BAC Information

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BAC

Clone NameB6Ng01-076D24
Chromosome5 (Build37)
Map Location 100,281,770 - 100,401,175
singlet/doubletdoublet
Overlap geneLOC100040763, LOC100040774, Hnrpd
Upstream geneBmp3, Prkg2, LOC100041680, Rasgef1b, A930011G23Rik, LOC100040738, LOC666364
Downstream gene4930524J08Rik, Hnrpdl, Enoph1, BC062109, LOC666417, Sec31a, LOC100041797, Lin54, Cops4, Plac8, Coq2, Hpse, Hel308, Mrps18c, Ccdc98, A230097K15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076D24.bB6Ng01-076D24.g
ACCDH892570DH892571
length1,043651
definitionDH892570|Mus musculus domesticus DNA, BAC clone: B6Ng01-076D24, 5' end.DH892571|Mus musculus domesticus DNA, BAC clone: B6Ng01-076D24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,400,143 - 100,401,175)(100,281,770 - 100,282,420)
sequence
gaattcactgtgtagaccaactgtcctcaagctcccaaagagtctgcctc
ctgaaaggagggaagtctctagtcttcctgggaaaactgggaggatgttt
tcaacctagttatcttttttatgcaggttgatttcggtttcctttgaagt
ttgagatttaacataaaagaatttaaaatcttgctttgaaaatatatgct
cttttatgtgttagtcttgcatcctttttagcacttagctttaaaaagtg
taatatagaaaaaaacttactgagtaattgcctgtttaatagtgggcagc
taatatcggtgtgtagattttactgatgatttttttttttgattagctaa
acaatacagttttaaatagttaaaaagtagttttcaaatgccattaacca
catcagatacaagttttgttattgtcaagggtttgtcaggctatttccag
gatagtttttatatatatggtatatgtatatccctactgacagttgtcca
gggttaaaaagtaatggcctcattcttagaagtagcatgatgatgtttaa
aataaaccctaatttctaaggaaaatgttaattaatacgtgccagggaga
ttttattagagtttatcattgtagcattttaaaagttgagctttaatgat
ggggtaccagaagaattatgtaagtaagtattcttgaataatattactat
aaaggatgccagtgaatgggctgatatggctcaagaaaaatgtattaagc
taacacttggtgtattttttttttttttttatgtaagataatgagctgat
ggaagactttaaacattgttttatctgaaaattgggtaagggtaaaagcc
tcagggaaagcatctttagatacaatacttatcattgagtttggagtgtt
gttgtcttcatagtttagaaaaaattagcttttttatgtacttgggagag
gatgaggggtatttttattttttttaagacagagtcaaacagtagttcag
gcatatgggtccttctgggtaagtttctctaaggtgctaggat
gaattcttatacacactcaatctcatattgagtggattcagcaacagagc
aaaatggaatagaaacaacctaattaattctagaaaagcaagtgcaagcc
caaatatgaaaaacttaaaaaggtagtaccataaataaataagtaaatac
ttgtaaatactgaagaaagactcagatgcagagaagagagggtattgtag
aaaaatcttatctaagaataaaacaattaaattataaatagcaaatagta
aatataattcaataaaatatataagactatcaaataggattaaacaaaga
tagactagaggtacaactcagtggaatgtataaagttctaagttaaagcc
ctagcagcaagctaacccattcctggtacttaggtttttatttgctagta
tggggtatctatgtgaggtatccctctttgttgtaggatagttccataaa
acctctttttatatacatatatatgtatgctttgtgaatcttccatagta
ctaggattccataaagccttttcaaagaaacgagtgttctttaagggtga
tcctggataggtcaaccacaagccaatgatgacttcatacctatgagcat
ctaagcagaacaaattggacttggtaagggagagggagagggagagggag
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_100400143_100401175
seq2: B6Ng01-076D24.b_43_1085 (reverse)

