BAC Information

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BAC

Clone NameB6Ng01-076F01
Chromosome5 (Build37)
Map Location 13,355,721 - 13,527,722
singlet/doubletdoublet
Overlap geneSema3a
Upstream geneSema3d, LOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717
Downstream geneLOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957, Pclo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076F01.bB6Ng01-076F01.g
ACCDH892618DH892619
length9881,169
definitionDH892618|Mus musculus domesticus DNA, BAC clone: B6Ng01-076F01, 5' end.DH892619|Mus musculus domesticus DNA, BAC clone: B6Ng01-076F01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,355,721 - 13,356,616)(13,526,539 - 13,527,722)
sequence
gaattcctgaagcttttgagttgtttgccttctgtcttaagaggcttatc
aggaggaaggaatgttttcccctcaaaggaaactgttacacgtcagtgag
tggtctgtcaaaatgtgttataaatattgtatgtttttcattctatacta
acttgctcattttaaccttgctgtattttattttgtagaaagataatgtc
atttttctagctgcacatgtcattaatgccaactttataatatcttttaa
ctctggaagaacagaaagaggaagagattgagaaaaaaagaaaaagtaca
cgcgaggcacctttcattgttaatttttttattttgtctaaaacagaaaa
tctgatacctcagcagaaaaatatggctggaaattactatgaagctaaat
gcagagacccagcttcagtttcttctggtttctgagtatatatgatagct
tgaatgagaaatgtctaccatagtttcaagtgtttgaacatttagtcccc
aattgatagtgctatttgggagatttatgaggtacggccttacaagaaga
agtatgttactggttgccagaattgaaaatttaaagtcttgccatttcca
gctttccctctgcttcctttctgtcacttaaaaggttagctctcagcttg
ctctcatcatgcctatctgctgccaagcttcctcatcatgatatcgatca
tctcttatccctctggacccataagcacaagaaatatcttctctcataca
ttgccctgagcattgtgtttaaccacagcagtgaaaaagcaactgataca
atgtggatgccatatgaacagccagccagctgcttctgttgctagtcttc
tctacctgctagtgtatcttctctagcatgatagaatgatccctttcagc
ctaagccaaggtaaatccttcctttgttaagtagtttattttaagttatt
tggtcccagcagcatgaaaaataactaaagacaagttt
gaattctgagctcatataaaataggtaattcatcttacttattaaaaaat
gctattggacctctgacatggcttatatcttcaaccgtgttagaattaaa
attgtttattaaaagtgttttacaggcgattcaggactgggtctctggtt
ccaatattaatctgagctcttgtagtttatttgaagtcatgtttcttggt
tttatttttctaaaaatgcatcctgtggagaaatttgaatctttggagaa
tgtgcaatatcctagtctatgaccacagaggaagttctgctggttccaat
gagggcagagcatcctggtacgaccgtgagactgggaaaggaagtggagt
gatgactcacataccatttcaattacaggagggaaaaaaaagagagagag
aaacgaaaagaaaacaagcaggccggtttatccacaggcacgatcctttt
aggaaattccactaaaagaaaacaggtcttcctgaaatgaatggaaaagc
ctcacactctgggcatgtaattaggtctgcttgtgttcaccgggctgggc
tctctcaaggatctttgtggtttcattgtaccaaagccagatcaggttgc
cctttcaccctctctccagtaaaaccactgacagagagctctacacatct
tcccagcgttccctggtcaaaggagtgtgctacaggacaatgccagctag
catggaaaccttgctctgactcagaatctctgtgctctttatacattgct
ctgcctcctttttcattttgtagtaactataggacgtggtcagtattacc
tttccatcacacataaaggtcaaagtcaaggagaaacatcattttaaagc
tgatggattttcgttgaaattatgcagcagtcgttattagtcaaggacat
gaacgatgtggaaaacagccttcatcaaataaaaaaaaaaatgtggctag
gcatccatctatgctaatggatggctaaagaatacagtaactagatagcc
cactaggcagcggaaatttgtttttctaccacaaatatatacagaaaaag
cccagttattttctaattatgcagcctgaaattagattgatgtaactaac
atattggaagaaatttatgacgtgcgaagaaaaatgactttaggcaattc
aaccaaggtgttacatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_13355721_13356616
seq2: B6Ng01-076F01.b_45_940

seq1  GAATTCCTGAAGCTTTTGAGTTGTTTGCCTTCTGTCTTAAGAGGCTTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAAGCTTTTGAGTTGTTTGCCTTCTGTCTTAAGAGGCTTATC  50

seq1  AGGAGGAAGGAATGTTTTCCCCTCAAAGGAAACTGTTACACGTCAGTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAAGGAATGTTTTCCCCTCAAAGGAAACTGTTACACGTCAGTGAG  100

