BAC Information

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BAC

Clone NameB6Ng01-076G10
Chromosome5 (Build37)
Map Location 115,448,563 - 115,610,425
singlet/doubletdoublet
Overlap geneSppl3, Acads, AA407659, 2410014A08Rik
Upstream geneDao1, Svop, Usp30, Alkbh2, Ung, Acacb, Foxn4, Myo1h, Kctd10, Ube3b, Mmab, Mvk, BC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1
Downstream geneCabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032, Cit, Prkab1, LOC545798, Ccdc60
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076G10.bB6Ng01-076G10.g
ACCDH892677DH892678
length177615
definitionDH892677|Mus musculus domesticus DNA, BAC clone: B6Ng01-076G10, 5' end.DH892678|Mus musculus domesticus DNA, BAC clone: B6Ng01-076G10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,448,563 - 115,448,739)(115,609,810 - 115,610,425)
sequence
tttcagagttcaccagcatcttttgtcctctttccaacccccccccaccc
cccccagggtttctctgtgtagctctggctgtcctggaactcactttgaa
gaccaggttggcctcgaactcagaaatctacctgcctctgcctcccgagt
gctggaattaaaggcttgtgcctccac
gaattccttttcccgggtaacataagagacaccgttcatttgcatcaaat
atggcctcactcacaggtagccagcctcacagcatacgtgggctggaagc
tgaatactgttgtgtggttctatacaggttacttcaccatcttcaacttt
ttaagtttctcatccataaaacggggggaacatttcctgttttttagctt
tctgaggtggatatgagattcaagtgtgtgggaacggatggctgtggaga
acctgctgtcagggccctgtcttggctacagtcctaagcttggcttttgg
atggcttcttcttctttttttttttccaagttctcttccgtgttacctgc
atttttccataacaagcatattgttttcgctgggcaaggtagcaccagcc
tgctgttttagctactcggaaagctgaggcaggaggatcacaaatttgag
gccagtctggacaacttagcaagagacagagtcaaagtctgggaatgcac
ctccagggtaggaaggaaccgtgctcagctcaaccctggtttcccagagg
agagaggtgcagggctagggagagaattttctgagtagatggatgtgttt
gggtcagcaaaggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_115448563_115448739
seq2: B6Ng01-076G10.b_49_225

seq1  TTTCAGAGTTCACCAGCATCTTTTGTCCTCTTTCCAACCCCCCCCCACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAGTTCACCAGCATCTTTTGTCCTCTTTCCAACCCCCCCCCACCC  50

seq1  CCCCCAGGGTTTCTCTGTGTAGCTCTGGCTGTCCTGGAACTCACTTTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGGGTTTCTCTGTGTAGCTCTGGCTGTCCTGGAACTCACTTTGAA  100

seq1  GACCAGGTTGGCCTCGAACTCAGAAATCTACCTGCCTCTGCCTCCCGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGTTGGCCTCGAACTCAGAAATCTACCTGCCTCTGCCTCCCGAGT  150

seq1  GCTGGAATTAAAGGCGTGTGCCTCCAC  177
      ||||||||||||||| |||||||||||
seq2  GCTGGAATTAAAGGCTTGTGCCTCCAC  177

seq1: chr5_115609810_115610425
seq2: B6Ng01-076G10.g_68_682 (reverse)

seq1  AGCCTTTGCTGACCCAAACACCATCCATCTACTCAGAAAATTCTCTCCCT  50
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGCCTTTGCTGACCCAAACA-CATCCATCTACTCAGAAAATTCTCTCCCT  49

seq1  AGCCCTGCACCTCTCTCCTCTGGGAAACCAGGGTTGAGCTGAGCACGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGCACCTCTCTCCTCTGGGAAACCAGGGTTGAGCTGAGCACGGTT  99

seq1  CCTTCCTACCCTGGAGGTGCATTCCCAGACTTTGACTCTGTCTCTTGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTACCCTGGAGGTGCATTCCCAGACTTTGACTCTGTCTCTTGCTA  149

seq1  AGTTGTCCAGACTGGCCTCAAATTTGTGATCCTCCTGCCTCAGCTTTCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCCAGACTGGCCTCAAATTTGTGATCCTCCTGCCTCAGCTTTCCG  199

seq1  AGTAGCTAAAACAGCAGGCTGGTGCTACCTTGCCCAGCGAAAACAATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTAAAACAGCAGGCTGGTGCTACCTTGCCCAGCGAAAACAATATG  249

seq1  CTTGTTATGGAAAAATGCAGGTAACACGGAAGAGAACTTGGAAAAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTATGGAAAAATGCAGGTAACACGGAAGAGAACTTGGAAAAAAAAA  299

seq1  AAGAAGAAGAAGCCATCCAAAAGCCAAGCTTAGGACTGTAGCCAAGACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGAAGCCATCCAAAAGCCAAGCTTAGGACTGTAGCCAAGACAG  349

seq1  GGCCCTGACAGCAGGTTCTCCACAGCCATCCGTTCCCACACACTTGAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGACAGCAGGTTCTCCACAGCCATCCGTTCCCACACACTTGAATC  399

seq1  TCATATCCACCTCAGAAAGCTAAAAAACAGGAAATGTTCCCCCCGTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCCACCTCAGAAAGCTAAAAAACAGGAAATGTTCCCCCCGTTTTA  449

seq1  TGGATGAGAAACTTAAAAAGTTGAAGATGGTGAAGTAACCTGTATAGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGAGAAACTTAAAAAGTTGAAGATGGTGAAGTAACCTGTATAGAAC  499

seq1  CACACAACAGTATTCAGCTTCCAGCCCACGTATGCTGTGAGGCTGGCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAACAGTATTCAGCTTCCAGCCCACGTATGCTGTGAGGCTGGCTAC  549

seq1  CTGTGAGTGAGGCCATATTTGATGCAAATGAACGGTGTCTCTTATGTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGTGAGGCCATATTTGATGCAAATGAACGGTGTCTCTTATGTTAC  599

seq1  CCGGGTAAAGGAATTC  616
      ||||| ||||||||||
seq2  CCGGGAAAAGGAATTC  615