BAC Information

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BAC

Clone NameB6Ng01-076P04
Chromosome5 (Build37)
Map Location 144,343,263 - 144,498,181
singlet/doubletdoublet
Overlap genePscd3, Usp42
Upstream geneLOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik
Downstream geneEif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1, 4930568B11Rik, Nptx2, EG621967, Tmem130
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076P04.bB6Ng01-076P04.g
ACCDH893060DH893061
length1,0351,054
definitionDH893060|Mus musculus domesticus DNA, BAC clone: B6Ng01-076P04, 5' end.DH893061|Mus musculus domesticus DNA, BAC clone: B6Ng01-076P04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,343,263 - 144,344,290)(144,497,462 - 144,498,181)
sequence
gaattccaggacagccaggacgacacagagaaaccctcttttgaaaaaaa
aaaaaaaaaaggaggaggggagaagtagctttgctgggtgtggtggtgca
tgcctgtagccttagtgctaaggagtctgagggaggaggttcttggctta
gagatgttcaagcaacatagtaaactcaaggtcagcttgtactctgagac
tctgtatcacacaaaaccaaaaacaagcaaaaaaaaaaaatggggggggg
gcatgttgtaggcataattctgtggtagagcacctgcctagaatccccca
gtgaggggctgggggcgtggctcagtggtagagcccctgcctagaatccc
ccaatgaggggctgggggcgtggctcagtggtagagcccctgcctagaat
cctccagtgacatggttcaatgacaatacttgcctaaaatgccccaatga
gtattctaggatttaactagcatgcacaaagtactgagtttcatctccag
aactgaaagagataaacaataaattaactagccttctaacttcttttggg
ttagcctcagaatggaagttggtttaggtcaacggatgtgtttcatttct
gtgtatctagaaattgtgcatcctggtggatcttcccacggtcttaaccc
agtttccataggctccgagtctggctttcctttcataagccgtaagtgaa
cattgcttcccttttgaaaatgtgtaaagtcgattttaaaaagatgtcaa
tgggtttctttttagatttattttattctaaaccactttatgtgcattta
gtgtccaggggtatgtgagtgtgtcattgcaggtgccggaggagggccag
aagagggagtcctgagtccctggaactggagttgagatgtgcgttaaagg
atccggagctgccatgtaggcgctgggaactaaacccagttctttctgca
gagcagtgaattgctcgcaacccccaagccatctctccagatctcacggg
tgttggttaagattggattcgtttttcattttatg
gaattcactagttggaggttagcttgggaaacacaggatgtttcagatta
gcctggactatcaaaaatggggactgggaagctgagaagaggaatttatg
ggtaaaaacttgtgtcaacaagcatgaggacccgccttttatatttcagt
ttaagtctgctgaagctgtgaagctgaggtgaggggccagcactctaggc
tcagtaccgtgagaaggcaggcagagaccagaaacagtctgctggggcaa
ttagcttagcatacacagtagacagcaagagaccacttacaaatggtgaa
aggtggggctagagagacagttaggtggtaaagaacactcagggctcttc
cagaggtccttggttcagtccccatcacccacaaggcactttacgacaac
ctgtatcccctgctctaggtgatctggggctctcttctggcctctgcagg
caccagaaatgcacgcggtacacttaaacacatacaagcaaaatacccat
acacagaaaaaaatatatattttttaagatgaaagattagggacaacacc
agaggctgtcccctggcacctctccctcctctcccgcctcctccctcccc
tctgagattctggggcagagccttttaatgtttcatgttctcaggtcacc
atgtaggatggccatgggctcactgcgctgctcacaataagactgaactc
ctgaagtagtgcttcctgtcttcggagtctgagcattacaagtcccagct
actatttgcccttgatttgtttatggagaggggacccatggttctctgca
tcctagggaatcactctatcctctaagctcaggggttacatcatccttgt
gtcttcctttcagaaaggctccattacatttctagtgtgctagaggttag
aggacaatcgtacagcacttgtcctccttctgcttgttgtagggatggaa
ttcaggtcatcaagcttagagcaatgcccttgacctgatgggtcatcctt
cataatgacaagctcacctctgtgcttctctaggagactcattgttgaag
gaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_144343263_144344290
seq2: B6Ng01-076P04.b_46_1080

seq1  GAATTCCAGGACAGCCAGGACGACACAGAGAAACCCTCTTTTGAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGACGACACAGAGAAACCCTCTTTTGAAAAAAA  50

