BAC Information

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BAC

Clone NameB6Ng01-077A11
Chromosome5 (Build37)
Map Location 55,839,265 - 55,950,548
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666377, LOC666380
Downstream geneEG666405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077A11.bB6Ng01-077A11.g
ACCDH893112DH893113
length8511,179
definitionDH893112|Mus musculus domesticus DNA, BAC clone: B6Ng01-077A11, 5' end.DH893113|Mus musculus domesticus DNA, BAC clone: B6Ng01-077A11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,839,265 - 55,840,110)(55,949,349 - 55,950,548)
sequence
gaattctcagcaaaatttcattatacttatacagctcacagacaaacata
gggaatgtgccatacaggagagcctgggtcaaatgacaatgtagacaact
cccaaaaggaatatctggaagatctccattgatcttcagttgagattctt
cacaggtgaataggggtgtgacaatttgttgttgagaaatatctgtcata
gaaattaaacagccttttgaacatagtaggcctttaaatttgtttaaaaa
actaatatatatatatatatatatgtatgtatgtatgtatatatatatat
atatatatcactccagtcaatatgttacttccatttttatgtatatgatt
tcaggactgacatttggtatcagataaccaattctggggctcattccaga
gaaagactatttcctctcttctcagtattctttagttgtttgcatttctt
tgtgtatggttgggacctattgaaatttcccctattaccttagagtatca
attcttttcatctttgtccaaattttgcttagtcactaatgacagccatg
agattgtgtctcttagaaataccataaaagctataccaatgagctctcaa
tttccagagattcatgagtatattttgcttcttatgaatatatttttcat
atttagaaattatagttttcttttttcacattttttgtcctcacatgaca
gattactactatcattttaaaattgttttttggccaggattgcttttatg
atcatcctttcccttaatccagaaactagaacctattttcctattcaaat
actaatcatcatattgacttttttgggattttacattaatctaagcattc
a
gaattctctaattcgttagagcacaaatatcatttctcatttttttccac
cttctgttgtttttaacattttggcccaggccttgttacagactctactt
taggggctccctccttcattgctctcattaaaactattgacttatagatt
cagaaaaagaaacaaatattacttagctctgtctttttttttccttttac
tagaatctgtaatacaaaacaagcaagtaaaaatatctttagaaaattgc
tgtgcatgcatgtgcatttaactagctacatgggtatgtaaatatatata
tgcattatagttttatatatatgcattcagattactaatattaagcttaa
taacatgtattttggcagttagaaattggtggcatctaaaataacattca
tctatttcattaaataatctaataaaatatatttcaagtagtctgttcaa
aaaacttattaccaggcaagactgaaactcttcaaggtgcaaaggaaata
taattgaagtaggattataaataagtaatagcacaaaataaaattggaaa
aaattaaaattcatactatattaacagaaagagtttttaaaggctgacat
agaaatctcctttaccttagacatatgaaatatatccaatttatattcat
tatattataattaaaattttgtaatttacataatatgttgcttaaattta
aagacatatacttgttttctaaaaattacattaactttatacaaacacag
tctggtcatggagtaaccactcttctgaatgactcctgaattagtaatga
gttttcaatggagatattccattaggtgtgtgaaataccagctgaattgc
atttatattgtgtatattactcaagggaacagaaatcactacctgtcaca
gaggatgaagaattcaagatgttgtcagtgatactttcctgatttaatga
cagtgtcactgtgggatttcttgctcaaattggaatattttggatgctat
cttaggaagactttaattcaaaatatttcatttattctcaattatttact
tcctgcagattatattattacagtgtgtatgtataactaccacattacta
ccatatagctcacctccctcttttcttgggagctgggatatcgtgttata
ctggctttatttacggatctctttggcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_55839265_55840110
seq2: B6Ng01-077A11.b_45_895

seq1  GAATTCTCAGCAAAATTTCATTATACTTATACAGCTCACAGACAAACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCAAAATTTCATTATACTTATACAGCTCACAGACAAACATA  50

seq1  GGGAATGTGCCATACAGGAGAGCCTGGGTCAAATGACAATGTAGACAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGTGCCATACAGGAGAGCCTGGGTCAAATGACAATGTAGACAACT  100

seq1  CCCAAAAGGAATATCTGGAAGATCTCCATTGATCTTCAGTTGAGATTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAAGGAATATCTGGAAGATCTCCATTGATCTTCAGTTGAGATTCTT  150

seq1  CACAGGTGAATAGGGGTGTGACAATTTGTTGTTGAGAAATATCTGTCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTGAATAGGGGTGTGACAATTTGTTGTTGAGAAATATCTGTCATA  200

