BAC Information

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BAC

Clone NameB6Ng01-076E03
Chromosome5 (Build37)
Map Location 20,730,292 - 20,858,454
singlet/doubletdoublet
Overlap geneA530088I07Rik
Upstream geneMagi2, LOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12, EG626903
Downstream geneFgl2, AI847670, Fbxl13, LOC625004, LOC667253, Armc10, AB112350, Pmpcb, Dnajc2, Psmc2, Slc26a5, Reln, Dnaja1-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076E03.bB6Ng01-076E03.g
ACCDH892576DH892577
length286989
definitionDH892576|Mus musculus domesticus DNA, BAC clone: B6Ng01-076E03, 5' end.DH892577|Mus musculus domesticus DNA, BAC clone: B6Ng01-076E03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,730,292 - 20,730,577)(20,857,451 - 20,858,454)
sequence
atacacatgaaaccaggatggatttaggggacacatacaggtgctctggg
atctttaacatcactccccacagcctaacagcaacggaccaggagagcaa
gaactagggctgtgtgggcccttgtgctttgtacttaaccctgagttcca
gtgagcactggagaaagtcagagcgggtgcagacatgaggctgtaccatc
ctgaagctcttttcctggtccagctcagggtcatgagtttttagtaaatg
tgtatgtatgtatgtatgtatgtatgtatgtatgta
gaattctctttgccatggaaagtaacaaatacacattccaggagttaaga
cgtgggcctcttggtgagagcattaatctacctaatacaggaactatttc
atggcactgaaatgaccagtggaccttaaagacagaagacaggttaagag
gggttgcagcttctggataacaaagaccctgcacatcatgtaatagaagc
ttaagtgctgaggccaaggtgagaattgtgtcatctggtagcttatacga
aggacagagtcaaggtagataagacataaatctgtgaaagctgtgcattg
ccaacatcttagtaaggagggataaggctttgtgcatggcactttgtaga
ttgtctaaaacaatcgagaagaacgtaattcaacaggatttataaaagaa
atccccatagtgcagaagccatgcttctttacggggtagggccaaatctt
gaggaacactaacttttttttcaaaatttattttttattacactaataaa
atttattttaaaatatacaactcagtattgacttctttaagtcatcaaaa
taatttataatagctaaatgtctcttaaatatacatggtatcttctgaag
ataaaagtaatatgtactcaaccagtttttagaatctatttggaacatta
aacatgatagaagtagaaaaaaattcttatgaagtcctctatgaaaggaa
attgtcacaagttcctgattaaactgaaaccatttcatctccaagggaga
ctacagagtgtaactgtggcttcctaaaatgaattgggtaatgttccttc
tgtttctattttgtgtaatagtttgaagagttttggaattaggtcctctt
tgaaggtctgataaattcttcactaacccacctggctatgttttgttggg
aaacttctttctttttttttttttttttagaagggggaccctttattttt
gctttggagaacaggtttgaacatttacattgatgtgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_20730292_20730577
seq2: B6Ng01-076E03.b_51_336

seq1  ATACACATGAAACCAGGATGGATTTAGGGGACACATACAGGTGCTCTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACATGAAACCAGGATGGATTTAGGGGACACATACAGGTGCTCTGGG  50

seq1  ATCTTTAACATCACTCCCCACAGCCTAACAGCAACGGACCAGGAGAGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAACATCACTCCCCACAGCCTAACAGCAACGGACCAGGAGAGCAA  100

seq1  GAACTAGGGCTGTGTGGGCCCTTGTGCTTTGTACTTAACCCTGAGTTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGGGCTGTGTGGGCCCTTGTGCTTTGTACTTAACCCTGAGTTCCA  150

seq1  GTGAGCACTGGAGAAAGTCAGAGCGGGTGCAGACATGAGGCTGTACCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCACTGGAGAAAGTCAGAGCGGGTGCAGACATGAGGCTGTACCATC  200

seq1  CTGAAGCTCTTTTCCTGGTCCAGCTCAGGGTCATGAGTTTTTAGTAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCTCTTTTCCTGGTCCAGCTCAGGGTCATGAGTTTTTAGTAAATG  250

seq1  TGTATGTATGTATGTATGTATGTATGTATGTATGTA  286
      ||||||||||||||||||||||||||||||||||||
seq2  TGTATGTATGTATGTATGTATGTATGTATGTATGTA  286

seq1: chr5_20857451_20858454
seq2: B6Ng01-076E03.g_70_1058 (reverse)