seq1  AAAAAAAAAAGGAGGAGGGGAGAAGTAGCTTTGCTGGGTGTGGTGGTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAGGAGGAGGGGAGAAGTAGCTTTGCTGGGTGTGGTGGTGCA  100

seq1  TGCCTGTAGCCTTAGTGCTAAGGAGTCTGAGGGAGGAGGTTCTTGGCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTAGCCTTAGTGCTAAGGAGTCTGAGGGAGGAGGTTCTTGGCTTA  150

seq1  GAGATGTTCAAGCAACATAGTAAACTCAAGGTCAGCTTGTACTCTGAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTTCAAGCAACATAGTAAACTCAAGGTCAGCTTGTACTCTGAGAC  200

seq1  TCTGTATCACACAAAACCAAAAACAAGCAAAAAAAAAAAATGGGGGGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATCACACAAAACCAAAAACAAGCAAAAAAAAAAAATGGGGGGGGG  250

seq1  GCATGTTGTAGGCATAATTCTGTGGTAGAGCACCTGCCTAGAATCCCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTGTAGGCATAATTCTGTGGTAGAGCACCTGCCTAGAATCCCCCA  300

seq1  GTGAGGGGCTGGGGGCGTGGCTCAGTGGTAGAGCCCCTGCCTAGAATCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGGCTGGGGGCGTGGCTCAGTGGTAGAGCCCCTGCCTAGAATCCC  350

seq1  CCAATGAGGGGCTGGGGGCGTGGCTCAGTGGTAGAGCCCCTGCCTAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGAGGGGCTGGGGGCGTGGCTCAGTGGTAGAGCCCCTGCCTAGAAT  400

seq1  CCTCCAGTGACATGGTTCAATGACAATACTTGCCTAAAATGCCCCAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGTGACATGGTTCAATGACAATACTTGCCTAAAATGCCCCAATGA  450

seq1  GTATTCTAGGATTTAACTAGCATGCACAAAGTACTGAGTTTCATCTCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTAGGATTTAACTAGCATGCACAAAGTACTGAGTTTCATCTCCAG  500

seq1  AACTGAAAGAGATAAACAATAAATTAACTAGCCTTCTAACTTCTTTTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAAGAGATAAACAATAAATTAACTAGCCTTCTAACTTCTTTTGGG  550

seq1  TTAGCCTCAGAATGGAAGTTGGTTTAGGTCAACGGATGTGTTTCATTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCTCAGAATGGAAGTTGGTTTAGGTCAACGGATGTGTTTCATTTCT  600

seq1  GTGTATCTAGAAATTGTGCATCCTGGTGGATCTTCCCACGGTCTTAACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATCTAGAAATTGTGCATCCTGGTGGATCTTCCCACGGTCTTAACCC  650

seq1  AGTTTCCATAGGCTCCGAGTCTGGCTTTCCTTTCATAAGCCGTAAGTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCATAGGCTCCGAGTCTGGCTTTCCTTTCATAAGCCGTAAGTGAA  700

seq1  CATTGCTTCCCTTTTGAAAATGTGTAAAGTCGATTTTAAAAAGATGTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTTCCCTTTTGAAAATGTGTAAAGTCGATTTTAAAAAGATGTCAA  750

seq1  TGGGTTTCTTTTTAGATTTATTTTATTCTAAACCAC-TTATGTGCA-TTA  798
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  TGGGTTTCTTTTTAGATTTATTTTATTCTAAACCACTTTATGTGCATTTA  800

seq1  GTGTCCAGGGGTATGTGAGTGTGTCATTGCAGGTGCCGGAGGA-GGCCAG  847
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTGTCCAGGGGTATGTGAGTGTGTCATTGCAGGTGCCGGAGGAGGGCCAG  850

seq1  AAGAGGGAGT-CTGAGTCCCTGGAACTGGAGTTGAGATG-GCGTT-AAGG  894
      |||||||||| |||||||||||||||||||||||||||| ||||| ||||
seq2  AAGAGGGAGTCCTGAGTCCCTGGAACTGGAGTTGAGATGTGCGTTAAAGG  900

seq1  ATCCGGAGCTGCCATGTAGGCGCTGGGAACCAAACCCAGTTC-TTCTGCA  943
      |||||||||||||||||||||||||||||| ||||||||||| |||||| 
seq2  ATCCGGAGCTGCCATGTAGGCGCTGGGAACTAAACCCAGTTCTTTCTGC-  949