seq1  GAAATTAAACAGCCTTTTGAACATAGTAGGCCTTTAAATTTGTTTAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAAACAGCCTTTTGAACATAGTAGGCCTTTAAATTTGTTTAAAAA  250

seq1  ACTAATATATATATATATATATATGTATGTATGTATGTATATATATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATATATATATATATATATATGTATGTATGTATGTATATATATATAT  300

seq1  ATATATATCACTCCAGTCAATATGTTACTTCCATTTTTATGTATATGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATCACTCCAGTCAATATGTTACTTCCATTTTTATGTATATGATT  350

seq1  TCAGGACTGACATTTGGTATCAGATAACCAATTCTGGGGCTCATTCCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACTGACATTTGGTATCAGATAACCAATTCTGGGGCTCATTCCAGA  400

seq1  GAAAGACTATTTCCTCTCTTCTCAGTATTCTTTAGTTGTTTGCATTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACTATTTCCTCTCTTCTCAGTATTCTTTAGTTGTTTGCATTTCTT  450

seq1  TGTGTATGGTTGGGACCTATTGAAATTTCCCCTATTACCTTAGAGTATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGGTTGGGACCTATTGAAATTTCCCCTATTACCTTAGAGTATCA  500

seq1  ATTCTTTTCATCTTTGTCCAAATTTTGCTTAGTCACTAATGACAGCCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTCATCTTTGTCCAAATTTTGCTTAGTCACTAATGACAGCCATG  550

seq1  AGATTGTGTCTCTTAGAAATACCATAAAAGCTATACCAATGAGCTCTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTGTCTCTTAGAAATACCATAAAAGCTATACCAATGAGCTCTCAA  600

seq1  TTTCCAGAGATTCATGAGTATATTTTGCTTCTTATGAATATATTTTTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGAGATTCATGAGTATATTTTGCTTCTTATGAATATATTTTTCAT  650

seq1  ATTTAGAAATTATAGTTT--CTTTTTCACATTTTTTGTCCTCACATGACA  698
      ||||||||||||||||||   |||||||||||||||||||||||||||||
seq2  ATTTAGAAATTATAGTTTTCTTTTTTCACATTTTTTGTCCTCACATGACA  700

seq1  GATTACTACTATCA-TTTAAAATTG-TTTTTGGCCAGGATTGC-TTTATG  745
      |||||||||||||| |||||||||| ||||||||||||||||| ||||||
seq2  GATTACTACTATCATTTTAAAATTGTTTTTTGGCCAGGATTGCTTTTATG  750

seq1  ATCATCCTTTCCC-TAATCCAGAAACTAGAACCTATTTTCTATTTCAAAT  794
      ||||||||||||| ||||||||||||||||||||||||||   |||||||
seq2  ATCATCCTTTCCCTTAATCCAGAAACTAGAACCTATTTTCCTATTCAAAT  800

seq1  ACTAATCATCATATTGACATTTTTGGAATACTTACAATAATCTAAGCATT  844
      |||||||||||||||||| ||||||| ||  ||||| |||||||||||||
seq2  ACTAATCATCATATTGACTTTTTTGGGAT-TTTACATTAATCTAAGCATT  849

seq1  CA  846
      ||
seq2  CA  851

seq1: chr5_55949349_55950548
seq2: B6Ng01-077A11.g_70_1248 (reverse)

seq1  TTGCCAAAGAGGATACTGTTAAAATAAAAGCCAGTATTAACAGATTATTC  50
      |||||||||| ||| | ||  |||| |||||||||| |||||   || ||
seq2  TTGCCAAAGA-GAT-CCGT--AAAT-AAAGCCAGTA-TAACACGATA-TC  43

seq1  CCAGACTCCCATAGAAAAGAGGGAGGTGAGCTATAATTGGTATGTATATG  100
      |||| |||||| |||||||||||||||||||||||  ||||| ||| |||
seq2  CCAG-CTCCCA-AGAAAAGAGGGAGGTGAGCTATA--TGGTA-GTA-ATG  87

seq1  T-GTATGTATAATAACATACACAACTGTAATTAATATAAATCTGCAGGAA  149
      | |||  |||    |||||||| ||||||| |||||| ||||||||||||
seq2  TGGTAGTTAT----ACATACAC-ACTGTAA-TAATAT-AATCTGCAGGAA  130

seq1  GT-AATAATTGAGAATAAATGGAATATTTTGAATTAAAGTCTTTCCTAAG  198
      || |||||||||||||||||| ||||||||||||||||||| ||||||||
seq2  GTAAATAATTGAGAATAAATGAAATATTTTGAATTAAAGTC-TTCCTAAG  179

