctttcatttcaaagagctatgaccacatgatgggtgaagagcca
tattaaaacttcatgactctcaactttattctatgtgaaaaaaataagaa
aatcttctaaaacaaagaatgataattcagaaatttgtggctatgtataa
gtatgtactgaacagctctaactaacaaaacaccaaaaaagtctttagtt
ccttctttttgtactttttctttctttttgtggggttaccagactggaat
taattgttttattttaataatggtaagaaaaatttagaagagcaaaattt
taacttaaatatatgctattatatagtatattttattcaatatattaaac
atcttgaaactggtattactaattaggtcttggttggtttaaatatattt
aaatatatcagcaaatatagaagccataacaatcagtttatgttcattta
gataaacaagagttatttcataaatatataactccatgtacaaagcaaaa
aatttggcctaatatgatataatttccattttatgaataagataaaataa
aattttctgtgtattctgagaccagtgtctagactatactttcataaata
aaattaaactataattaggttgtattatgtaactaatagtcattattcat
aatgtaaaatgtaattcactgttcagagtatatatttgatctattttata
atttgatacatattatactgatatgctgtaaataatgcatatacatgtta
ctctatgtctcatgtatctttattgataagatactttttatgtggtaaag
aaggtttcttgacaaatataggcttttggaattccaacataaacaaattg
gaaatgttattcaaaggtagattctctcctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_55939920_55940986
seq2: B6Ng01-075P01.b_47_1127

seq1  GAATTCTGCACTTTAAATGAGACAATAGTGTTTCTCAGAAACTAAATATA  50
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  GAATTCTGCACTTTAAATGAGACAATAGTGTAACTCAGAAACTAAATATA  50

seq1  TTGAAGTTATTTAATATCTCAAGACAAATTTCCATCTGAACTGCCTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTTATTTAATATCTCAAGACAAATTTCCATCTGAACTGCCTTTAA  100

seq1  AGCCCTGCATTTCATTTAAAAATTATGCAATTGGTTGAAAAGAAAAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGCATTTCATTTAAAAATTATGCAATTGGTTGAAAAGAAAAGTTA  150

seq1  AGAAATTGCTTACTAAAGCATACTTATAGATATTCCACATTCCCTCATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTGCTTACTAAAGCATACTTATAGATATTCCACATTCCCTCATGT  200

seq1  GTTGGGCTTTTTCTCTCTTTGTTTAAAAGCAACTCTAAGACCCACAGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGCTTTTTCTCTCTTTGTTTAAAAGCAACTCTAAGACCCACAGAAG  250

seq1  ATGCATTTTGCCCCTAGGAAATTTTATTTTATTTTTAATAATTGGAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTTGCCCCTAGGAAATTTTATTTTATTTTTAATAATTGGAAAAC  300

seq1  ACTTTTCTCGGATGTGAAGTAAAGATTTCTTTCATAAAAGCATATTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTCGGATGTGAAGTAAAGATTTCTTTCATAAAAGCATATTTTGC  350

seq1  CTGAAGAGTGTTTTTAACTGTGATGAAAACAACAGTTGCCAGCCCATTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAGTGTTTTTAACTGTGATGAAAACAACAGTTGCCAGCCCATTAG  400

seq1  TTCTCTTCTTGCAAATTATTCATTTACAAAGTTATTAGCTTAATAAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCTTGCAAATTATTCATTTACAAAGTTATTAGCTTAATAAAAAG  450

seq1  CAATAGATAGAAGGCCTTAAGCGATTCTTCTCTAAATCTGGGGGATTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGATAGAAGGCCTTAAGCGATTCTTCTCTAAATCTGGGGGATTTGC  500

seq1  TTCATTAAAAATCAATTGCAAAGTCAAAGCTCACTCCATGTGTATGTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAAAAATCAATTGCAAAGTCAAAGCTCACTCCATGTGTATGTGAG  550

seq1  GAAGCAAGAAAAAGAGAAGTACAGATGTAATAATCTTGCCTGGAGTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAGAAAAAGAGAAGTACAGATGTAATAATCTTGCCTGGAGTTTTC  600