seq1  AGAGCAGTGAA-TGCTCGCAACCCCCAAGCCATCTCTCCAGATCCTCAC-  991
      ||||||||||| ||||||||||||||||||||||||||||||| ||||| 
seq2  AGAGCAGTGAATTGCTCGCAACCCCCAAGCCATCTCTCCAGAT-CTCACG  998

seq1  GGTGTTTGTTAAAGATTTGATTCG-TTTTCATTTTATG  1028
      |||||| ||| |||||| |||||| |||||||||||||
seq2  GGTGTTGGTT-AAGATTGGATTCGTTTTTCATTTTATG  1035

seq1: chr5_144497462_144498181
seq2: B6Ng01-076P04.g_401_1122 (reverse)

seq1  CTGCCTTCACCAATGAGTCTCCTAGAGAAGCACAGAGGTGAGCTTGTCAT  50
      || |||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCAACAATGAGTCTCCTAGAGAAGCACAGAGGTGAGCTTGTCAT  50

seq1  TATGAAGGATGACCCATCAGGTCAAGGGCATTGCTCTAAGCTTGATGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGGATGACCCATCAGGTCAAGGGCATTGCTCTAAGCTTGATGACC  100

seq1  TGAATTCCATCCCTACAAC-AGCAGAAGGA-GACAAGTGCTGTACGATTG  148
      ||||||||||||||||||| |||||||||| |||||||||||||||||||
seq2  TGAATTCCATCCCTACAACAAGCAGAAGGAGGACAAGTGCTGTACGATTG  150

seq1  TCCTCTAACCTCTAGCACACTAGAAATGTAATGGAGCCTTTCTGAAAGGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTAACCTCTAGCACACTAGAAATGTAATGGAGCCTTTCTGAAAGGA  200

seq1  AGACACAAGGATGATGTAACCCCTGAGCTTAGAGGATAGAGTGATTCCCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAAGGATGATGTAACCCCTGAGCTTAGAGGATAGAGTGATTCCCT  250

seq1  AGGATGCAGAGAACCATGGGTCCCCTCTCCATAAACAAATCAAGGGCAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCAGAGAACCATGGGTCCCCTCTCCATAAACAAATCAAGGGCAAA  300

seq1  TAGTAGCTGGGACTTGTAATGCTCAGACTCCGAAGACAGGAAGCACTACT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGCTGGGACTTGTAATGCTCAGACTCCGAAGACAGGAAGCACTACT  350

seq1  TCAGGAGTTCAGTCTTATTGTGAGCAGCGCAGTGAGCCCATGGCCATCCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGTTCAGTCTTATTGTGAGCAGCGCAGTGAGCCCATGGCCATCCT  400

seq1  ACATGGTGACCTGAGAACATGAAACATTAAAAGGCTCTGCCCCAGAATCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTGACCTGAGAACATGAAACATTAAAAGGCTCTGCCCCAGAATCT  450

seq1  CAGAGGGGAGGGAGGAGGCGGGAGAGGAGGGAGAGGTGCCAGGGGACAGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGGAGGGAGGAGGCGGGAGAGGAGGGAGAGGTGCCAGGGGACAGC  500

seq1  CTCTGGTGTTGTCCCTAATCTTTCATCTTAAAAAATATATATTTTTTTCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTGTTGTCCCTAATCTTTCATCTTAAAAAATATATATTTTTTTCT  550

seq1  GTGTATGGGTATTTTGCTTGTATGTGTTTAAGTGTACCGCGTGCATTTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGGGTATTTTGCTTGTATGTGTTTAAGTGTACCGCGTGCATTTCT  600

seq1  GGTGCCTGCAGAGGCCAGAAGAGAGCCCCAGATCACCTAGAGCAGGGGAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCTGCAGAGGCCAGAAGAGAGCCCCAGATCACCTAGAGCAGGGGAT  650

seq1  ACAGGTTGTCGTAAAGTGCCTTGTGGGTGATGGGGACTGAACCAAGGACC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTGTCGTAAAGTGCCTTGTGGGTGATGGGGACTGAACCAAGGACC  700

seq1  TCTGGAAGAGCCCTGAGTGTTC  720
      ||||||||||||||||||||||
seq2  TCTGGAAGAGCCCTGAGTGTTC  722