BAC Information

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BAC

Clone NameB6Ng01-076D04
Chromosome5 (Build37)
Map Location 45,254,888 - 45,363,071
singlet/doubletdoublet
Overlap genenone
Upstream geneCd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1, LOC100040717, LOC545747, Ldb2, LOC100041481
Downstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076D04.bB6Ng01-076D04.g
ACCDH892536DH892537
length661807
definitionDH892536|Mus musculus domesticus DNA, BAC clone: B6Ng01-076D04, 5' end.DH892537|Mus musculus domesticus DNA, BAC clone: B6Ng01-076D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,254,888 - 45,255,548)(45,362,267 - 45,363,071)
sequence
gaattcataaatgcaagggccacgtcatgtccagaaaacagcattttaca
gctcattctcatctgctctgaccttttctctctcctcttcagaaacattc
cctgagcggatagaatagtgggtagtagccctgcctgtttaaccttcttc
attgtctcttcccccacttctttcttctttcccatctctccttctctccc
tccatttctccatccctctccctctttttcttctccactttccttttttc
tttaaggctgtaaccgaggctcttaaacgtgcctggataaaataggaccc
aggaattcaaaccccttccagcacacagagatgttgatctcagactgcta
acatatttcaaactcccctgaagttctctggtgtctgaatcccgcaggca
gattattctaattgcctctctcctactctctggatggctgggtcacctcc
acccactgcttctcctcctgcttgcagcaagctctggccttttaaaattg
ctgcttctaatgtgctaccaaaatagggaatcagaaaactaagcttgtaa
caatagcttctgaaagaagagctaagcttcctaagtggttttcttgtgtg
tagctcttggggacatgtgcatttatttatttgtgtgtatgtgtgtgtgt
gtgtgtgtgtg
gaattctacattgacactcaaggaatcccacctctgtataaccttctccc
tgttagcacagttggaatctgtcttgcttcaaaccaatagggcaaacagg
acaaagctgatagagtttactcctgaacattatgtcttgagacatgaaag
gtcactgttatcctatggactttgagctgacacactgtaagagggaagac
aggagggaactacctgcagggaactcactgtatcatcctgattgtcgcat
cttccaagggccatctgaaagaacccagaagcaatatgggtttcccagcc
agacactacaagtatttcatgctagttccttaccaagagagccccaggag
atccaagtctgaggaacccactaagctacagcattcctttcctcaagata
agggccccaaagacactgtttactcactattgctctttgccaatcagttc
atttcttgggatcacactgggccttgcccttgtagctgaatccatggaag
catttaacagaaaaagaaatccttggatcagagtggttgatggtgctgcc
acaggaacaggatcaatcaacagggtcctggtccagcctgctttgccaat
tccctaaggctagccatggtgttggggatggtggttggtggcagtgctca
ctttgttagatcagtgttttatagccatgcaactgaattataaaatactg
ttatttcttagttcaattagagttggtgataggtcttgattcagtgttga
gaggggcgtgggaggaggataggaaatgatgctcaaggcatttttgttgg
tggaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_45254888_45255548
seq2: B6Ng01-076D04.b_47_707

seq1  GAATTCATAAATGCAAGGGCCACGTCATGTCCAGAAAACAGCATTTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAATGCAAGGGCCACGTCATGTCCAGAAAACAGCATTTTACA  50

seq1  GCTCATTCTCATCTGCTCTGACCTTTTCTCTCTCCTCTTCAGAAACATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTCTCATCTGCTCTGACCTTTTCTCTCTCCTCTTCAGAAACATTC  100

seq1  CCTGAGCGGATAGAATAGTGGGTAGTAGCCCTGCCTGTTTAACCTTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCGGATAGAATAGTGGGTAGTAGCCCTGCCTGTTTAACCTTCTTC  150

seq1  ATTGTCTCTTCCCCCACTTCTTTCTTCTTTCCCATCTCTCCTTCTCTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTCTTCCCCCACTTCTTTCTTCTTTCCCATCTCTCCTTCTCTCCC  200

seq1  TCCATTTCTCCATCCCTCTCCCTCTTTTTCTTCTCCACTTTCCTTTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTCTCCATCCCTCTCCCTCTTTTTCTTCTCCACTTTCCTTTTTTC  250

seq1  TTTAAGGCTGTAACCGAGGCTCTTAAACGTGCCTGGATAAAATAGGACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGCTGTAACCGAGGCTCTTAAACGTGCCTGGATAAAATAGGACCC  300

seq1  AGGAATTCAAACCCCTTCCAGCACACAGAGATGTTGATCTCAGACTGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTCAAACCCCTTCCAGCACACAGAGATGTTGATCTCAGACTGCTA  350

seq1  ACATATTTCAAACTCCCCTGAAGTTCTCTGGTGTCTGAATCCCGCAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTCAAACTCCCCTGAAGTTCTCTGGTGTCTGAATCCCGCAGGCA  400

seq1  GATTATTCTAATTGCCTCTCTCCTACTCTCTGGATGGCTGGGTCACCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTCTAATTGCCTCTCTCCTACTCTCTGGATGGCTGGGTCACCTCC  450

