BAC Information

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BAC

Clone NameB6Ng01-076D10
Chromosome5 (Build37)
Map Location 87,247,044 - 87,340,156
singlet/doubletdoublet
Overlap geneA730098D12Rik, LOC622056, Ugt2b34
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e
Downstream geneUgt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076D10.bB6Ng01-076D10.g
ACCDH892544DH892545
length1,0091,105
definitionDH892544|Mus musculus domesticus DNA, BAC clone: B6Ng01-076D10, 5' end.DH892545|Mus musculus domesticus DNA, BAC clone: B6Ng01-076D10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,247,044 - 87,248,083)(87,339,044 - 87,340,156)
sequence
gaattcagaaaatgtcttatgtggtatctatttaagataccttttataca
cagattatttttcttaggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtcttggtatacattgcctgaaaaatgaggttactgtggaacttt
gacttgggtatgctagttttaaataccagggaccacaattaatttcaatg
cactcgttttctagattccactttctccagtttcctttttctcacaattt
ttagtaatttataaaatgactcactggttgactaaaagctttagttttct
aggagagtttaattatgcttttgatctctgagtcataaccttcatgtact
taaaaaatagaatttattcatataatatgctcagcatttttttgccattt
cattttctaatgccaggtttgctctgctgtataaatttagttgggcaaaa
tctcctgcactggtcccttcccaccatattatctctgtgtttataagatg
aattatgctctaaggtgtattttgtaacgaatttgtaaagtttttactct
tgaaatgataaaggaagaaagctttgaaaacagtgtactaacaattttct
ttttttaaaacaaaacaacaacaacaacaaaaacaccaaaagattagcta
gtcctagtgtgctcatctggctttaagtttttggtatcattactcaagaa
atgtcagaatgtccttggttcatacattaaataacatgggcaatctgcaa
cacttgttttagggcacatcctagtattagtgttttaaaaaaaaccaaca
acaaacagctgtagaagtatctttttcattactcagaagaatagaagaca
gtcttgtattctttagctgaaggcggctttcaatgtgtcttacattgagg
aatgttgactttagcaaacttgttctctcacctccatgttttatattatt
tggtagttcctatttggaatttcatgatgtggcttaggattaagagagga
gatatttag
gaattctgtgaatttagaaacagattattccaaaatgccaggtacaggac
cttgctataaaggcaacactggccaaacaagaactctgcaacgaaaagtc
aacagaatatttttttcaaagggagtaacttaagttacaacagaagcagg
ctctggcttttgccaagacttggatataaaacagtcctgagctgaaacca
aagttcaccttctctgagatcaaatgagttcctgctgatagatccattcc
aaggttcactttaaacaccctctttctgccttaattagtgtgtgattcaa
ggctccacttatctggaatttaaaggtatattgcaagtatcatttccata
ctgtagtttctattctaaacaaatgccttcataagagatcctagtcctcc
agggctagctacttgcacagaattatatttgagataccaatttttaaatc
ttattaatgttctcacaacctgtgtgtgtgtgtgtgtgtgtgtgtactat
atgcatgcttggtacatagaatatggcacaggatacccttgaactggagt
tatagatgtctatgaatcctgggaatctaactgagtcctatggaaagaca
gacagtgctcttgtctgttgactgttgagtcaacactccagactcagggt
ttgaaataaaacttgtttatttctctctttcttttatttcacttgtacat
ctttgtgtttgttgacttatatattggaaatagaatctcattagtgctct
agctgttttcaaactctcactgtaagccaggctagccttgaactcataga
gatctacttgcatctgcctcctgagtgctggtatcaaagatgagtgtcat
cttatctggctaacttaaacttcttttttaaatttttatgtaaaaataca
aataaaataaacagcaaccaggcacggtggctatacctttattcccagca
ctccagagtagagctttctgagtcccagccagcctggcctaccaaggagt
ttcagatagccagaactattacataaaattctgttttcaaacattaaata
aaataaataaataattggtatgcttttgtgtgttgtatatggcaaataca
cacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_87247044_87248083
seq2: B6Ng01-076D10.b_43_1051

seq1  GAATTCAGAAAATGTCTTATGTGGTATCTATTTAAGATACCTTTTATACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAATGTCTTATGTGGTATCTATTTAAGATACCTTTTATACA  50

seq1  CAGATTATTTTTCTTAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTATTTTTCTTAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  100

seq1  TGTGTGTCTTGGTATACATTGCCTGAAAAATGAGGTTACTGTGGAACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCTTGGTATACATTGCCTGAAAAATGAGGTTACTGTGGAACTTT  150

seq1  GACTTGGGTATGCTAGTTTTAAATACCAGGGACCACAATTAATTTCAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGGGTATGCTAGTTTTAAATACCAGGGACCACAATTAATTTCAATG  200

seq1  CACTCGTTTTCTAGATTCCACTTTCTCCAGTTTCCTTTTTCTCACAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGTTTTCTAGATTCCACTTTCTCCAGTTTCCTTTTTCTCACAATTT  250