seq1  GACACATCAAAATGTTAAATGTCTAAACCTGTTCTCCAAAGCAAAAATAA  50
      ||||||||  |||| |||||||  ||||||||||||||||||||||||||
seq2  GACACATC--AATG-TAAATGTTCAAACCTGTTCTCCAAAGCAAAAATAA  47

seq1  AAGGGTCACCATCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTT  100
      | ||  | || |||        ||||||||||||||||| ||| ||||||
seq2  AGGGTCCCCCTTCT--------AAAAAAAAAAAAAAAAAGAAAGAAGTTT  89

seq1  CCCAACAAAAACATAGCCCAGGTGGGTTTAGTGAAGAATTTTATCAGACC  150
      |||||| ||||||||| ||||||||| ||||||||||| |||||||||||
seq2  CCCAAC-AAAACATAG-CCAGGTGGG-TTAGTGAAGAA-TTTATCAGACC  135

seq1  TTCAAAGAGGACCTAATTCCAAAACTCTTCAAACTATTACACAAAATAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGAGGACCTAATTCCAAAACTCTTCAAACTATTACACAAAATAGA  185

seq1  AACAGAAGGAACATTACCCAATTCATTTTAGGAAGCCACAGTTACACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAGGAACATTACCCAATTCATTTTAGGAAGCCACAGTTACACTCT  235

seq1  GTAGTCTCCCTTGGAGATGAAATGGTTTCAGTTTAATCAGGAACTTGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCTCCCTTGGAGATGAAATGGTTTCAGTTTAATCAGGAACTTGTGA  285

seq1  CAATTTCCTTTCATAGAGGACTTCATAAGAATTTTTTTCTACTTCTATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCCTTTCATAGAGGACTTCATAAGAATTTTTTTCTACTTCTATCA  335

seq1  TGTTTAATGTTCCAAATAGATTCTAAAAACTGGTTGAGTACATATTACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAATGTTCCAAATAGATTCTAAAAACTGGTTGAGTACATATTACTT  385

seq1  TTATCTTCAGAAGATACCATGTATATTTAAGAGACATTTAGCTATTATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTCAGAAGATACCATGTATATTTAAGAGACATTTAGCTATTATAA  435

seq1  ATTATTTTGATGACTTAAAGAAGTCAATACTGAGTTGTATATTTTAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTGATGACTTAAAGAAGTCAATACTGAGTTGTATATTTTAAAAT  485

seq1  AAATTTTATTAGTGTAATAAAAAATAAATTTTGAAAAAAAAGTTAGTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTATTAGTGTAATAAAAAATAAATTTTGAAAAAAAAGTTAGTGTT  535

seq1  CCTCAAGATTTGGCCCTACCCCGTAAAGAAGCATGGCTTCTGCACTATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGATTTGGCCCTACCCCGTAAAGAAGCATGGCTTCTGCACTATGG  585

seq1  GGATTTCTTTTATAAATCCTGTTGAATTACGTTCTTCTCGATTGTTTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCTTTTATAAATCCTGTTGAATTACGTTCTTCTCGATTGTTTTAG  635

seq1  ACAATCTACAAAGTGCCATGCACAAAGCCTTATCCCTCCTTACTAAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTACAAAGTGCCATGCACAAAGCCTTATCCCTCCTTACTAAGATG  685

seq1  TTGGCAATGCACAGCTTTCACAGATTTATGTCTTATCTACCTTGACTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAATGCACAGCTTTCACAGATTTATGTCTTATCTACCTTGACTCTG  735

seq1  TCCTTCGTATAAGCTACCAGATGACACAATTCTCACCTTGGCCTCAGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCGTATAAGCTACCAGATGACACAATTCTCACCTTGGCCTCAGCAC  785

seq1  TTAAGCTTCTATTACATGATGTGCAGGGTCTTTGTTATCCAGAAGCTGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTTCTATTACATGATGTGCAGGGTCTTTGTTATCCAGAAGCTGCA  835

seq1  ACCCCTCTTAACCTGTCTTCTGTCTTTAAGGTCCACTGGTCATTTCAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTCTTAACCTGTCTTCTGTCTTTAAGGTCCACTGGTCATTTCAGTG  885

seq1  CCATGAAATAGTTCCTGTATTAGGTAGATTAATGCTCTCACCAAGAGGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAATAGTTCCTGTATTAGGTAGATTAATGCTCTCACCAAGAGGCC  935

seq1  CACGTCTTAACTCCTGGAATGTGTATTTGTTACTTTCCATGGCAAAGAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTCTTAACTCCTGGAATGTGTATTTGTTACTTTCCATGGCAAAGAGA  985

seq1  ATTC  1004
      ||||
seq2  ATTC  989