seq1  ATCCTAGCA-CTTAG-GAAACT--AGCAGGAGGACCAATA-GCCTGAACT  45
      ||||||||| ||||| ||||||    ||| |||||| ||| |||||||||
seq2  ATCCTAGCACCTTAGAGAAACTTACCCAGAAGGACCCATATGCCTGAACT  50

seq1  ACTGTTTGACTCTGTCTTAAAAAAA--TAAAATA-CCCTCATCCTCTCCC  92
      |||||||||||||||||||||||||   |||||| |||||||||||||||
seq2  ACTGTTTGACTCTGTCTTAAAAAAAATAAAAATACCCCTCATCCTCTCCC  100

seq1  AAGTACAT-AAAAAGCTAATTTTTTCTAAACTATGAAGACAACAACACTC  141
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACATAAAAAAGCTAATTTTTTCTAAACTATGAAGACAACAACACTC  150

seq1  CAAACTCAATGATAAGTATTGTATCTAAAGATGCTTTCCCTGAGGCTTTT  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCAATGATAAGTATTGTATCTAAAGATGCTTTCCCTGAGGCTTTT  200

seq1  ACCCTTACCCAATTTTCAGATAAAACAATGTTTAAAGTCTTCCATCAGCT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTACCCAATTTTCAGATAAAACAATGTTTAAAGTCTTCCATCAGCT  250

seq1  CATTATCTTACAT-AAAAAAAAAAAAAAATACACCAAGTGTTAGCTTAAT  290
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CATTATCTTACATAAAAAAAAAAAAAAAATACACCAAGTGTTAGCTTAAT  300

seq1  ACATTTTTCTTGAGCCATATCAGCCCATTCACTGGCATCCTTTATAGTAA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTCTTGAGCCATATCAGCCCATTCACTGGCATCCTTTATAGTAA  350

seq1  TATTATTCAAGAATACTTACTTACATAATTCTTCTGGTACCCCATCATTA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTCAAGAATACTTACTTACATAATTCTTCTGGTACCCCATCATTA  400

seq1  AAGCTCAACTTTTAAAATGCTACAATGATAAACTCTAATAAAATCTCCCT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCAACTTTTAAAATGCTACAATGATAAACTCTAATAAAATCTCCCT  450

seq1  GGCACGTATTAATTAACATTTTCCTTAGAAATTAGGGTTTATTTTAAACA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACGTATTAATTAACATTTTCCTTAGAAATTAGGGTTTATTTTAAACA  500

seq1  TCATCATGCTACTTCTAAGAATGAGGCCATTACTTTTTAACCCTGGACAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATGCTACTTCTAAGAATGAGGCCATTACTTTTTAACCCTGGACAA  550

seq1  CTGTCAGTAGGGATATACATATACCATATATATAAAAACTATCCTGGAAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGTAGGGATATACATATACCATATATATAAAAACTATCCTGGAAA  600

seq1  TAGCCTGACAAACCCTTGACAATAACAAAACTTGTATCTGATGTGGTTAA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGACAAACCCTTGACAATAACAAAACTTGTATCTGATGTGGTTAA  650

seq1  TGGCATTTGAAAACTACTTTTTAACTATTTAAAACTGTATTGTTTAGCTA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTTGAAAACTACTTTTTAACTATTTAAAACTGTATTGTTTAGCTA  700

seq1  ATCAAAAAAAAAAATCATCAGTAAAATCTACACACCGATATTAGCTGCCC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAAAAAAAATCATCAGTAAAATCTACACACCGATATTAGCTGCCC  750

seq1  ACTATTAAACAGGCAATTACTCAGTAAGTTTTTTTCTATATTACACTTTT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTAAACAGGCAATTACTCAGTAAGTTTTTTTCTATATTACACTTTT  800

seq1  TAAAGCTAAGTGCTAAAAAGGATGCAAGACTAACACATAAAAGAGCATAT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTAAGTGCTAAAAAGGATGCAAGACTAACACATAAAAGAGCATAT  850