seq1  TTAGTAATTTATAAAATGACTCACTGGTTGACTAAAAGCTTTAGTTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAATTTATAAAATGACTCACTGGTTGACTAAAAGCTTTAGTTTTCT  300

seq1  AGGAGAGTTTAATTATGCTTTTGATCTCTGAGTCATAACCTTCATGTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGTTTAATTATGCTTTTGATCTCTGAGTCATAACCTTCATGTACT  350

seq1  TAAAAAATAGAATTTATTCATATAATATGCTCAGCATTTTTTTGCCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATAGAATTTATTCATATAATATGCTCAGCATTTTTTTGCCATTT  400

seq1  CATTTTCTAATGCCAGGTTTGCTCTGCTGTATAAATTTAGTTGGGCAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTAATGCCAGGTTTGCTCTGCTGTATAAATTTAGTTGGGCAAAA  450

seq1  TCTCCTGCACTGGTCCCTTCCCACCATATTATCTCTGTGTTTATAAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGCACTGGTCCCTTCCCACCATATTATCTCTGTGTTTATAAGATG  500

seq1  AATTATGCTCTAAGGTGTATTTTGTAACGAATTTGTAAAGTTTTTACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGCTCTAAGGTGTATTTTGTAACGAATTTGTAAAGTTTTTACTCT  550

seq1  TGAAATGATAAAGGAAGAAAGCTTTGAAAACAGTGTACTAACAATTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGATAAAGGAAGAAAGCTTTGAAAACAGTGTACTAACAATTTTCT  600

seq1  TTTTTTAAAACAAAACAACAACAACAACAAAAACACCAAAAGATTAGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAACAAAACAACAACAACAACAAAAACACCAAAAGATTAGCTA  650

seq1  GTCCTAGTGTGCTCATCTGGCTTTAAGTTTTTGGTATCATTACTCAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAGTGTGCTCATCTGGCTTTAAGTTTTTGGTATCATTACTCAAGAA  700

seq1  ATGTCAGAATGTCCTTGGTTCATACATTAAATAACATGGGCAATCTGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGAATGTCCTTGGTTCATACATTAAATAACATGGGCAATCTGCAA  750

seq1  CACTTGTTTTAGGGCACATCCTAGTATTAGTGTTTTAAAAAAAAACCAAC  800
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CACTTGTTTTAGGGCACATCCTAGTATTAGTGTTTT-AAAAAAAACCAAC  799

seq1  AACAAAACAAGCTGTAGAAGTATCTTTTTCATTTACTCAAGAAGAATAGA  850
      ||||||   |||||||||||||||||||||| |||||| |||||||||||
seq2  AACAAA--CAGCTGTAGAAGTATCTTTTTCA-TTACTC-AGAAGAATAGA  845

seq1  AGACAAGTCTTGTATTCTTTAGCTTGAAGGCCGGCTTTTCAAATTGTGTC  900
      |||| |||||||||||||||||| |||||| |||| ||||||  ||||||
seq2  AGAC-AGTCTTGTATTCTTTAGC-TGAAGG-CGGC-TTTCAA--TGTGTC  889

seq1  TTACAATTGAGGAAATGTATGACTTTAGCATAACTTTGTTTCTCTCACCT  950
      |||| ||||||| ||||| ||||||||||| |||||   |||||||||||
seq2  TTAC-ATTGAGG-AATGT-TGACTTTAGCA-AACTT--GTTCTCTCACCT  933

seq1  CCATGTTTTTATTTATTTATTTTGGTTAAGGTTTCCTATTTGTAAATTTC  1000
      ||||||     ||||| |  ||||||  ||  ||||||||||  ||||||
seq2  CCATGT-----TTTATATTATTTGGT--AG--TTCCTATTTG-GAATTTC  973

seq1  ATTGAGTGTGCTTTAAGAATTAAGAGAGAGGAGA-ATTTAG  1040
      ||   ||| ||||  || ||||  |||||||||| ||||||
seq2  ATGATGTG-GCTT--AGGATTA--AGAGAGGAGATATTTAG  1009

seq1: chr5_87339044_87340156
seq2: B6Ng01-076D10.g_69_1173 (reverse)

seq1  GTGTGTG----TGCGCATATACATACACAC-ATAGCATA-CAATTATTTA  44
      |||||||    ||| |||||||| |||||| | |||||| ||||||||||
seq2  GTGTGTGTATTTGC-CATATACA-ACACACAAAAGCATACCAATTATTTA  48

seq1  TTTTATTTTTATTTTATTGTTTTTGAGACAGGAATTTTATGT-ATAGTTC  93
      |||   |||||||| |   | ||||| |   ||||||||||| |||||||
seq2  TTT--ATTTTATTTAA---TGTTTGAAAACAGAATTTTATGTAATAGTTC  93