seq1  TTTATCTATTATTGAAGATGAAAATCTTCATGAATGACATTTTACAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTATTATTGAAGATGAAAATCTTCATGAATGACATTTTACAATAT  650

seq1  TTCTTCTCTAGGATATTTCTCTTTCATTCTGGTAGAAAATTTAATGTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCTAGGATATTTCTCTTTCATTCTGGTAGAAAATTTAATGTTAC  700

seq1  TTATGGACTCTATTATCAAAAAATTTCAGAACTAAATACTTCCATGTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGACTCTATTATCAAAAAATTTCAGAACTAAATACTTCCATGTCAC  750

seq1  ATATTCAGGTTATAATGTTAACTTTCTGATAATTTCCTTGT-AAGTTAAG  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATATTCAGGTTATAATGTTAACTTTCTGATAATTTCCTTGTAAAGTTAAG  800

seq1  CCTTACATTTCCTCTTGTTATTTCTGTGATTCACTTACAAATTTAGCAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACATTTCCTCTTGTTATTTCTGTGATTCACTTACAAATTTAGCAAC  850

seq1  CAGTAGCTTAATAAATTATAATATCTTCTCAAGAATGTGTAAGACATAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGCTTAATAAATTATAATATCTTCTCAAGAATGTGTAAGACATAAA  900

seq1  TGGAAAAATCATATATGATGCTTT--GTTTATTTAATTCTTATAAATAAT  947
      ||||||||||||||||||||||||   |||||||||||||||||||||||
seq2  TGGAAAAATCATATATGATGCTTTTGTTTTATTTAATTCTTATAAATAAT  950

seq1  CATT-GACTAGAAAT-GAAAACCAA-GGACACCTCATATAAGCATTTCCT  994
      |||| |||||||||| ||||||||| ||||||||||||||||||||| ||
seq2  CATTGGACTAGAAATGGAAAACCAAGGGACACCTCATATAAGCATTTTCT  1000

seq1  TT--CCCCTATCCTAAAGCTAGA-GAGAAATTATTGAATTTAATAGT-AT  1040
      ||  ||| ||||||||||||||| |||||||||||||| |||||||| ||
seq2  TTTCCCCTTATCCTAAAGCTAGAGGAGAAATTATTGAA-TTAATAGTAAT  1049

seq1  AGA--GTCTA-TGAGACA-CTTCC-TAAAAGA  1067
      |||  ||||| ||||| | ||||| |||||||
seq2  AGAATGTCTATTGAGAAACCTTCCTTAAAAGA  1081

seq1: chr5_56087704_56088903
seq2: B6Ng01-075P01.g_67_1248 (reverse)

seq1  AGAGAGAGAGAATCTAACTTTG-ATAACAATTCTCATTTTGTTTATGTT-  48
      |||| ||||||||||| ||||| |||||| ||| || |||||||||||| 
seq2  AGAG-GAGAGAATCTACCTTTGAATAACATTTC-CAATTTGTTTATGTTG  48

seq1  GAATTCTCATAAAACCTATATTTGTCAAGAAACTTTCTATACCAACAATA  98
      |||||| || ||| ||||||||||||||||||| |||| |||||   |||
seq2  GAATTC-CA-AAAGCCTATATTTGTCAAGAAACCTTCTTTACCA--CATA  94

seq1  AAAAGTATCTATACAATAAAGAATTACATGAGACATAAGAAGTTAAACAT  148
      ||||||||||   |||||||||  |||||||||||||   |||  |||||
seq2  AAAAGTATCTTATCAATAAAGA--TACATGAGACATA--GAGT--AACAT  138

seq1  GTATATGCATTATTTTACAAGCATATCAGTATAAATAATGTATCAAATTA  198
      |||||||||||| ||||| |||||||||||||||   |||||||||||| 
seq2  GTATATGCATTA-TTTAC-AGCATATCAGTATAA--TATGTATCAAATT-  183

seq1  ATAAAATAGATCAAATATTATACTCTGAACAGTGAATTACATTTTTACAT  248
      ||||||||||||||||| ||||||||||||||||||||||| ||||||| 
seq2  ATAAAATAGATCAAATA-TATACTCTGAACAGTGAATTACA-TTTTACA-  230