seq1  TGGTCTGTCAAAATGTGTTATAAATATTGTATGTTTTTCATTCTATACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGTCAAAATGTGTTATAAATATTGTATGTTTTTCATTCTATACTA  150

seq1  ACTTGCTCATTTTAACCTTGCTGTATTTTATTTTGTAGAAAGATAATGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTCATTTTAACCTTGCTGTATTTTATTTTGTAGAAAGATAATGTC  200

seq1  ATTTTTCTAGCTGCACATGTCATTAATGCCAACTTTATAATATCTTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTAGCTGCACATGTCATTAATGCCAACTTTATAATATCTTTTAA  250

seq1  CTCTGGAAGAACAGAAAGAGGAAGAGATTGAGAAAAAAAGAAAAAGTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAAGAACAGAAAGAGGAAGAGATTGAGAAAAAAAGAAAAAGTACA  300

seq1  CGCGAGGCACCTTTCATTGTTAATTTTTTTATTTTGTCTAAAACAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGAGGCACCTTTCATTGTTAATTTTTTTATTTTGTCTAAAACAGAAAA  350

seq1  TCTGATACCTCAGCAGAAAAATATGGCTGGAAATTACTATGAAGCTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATACCTCAGCAGAAAAATATGGCTGGAAATTACTATGAAGCTAAAT  400

seq1  GCAGAGACCCAGCTTCAGTTTCTTCTGGTTTCTGAGTATATATGATAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGACCCAGCTTCAGTTTCTTCTGGTTTCTGAGTATATATGATAGCT  450

seq1  TGAATGAGAAATGTCTACCATAGTTTCAAGTGTTTGAACATTTAGTCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAGAAATGTCTACCATAGTTTCAAGTGTTTGAACATTTAGTCCCC  500

seq1  AATTGATAGTGCTATTTGGGAGATTTATGAGGTACGGCCTTACAAGAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATAGTGCTATTTGGGAGATTTATGAGGTACGGCCTTACAAGAAGA  550

seq1  AGTATGTTACTGGTTGCCAGAATTGAAAATTTAAAGTCTTGCCATTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTTACTGGTTGCCAGAATTGAAAATTTAAAGTCTTGCCATTTCCA  600

seq1  GCTTTCCCTCTGCTTCCTTTCTGTCACTTAAAAGGTTAGCTCTCAGCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCCTCTGCTTCCTTTCTGTCACTTAAAAGGTTAGCTCTCAGCTTG  650

seq1  CTCTCATCATGCCTATCTGCTGCCAAGCTTCCTCATCATGATATCGATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATCATGCCTATCTGCTGCCAAGCTTCCTCATCATGATATCGATCA  700

seq1  TCTCTTATCCCTCTGGACCCATAAGCACAAGAAATATCTTCTCTCATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTATCCCTCTGGACCCATAAGCACAAGAAATATCTTCTCTCATACA  750

seq1  TTGCCCTGAGCATTGTGTTTAACCACAGCAGTGAAAAAGCAACTGATACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTGAGCATTGTGTTTAACCACAGCAGTGAAAAAGCAACTGATACA  800

seq1  ATGTGGATGCCATATGAACAGCCAGCCAGCTGCTTCTGTTGCTAGTCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGATGCCATATGAACAGCCAGCCAGCTGCTTCTGTTGCTAGTCTTC  850

seq1  TCTACCTGCTAGTGTATCTTCTCTAGCATGATAGAATGATCCCTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTGCTAGTGTATCTTCTCTAGCATGATAGAATGATCCCTTT  896

seq1: chr5_13526539_13527722
seq2: B6Ng01-076F01.g_66_1234 (reverse)

seq1  AATATGTACAACCTTGGTTTGATATGTGCTAAAAGTCATGTTTTCCTTCT  50
      ||||||||  |||||||||  ||   |||  |||||||  |||| |||| 
seq2  AATATGTAACACCTTGGTTGAAT---TGCCTAAAGTCA--TTTTTCTTC-  44

seq1  GCACGTCATAAA-TTCTTCCAATATGTTTTAGTTTTAACCATCAATTCTA  99
      |||||||||||| |||||||||||||  ||||||     |||||| ||||
seq2  GCACGTCATAAATTTCTTCCAATATG--TTAGTT----ACATCAA-TCTA  87

seq1  ATTTCAGCTTCCAATAATTTAGAAAATAACTTGGCTTTTTCTGTATATAT  149
      |||||||  | | |||| ||||||||||||| ||||||||||||||||||
seq2  ATTTCAGGCTGC-ATAA-TTAGAAAATAACTGGGCTTTTTCTGTATATAT  135