seq1  ATTTTCAAAGCAAGATTTTAAATTCTTTTATGTTAAATCTCAAACTTCAA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAAAGCAAGATTTTAAATTCTTTTATGTTAAATCTCAAACTTCAA  900

seq1  AGGAAACCGAAATCAACCTGCATAAAAAAGATAACTAGGTTGAAAACATC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACCGAAATCAACCTGCATAAAAAAGATAACTAGGTTGAAAACATC  950

seq1  CTCCCAGTTTTCCCAGGAAGACTAGAGACTTCCCTCCTTTCAGGAGGCAG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGTTTTCCCAGGAAGACTAGAGACTTCCCTCCTTTCAGGAGGCAG  1000

seq1  ACTCTTTGGGAGCTTGAGGACAGTTGGTCTACACAGTGAATTC  1033
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTGGGAGCTTGAGGACAGTTGGTCTACACAGTGAATTC  1043

seq1: chr5_100281770_100282420
seq2: B6Ng01-076D24.g_67_717

seq1  GAATTCTTATACACACTCAATCTCATATTGAGTGGATTCAGCAACAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATACACACTCAATCTCATATTGAGTGGATTCAGCAACAGAGC  50

seq1  AAAATGGAATAGAAACAACCTAATTAATTCTAGAAAAGCAAGTGCAAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGAATAGAAACAACCTAATTAATTCTAGAAAAGCAAGTGCAAGCC  100

seq1  CAAATATGAAAAACTTAAAAAGGTAGTACCATAAATAAATAAGTAAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATGAAAAACTTAAAAAGGTAGTACCATAAATAAATAAGTAAATAC  150

seq1  TTGTAAATACTGAAGAAAGACTCAGATGCAGAGAAGAGAGGGTATTGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAATACTGAAGAAAGACTCAGATGCAGAGAAGAGAGGGTATTGTAG  200

seq1  AAAAATCTTATCTAAGAATAAAACAATTAAATTATAAATAGCAAATAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTTATCTAAGAATAAAACAATTAAATTATAAATAGCAAATAGTA  250

seq1  AATATAATTCAATAAAATATATAAGACTATCAAATAGGATTAAACAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAATTCAATAAAATATATAAGACTATCAAATAGGATTAAACAAAGA  300

seq1  TAGACTAGAGGTACAACTCAGTGGAATGTATAAAGTTCTAAGTTAAAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTAGAGGTACAACTCAGTGGAATGTATAAAGTTCTAAGTTAAAGCC  350

seq1  CTAGCAGCAAGCTAACCCATTCCTGGTACTTAGGTTTTTATTTGCTAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAGCAAGCTAACCCATTCCTGGTACTTAGGTTTTTATTTGCTAGTA  400

seq1  TGGGGTATCTATGTGAGGTATCCCTCTTTGTTGTAGGATAGTTCCATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTATCTATGTGAGGTATCCCTCTTTGTTGTAGGATAGTTCCATAAA  450

seq1  ACCTCTTTTTATATACATATATATGTATGCTTTGTGAATCTTCCATAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTTTTATATACATATATATGTATGCTTTGTGAATCTTCCATAGTA  500

seq1  CTAGGATTCCATAAAGCCTTTTCAAAGAAACGAGTGTTCTTTAAGGGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATTCCATAAAGCCTTTTCAAAGAAACGAGTGTTCTTTAAGGGTGA  550

seq1  TCCTGGATAGGTCAACCACAAGCCAATGATGACTTCATACCTATGAGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGATAGGTCAACCACAAGCCAATGATGACTTCATACCTATGAGCAT  600

seq1  CTAAGCAGAACAAATTGGACTTGGTAAGGGAGAGGGAGAGGGAGAGGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCAGAACAAATTGGACTTGGTAAGGGAGAGGGAGAGGGAGAGGGAG  650

seq1  A  651
      |
seq2  A  651