seq1  ACCCACTGCTTCTCCTCCTGCTTGCAGCAAGCTCTGGCCTTTTAAAATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTGCTTCTCCTCCTGCTTGCAGCAAGCTCTGGCCTTTTAAAATTG  500

seq1  CTGCTTCTAATGTGCTACCAAAATAGGGAATCAGAAAACTAAGCTTGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCTAATGTGCTACCAAAATAGGGAATCAGAAAACTAAGCTTGTAA  550

seq1  CAATAGCTTCTGAAAGAAGAGCTAAGCTTCCTAAGTGGTTTTCTTGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCTTCTGAAAGAAGAGCTAAGCTTCCTAAGTGGTTTTCTTGTGTG  600

seq1  TAGCTCTTGGGGACATGTGCATTTATTTATTTGTGTGTATGTGTGTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTTGGGGACATGTGCATTTATTTATTTGTGTGTATGTGTGTGTGT  650

seq1  GTGTGTGTGTG  661
      |||||||||||
seq2  GTGTGTGTGTG  661

seq1: chr5_45362267_45363071
seq2: B6Ng01-076D04.g_67_873 (reverse)

seq1  ACTTCCACCAACAAAAATGCCTTTGAGCATCATTTCCTATCCTCCTCCCA  50
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACTTCCACCAACAAAAATGCC-TTGAGCATCATTTCCTATCCTCCTCCCA  49

seq1  CGCCCCTCTCAACACTGAATCAAGACCTATCACCAACTCTAATTGAACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCCTCTCAACACTGAATCAAGACCTATCACCAACTCTAATTGAACTA  99

seq1  AG-AATAACAGTA-TTTATAATTCAGTTGCATGGCTAT-AAACACTGATC  147
      || |||||||||| |||||||||||||||||||||||| |||||||||||
seq2  AGAAATAACAGTATTTTATAATTCAGTTGCATGGCTATAAAACACTGATC  149

seq1  TAACAAAGTGAGCACTGCCACCAACCACCATCCCCAACACCATGGCTAGC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAGTGAGCACTGCCACCAACCACCATCCCCAACACCATGGCTAGC  199

seq1  CTTAGGGAATTGGCAAAGCAGGCTGGACCAGGACCCTGTTGATTGATCCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGGAATTGGCAAAGCAGGCTGGACCAGGACCCTGTTGATTGATCCT  249

seq1  GTTCCTGTGGCAGCACCATCAACCACTCTGATCCAAGGATTTCTTTTTCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGTGGCAGCACCATCAACCACTCTGATCCAAGGATTTCTTTTTCT  299

seq1  GTTAAATGCTTCCATGGATTCAGCTACAAGGGCAAGGCCCAGTGTGATCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATGCTTCCATGGATTCAGCTACAAGGGCAAGGCCCAGTGTGATCC  349

seq1  CAAGAAATGAACTGATTGGCAAAGAGCAATAGTGAGTAAACAGTGTCTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAATGAACTGATTGGCAAAGAGCAATAGTGAGTAAACAGTGTCTTT  399

seq1  GGGGCCCTTATCTTGAGGAAAGGAATGCTGTAGCTTAGTGGGTTCCTCAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCCTTATCTTGAGGAAAGGAATGCTGTAGCTTAGTGGGTTCCTCAG  449

seq1  ACTTGGATCTCCTGGGGCTCTCTTGGTAAGGAACTAGCATGAAATACTTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGATCTCCTGGGGCTCTCTTGGTAAGGAACTAGCATGAAATACTTG  499

seq1  TAGTGTCTGGCTGGGAAACCCATATTGCTTCTGGGTTCTTTCAGATGGCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTCTGGCTGGGAAACCCATATTGCTTCTGGGTTCTTTCAGATGGCC  549

seq1  CTTGGAAGATGCGACAATCAGGATGATACAGTGAGTTCCCTGCAGGTAGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAGATGCGACAATCAGGATGATACAGTGAGTTCCCTGCAGGTAGT  599

seq1  TCCCTCCTGTCTTCCCTCTTACAGTGTGTCAGCTCAAAGTCCATAGGATA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCTGTCTTCCCTCTTACAGTGTGTCAGCTCAAAGTCCATAGGATA  649

seq1  ACAGTGACCTTTCATGTCTCAAGACATAATGTTCAGGAGTAAACTCTATC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGACCTTTCATGTCTCAAGACATAATGTTCAGGAGTAAACTCTATC  699

seq1  AGCTTTGTCCTGTTTGCCCTATTGGTTTGAAGCAAGACAGATTCCAACTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGTCCTGTTTGCCCTATTGGTTTGAAGCAAGACAGATTCCAACTG  749

seq1  TGCTAACAGGGAGAAGGTTATACAGAGGTGGGATTCCTTGAGTGTCAATG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAACAGGGAGAAGGTTATACAGAGGTGGGATTCCTTGAGTGTCAATG  799

seq1  TAGAATTC  805
      ||||||||
seq2  TAGAATTC  807