seq1  TGGCTATCCTGAAACTTCCTTGGTAGGCCAGGCTGGCTTGGGACTCAGAG  143
      ||||||| ||||||| ||||||||||||||||||||| ||||||||||| 
seq2  TGGCTAT-CTGAAAC-TCCTTGGTAGGCCAGGCTGGC-TGGGACTCAGAA  140

seq1  AGCTCTACCTCTGGAGTGCTGGGATTAAAGGTATATGCCACCGTGCCTGG  193
      ||||||| |||||||||||||||| |||||||||| ||||||||||||||
seq2  AGCTCTA-CTCTGGAGTGCTGGGAATAAAGGTATA-GCCACCGTGCCTGG  188

seq1  TTGCTGTTTTATTTTATTTGTATTTTTTACATAAAAATTTTAAAAAAGAA  243
      |||||| ||||||||||||||| |||||||||||||| ||||||||||||
seq2  TTGCTG-TTTATTTTATTTGTA-TTTTTACATAAAAA-TTTAAAAAAGAA  235

seq1  GTTTAAGTTAGCCAGATAAGATGACACTCATCTTTGATACCAGCACTCAG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGTTAGCCAGATAAGATGACACTCATCTTTGATACCAGCACTCAG  285

seq1  GAGGCAGATGCAAGTAGATCTCTATGAGTTCAAGGCTAGCCTGGCTTACA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGATGCAAGTAGATCTCTATGAGTTCAAGGCTAGCCTGGCTTACA  335

seq1  GTGAGAGTTTGAAAACAGCTAGAGCACTAATGAGATTCTATTTCCAATAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGTTTGAAAACAGCTAGAGCACTAATGAGATTCTATTTCCAATAT  385

seq1  ATAAGTCAACAAACACAAAGATGTACAAGTGAAATAAAAGAAAGAGAGAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTCAACAAACACAAAGATGTACAAGTGAAATAAAAGAAAGAGAGAA  435

seq1  ATAAACAAGTTTTATTTCAAACCCTGAGTCTGGAGTGTTGACTCAACAGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAGTTTTATTTCAAACCCTGAGTCTGGAGTGTTGACTCAACAGT  485

seq1  CAACAGACAAGAGCACTGTCTGTCTTTCCATAGGACTCAGTTAGATTCCC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGACAAGAGCACTGTCTGTCTTTCCATAGGACTCAGTTAGATTCCC  535

seq1  AGGATTCATAGACATCTATAACTCCAGTTCAAGGGTATCCTGTGCCATAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTCATAGACATCTATAACTCCAGTTCAAGGGTATCCTGTGCCATAT  585

seq1  TCTATGTACCAAGCATGCATATAGTACACACACACACACACACACACACA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTACCAAGCATGCATATAGTACACACACACACACACACACACACA  635

seq1  GGTTGTGAGAACATTAATAAGATTTAAAAATTGGTATCTCAAATATAATT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGAGAACATTAATAAGATTTAAAAATTGGTATCTCAAATATAATT  685

seq1  CTGTGCAAGTAGCTAGCCCTGGAGGACTAGGATCTCTTATGAAGGCATTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAAGTAGCTAGCCCTGGAGGACTAGGATCTCTTATGAAGGCATTT  735

seq1  GTTTAGAATAGAAACTACAGTATGGAAATGATACTTGCAATATACCTTTA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGAATAGAAACTACAGTATGGAAATGATACTTGCAATATACCTTTA  785

seq1  AATTCCAGATAAGTGGAGCCTTGAATCACACACTAATTAAGGCAGAAAGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGATAAGTGGAGCCTTGAATCACACACTAATTAAGGCAGAAAGA  835

seq1  GGGTGTTTAAAGTGAACCTTGGAATGGATCTATCAGCAGGAACTCATTTG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTTAAAGTGAACCTTGGAATGGATCTATCAGCAGGAACTCATTTG  885

seq1  ATCTCAGAGAAGGTGAACTTTGGTTTCAGCTCAGGACTGTTTTATATCCA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGAGAAGGTGAACTTTGGTTTCAGCTCAGGACTGTTTTATATCCA  935

seq1  AGTCTTGGCAAAAGCCAGAGCCTGCTTCTGTTGTAACTTAAGTTACTCCC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGGCAAAAGCCAGAGCCTGCTTCTGTTGTAACTTAAGTTACTCCC  985

seq1  TTTGAAAAAAATATTCTGTTGACTTTTCGTTGCAGAGTTCTTGTTTGGCC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAAAAATATTCTGTTGACTTTTCGTTGCAGAGTTCTTGTTTGGCC  1035

seq1  AGTGTTGCCTTTATAGCAAGGTCCTGTACCTGGCATTTTGGAATAATCTG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGCCTTTATAGCAAGGTCCTGTACCTGGCATTTTGGAATAATCTG  1085

seq1  TTTCTAAATTCACAGAATTC  1113
      ||||||||||||||||||||
seq2  TTTCTAAATTCACAGAATTC  1105