seq1  TTGTGGTTAGAAAACAAATTTCCGCTGCCTAGTGGGCTATCTAGTTACTG  199
      |||||||   ||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTAGAAAAACAAATTTCCGCTGCCTAGTGGGCTATCTAGTTACTG  185

seq1  TATTCTTTAGCCATCCATTAGCATAGATGGATGCCTAGCCCACATTTTTT  249
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TATTCTTTAGCCATCCATTAGCATAGATGGATGCCTAG-CCACATTTTTT  234

seq1  TTTTTATTTGATGAAGGCTGTTTTCCACATCGTTCATGTCCTTGACTAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTGATGAAGGCTGTTTTCCACATCGTTCATGTCCTTGACTAAT  284

seq1  AACGACTGCTGCATAATTTCAACGAAAATCCATCAGCTTTAAAATGATGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGACTGCTGCATAATTTCAACGAAAATCCATCAGCTTTAAAATGATGT  334

seq1  TTCTCCTTGACTTTGACCTTTATGTGTGATGGAAAGGTAATACTGACCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTGACTTTGACCTTTATGTGTGATGGAAAGGTAATACTGACCAC  384

seq1  GTCCTATAGTTACTACAAAATGAAAAAGGAGGCAGAGCAATGTATAAAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTATAGTTACTACAAAATGAAAAAGGAGGCAGAGCAATGTATAAAGA  434

seq1  GCACAGAGATTCTGAGTCAGAGCAAGGTTTCCATGCTAGCTGGCATTGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGAGATTCTGAGTCAGAGCAAGGTTTCCATGCTAGCTGGCATTGTC  484

seq1  CTGTAGCACACTCCTTTGACCAGGGAACGCTGGGAAGATGTGTAGAGCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCACACTCCTTTGACCAGGGAACGCTGGGAAGATGTGTAGAGCTC  534

seq1  TCTGTCAGTGGTTTTACTGGAGAGAGGGTGAAAGGGCAACCTGATCTGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAGTGGTTTTACTGGAGAGAGGGTGAAAGGGCAACCTGATCTGGC  584

seq1  TTTGGTACAATGAAACCACAAAGATCCTTGAGAGAGCCCAGCCCGGTGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTACAATGAAACCACAAAGATCCTTGAGAGAGCCCAGCCCGGTGAA  634

seq1  CACAAGCAGACCTAATTACATGCCCAGAGTGTGAGGCTTTTCCATTCATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCAGACCTAATTACATGCCCAGAGTGTGAGGCTTTTCCATTCATT  684

seq1  TCAGGAAGACCTGTTTTCTTTTAGTGGAATTTCCTAAAAGGATCGTGCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAGACCTGTTTTCTTTTAGTGGAATTTCCTAAAAGGATCGTGCCT  734

seq1  GTGGATAAACCGGCCTGCTTGTTTTCTTTTCGTTTCTCTCTCTCTTTTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATAAACCGGCCTGCTTGTTTTCTTTTCGTTTCTCTCTCTCTTTTTT  784

seq1  TTCCCTCCTGTAATTGAAATGGTATGTGAGTCATCACTCCACTTCCTTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCCTGTAATTGAAATGGTATGTGAGTCATCACTCCACTTCCTTTC  834

seq1  CCAGTCTCACGGTCGTACCAGGATGCTCTGCCCTCATTGGAACCAGCAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTCACGGTCGTACCAGGATGCTCTGCCCTCATTGGAACCAGCAGA  884

seq1  ACTTCCTCTGTGGTCATAGACTAGGATATTGCACATTCTCCAAAGATTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTCTGTGGTCATAGACTAGGATATTGCACATTCTCCAAAGATTCA  934

seq1  AATTTCTCCACAGGATGCATTTTTAGAAAAATAAAACCAAGAAACATGAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTCCACAGGATGCATTTTTAGAAAAATAAAACCAAGAAACATGAC  984

seq1  TTCAAATAAACTACAAGAGCTCAGATTAATATTGGAACCAGAGACCCAGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATAAACTACAAGAGCTCAGATTAATATTGGAACCAGAGACCCAGT  1034

seq1  CCTGAATCGCCTGTAAAACACTTTTAATAAACAATTTTAATTCTAACACG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATCGCCTGTAAAACACTTTTAATAAACAATTTTAATTCTAACACG  1084

seq1  GTTGAAGATATAAGCCATGTCAGAGGTCCAATAGCATTTTTTAATAAGTA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAGATATAAGCCATGTCAGAGGTCCAATAGCATTTTTTAATAAGTA  1134

seq1  AGATGAATTACCTATTTTATATGAGCTCAGAATTC  1184
      |||||||||||||||||||||||||||||||||||
seq2  AGATGAATTACCTATTTTATATGAGCTCAGAATTC  1169