seq1  TTATGAATAATGACTATTAGTTACATAATACAACCTAATTATAGTTTAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAATAATGACTATTAGTTACATAATACAACCTAATTATAGTTTAAT  280

seq1  TTTATTTATGAAAGTATAGTCTAGACACTGGTCTCAGAATACACAGAAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATGAAAGTATAGTCTAGACACTGGTCTCAGAATACACAGAAAA  330

seq1  TTTTATTTTATCTTATTCATAAAATGGAAATTATATCATATTAGGCCAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTATCTTATTCATAAAATGGAAATTATATCATATTAGGCCAAA  380

seq1  TTTTTTGCTTTGTACATGGAGTTATATATTTATGAAATAACTCTTGTTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGCTTTGTACATGGAGTTATATATTTATGAAATAACTCTTGTTTA  430

seq1  TCTAAATGAACATAAACTGATTGTTATGGCTTCTATATTTGCTGATATAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATGAACATAAACTGATTGTTATGGCTTCTATATTTGCTGATATAT  480

seq1  TTAAATATATTTAAACCAACCAAGACCTAATTAGTAATACCAGTTTCAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATATTTAAACCAACCAAGACCTAATTAGTAATACCAGTTTCAAG  530

seq1  ATGTTTAATATATTGAATAAAATATACTATATAATAGCATATATTTAAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAATATATTGAATAAAATATACTATATAATAGCATATATTTAAGT  580

seq1  TAAAATTTTGCTCTTCTAAATTTTTCTTACCATTATTAAAATAAAACAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTTGCTCTTCTAAATTTTTCTTACCATTATTAAAATAAAACAAT  630

seq1  TAATTCCAGTCTGGTAACCCCACAAAAAGAAAGAAAAAGTACAAAAAGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCAGTCTGGTAACCCCACAAAAAGAAAGAAAAAGTACAAAAAGAA  680

seq1  GGAACTAAAGACTTTTTTGGTGTTTTGTTAGTTAGAGCTGTTCAGTACAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTAAAGACTTTTTTGGTGTTTTGTTAGTTAGAGCTGTTCAGTACAT  730

seq1  ACTTATACATAGCCACAAATTTCTGAATTATCATTCTTTGTTTTAGAAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATACATAGCCACAAATTTCTGAATTATCATTCTTTGTTTTAGAAGA  780

seq1  TTTTCTTATTTTTTTCACATAGAATAAAGTTGAGAGTCATGAAGTTTTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTATTTTTTTCACATAGAATAAAGTTGAGAGTCATGAAGTTTTAA  830

seq1  TATGGCTCTTCACCCATCATGTGGTCATAGCTCTTTGAAATGAAAGGATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTCTTCACCCATCATGTGGTCATAGCTCTTTGAAATGAAAGGATA  880

seq1  ACATGAGAAAAAAAATATTTATATGATATGGAAGCCTTCATAAACAAAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGAAAAAAAATATTTATATGATATGGAAGCCTTCATAAACAAAGA  930

seq1  CATAAAGACCCCAGGAATTCTGTGCTCCTTTGTTTCTGTTTGTTGATGAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGACCCCAGGAATTCTGTGCTCCTTTGTTTCTGTTTGTTGATGAC  980

seq1  AGCTATGTACTGATATGAATAGATGAGCAGTATCCTAATGACCATAGACA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGTACTGATATGAATAGATGAGCAGTATCCTAATGACCATAGACA  1030

seq1  GAGGTCAAAAACAGAGCAAATCCTTCCTATTGCTCAGTGTAGAACTGCCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCAAAAACAGAGCAAATCCTTCCTATTGCTCAGTGTAGAACTGCCT  1080

seq1  CCTCTAAAAGTAGATCAGGAGCCCTCTGAGTAAAAGGTCTTTAACACAGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAAAAGTAGATCAGGAGCCCTCTGAGTAAAAGGTCTTTAACACAGA  1130

seq1  AAGGAGAATGGCCTTTCTAGGTTTCCTGGCTTGCCAGCATATGGAGGAAT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAATGGCCTTTCTAGGTTTCCTGGCTTGCCAGCATATGGAGGAAT  1180

seq1  TC  1200
      ||
seq2  TC  1182