seq1  ATAGCATCCAAAATTATTCCAATTTGAGCAAGATATCCCACAGTGACAAC  248
      ||||||||||||| ||||||||||||||||||| ||||||||||||| ||
seq2  ATAGCATCCAAAA-TATTCCAATTTGAGCAAGAAATCCCACAGTGAC-AC  227

seq1  TGTCATTAAATCAGGAAAGTATCACTGACAACATCTTGAATTCTTCATCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTAAATCAGGAAAGTATCACTGACAACATCTTGAATTCTTCATCC  277

seq1  TCTGTGACAGGTAGTGATTTCTGTTCCCTTGAGTAATATACACAATATAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGACAGGTAGTGATTTCTGTTCCCTTGAGTAATATACACAATATAA  327

seq1  ATGCAATTCAGCTGGTATTTCACACACCTAATGGAATATCTCCATTGAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATTCAGCTGGTATTTCACACACCTAATGGAATATCTCCATTGAAA  377

seq1  ACTCATTACTAATTCAGGAGTCATTCAGAAGAGTGGTTACTCCATGACCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTACTAATTCAGGAGTCATTCAGAAGAGTGGTTACTCCATGACCA  427

seq1  GACTGTGTTTGTATAAAGTTAATGTAATTTTTAGAAAACAAGTATATGTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGTTTGTATAAAGTTAATGTAATTTTTAGAAAACAAGTATATGTC  477

seq1  TTTAAATTTAAGCAACATATTATGTAAATTACAAAATTTTAATTATAATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTTAAGCAACATATTATGTAAATTACAAAATTTTAATTATAATA  527

seq1  TAATGAATATAAATTGGATATATTTCATATGTCTAAGGTAAAGGAGATTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAATATAAATTGGATATATTTCATATGTCTAAGGTAAAGGAGATTT  577

seq1  CTATGTCAGCCTTTAAAAACTCTTTCTGTTAATATAGTATGAATTTTAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTCAGCCTTTAAAAACTCTTTCTGTTAATATAGTATGAATTTTAAT  627

seq1  TTTTTCCAATTTTATTTTGTGCTATTACTTATTTATAATCCTACTTCAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCAATTTTATTTTGTGCTATTACTTATTTATAATCCTACTTCAAT  677

seq1  TATATTTCCTTTGCACCTTGAAGAGTTTCAGTCTTGCCTGGTAATAAGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTCCTTTGCACCTTGAAGAGTTTCAGTCTTGCCTGGTAATAAGTT  727

seq1  TTTTGAACAGACTACTTGAAATATATTTTATTAGATTATTTAATGAAATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAACAGACTACTTGAAATATATTTTATTAGATTATTTAATGAAATA  777

seq1  GATGAATGTTATTTTAGATGCCACCAATTTCTAACTGCCAAAATACATGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATGTTATTTTAGATGCCACCAATTTCTAACTGCCAAAATACATGT  827

seq1  TATTAAGCTTAATATTAGTAATCTGAATGCATATATATAAAACTATAATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGCTTAATATTAGTAATCTGAATGCATATATATAAAACTATAATG  877

seq1  CATATATATATTTACATACCCATGTAGCTAGTTAAATGCACATGCATGCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATATATTTACATACCCATGTAGCTAGTTAAATGCACATGCATGCA  927

seq1  CAGCAATTTTCTAAAGATATTTTTACTTGCTTGTTTTGTATTACAGATTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATTTTCTAAAGATATTTTTACTTGCTTGTTTTGTATTACAGATTC  977

seq1  TAGTAAAAGGAAAAAAAAAGACAGAGCTAAGTAATATTTGTTTCTTTTTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAAGGAAAAAAAAAGACAGAGCTAAGTAATATTTGTTTCTTTTTC  1027

seq1  TGAATCTATAAGTCAATAGTTTTAATGAGAGCAATGAAGGAGGGAGCCCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTATAAGTCAATAGTTTTAATGAGAGCAATGAAGGAGGGAGCCCC  1077

seq1  TAAAGTAGAGTCTGTAACAAGGCCTGGGCCAAAATGTTAAAAACAACAGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTAGAGTCTGTAACAAGGCCTGGGCCAAAATGTTAAAAACAACAGA  1127

seq1  AGGTGGAAAAAAATGAGAAATGATATTTGTGCTCTAACGAATTAGAGAAT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAAAAAAATGAGAAATGATATTTGTGCTCTAACGAATTAGAGAAT  1177

seq1  TC  1200
      ||
seq2  TC  1179