BAC Information

Click to search

BAC

Clone NameB6Ng01-077B18
Chromosome5 (Build37)
Map Location 61,437,145 - 61,566,215
singlet/doubletdoublet
Overlap geneLOC666597
Upstream geneCbfa2t2-ps1, LOC100041498
Downstream geneEG666610, LOC100041524, G6pd2, LOC100041543
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077B18.bB6Ng01-077B18.g
ACCDH893171DH893172
length1,1811,091
definitionDH893171|Mus musculus domesticus DNA, BAC clone: B6Ng01-077B18, 5' end.DH893172|Mus musculus domesticus DNA, BAC clone: B6Ng01-077B18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,565,034 - 61,566,215)(61,437,145 - 61,438,240)
sequence
gaattcctaagttataagttgaaaaaatatgaaattcaagaagaataaag
acaaaagtatggtcactttaccccttcatataattgtgaacaaaacaccc
atgcaaggagttacagagacaaagtttggagctgagacgaaaggatggac
catctagagactccctttaaaaaatttaaatgtgctgtcatctaggttat
tctgatcctgaaccaaatgaaagcaagctcacgtgatcatacaacagtcc
tttccatttactcagttggtttctgagtcataagattcagttgataaaca
tgaagtgataaaacaaaactaagcatacgcaggacatcactaacttttct
aagacggattatgtgcaaatcaaataaaaatactttgaaacattttccca
agagttataaattaatataggttgcatgctcttaggacactgactgcact
aaacctctcctgctttttattccgtgttggctttttttcgatgtattatt
catagaaaaatatttacccaattccttacctattttcttatataataata
aatgtaaacttcataattcattagtggtaagttactatttttaacgtgtt
tacatatgagatcttttattatctttcctcatttttctcctcaatattta
aactaaattaatcctagaattttagcattgtatgctgatgattttcaaaa
attagtagtttgtgaaatatcctagattcatgaatgagcaaagtcatatt
ttactataagctttctcctataactggtaagtaaggcttcaacctaattt
tccttcttaaaatttcaccttgaattatttatgaaaaatgttaaaagtgt
catatttaacaaaatattcttttgtgctttccaaagtgcctaaaggtaat
agtagatcattggttggtactactttattcagaatggactttgcaggcta
ctataagcatcatctctacattattgtttatggctgtcatgacagagtat
aaagaaaaatggtgataactattaagtatcagttgcatgccagagtcatt
atacccattcctcatcctgctgtcgatgtgggcatttttcattatgctgt
aaaggataacaaaggacctggggaataagacactctcttgatatttcaag
tcatgggtctgtgagcttctgaatatctggc
gaattctctttggatgaccccgaactaataatgatgtccctctgcttaga
aaggatcatctaacttggagaatcacagtgacaacattggtgtcaatttc
tgtacacacacacacacacacacacacacacacacacacacacatatata
tatatatatatatatatatatcttacagttatactgaattaaaaagtatc
atggcctgcacatgaaacaaactaacactggcaaagcaaaattattctgt
gttcagagaatttcagagatttttgtcatagagaaattgaaacttttaga
aaatagaaaatgaagttacaagtcatctttaataattttaagtcatacta
catactaggtcttggattattaaaaataataatgatttaaacttcttaca
aaaatatgcctcaatgttcatttaaatttttatctttgcgagtttcatta
ttcttagtagtagaaaattttaaattttgtattgttaaaacacagtaata
acactaaataaacaaagctgtatattgtgaaaatattaagcataaaagat
tggacatactaaattaatcccttaagttttccaaagattttaacaaagaa
ttgaaaaacacatattctgatataataataactcagattacattgtttaa
aactgtgctgtataaagttaatgtcaatagagtgattctatctaaaacaa
acaaacacatctcaacagtagtgagtttctacttgattcttctaaaaacg
tctttaatgaagttattcttcccttactgacctctatcccaccctatttt
agcattaatattctatattccattattcccctctaccctgctttacccac
tgtgttctatcacccttcttataaaaagccagccacccatgaatcatatc
actttcccatatttatgggtattctccatacactactaaaatgtattatg
ctaggcatgggttagccctttggaagtgctaggctatgagttccataaac
accccttctgagtatacaaattattgtcattgtttttagttaccaccaag
aacttgatgtaagactatattgccttacacagccaatattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_61565034_61566215
seq2: B6Ng01-077B18.b_44_1224 (reverse)

seq1  GCCAGATATTCAAAAAGCTCACAGACTCCATGACCTTGAATATCAGGAGT  50
      ||||||||||| | |||||||||||| ||||||| |  ||||||| ||| 
seq2  GCCAGATATTC-AGAAGCTCACAGAC-CCATGACTTGAAATATCAAGAGA  48

seq1  G---CTTACT-CCCAGGTTCTTTGTCATCATCTACAGCATAATG-AAAAT  95
      |   |||| | ||||||| |||||| ||| | |||||||||||| |||||
seq2  GTGTCTTATTCCCCAGGTCCTTTGTTATCCTTTACAGCATAATGAAAAAT  98

seq1  GCCCACATTCGACAGCAGGATGAGGAATGGGTATAATGACTCTGGCATGC  145
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACA-TCGACAGCAGGATGAGGAATGGGTATAATGACTCTGGCATGC  147

seq1  AACTGATACTTAATAGTTATCACCATTTTTCTTTATTACTCTTGTCATGA  195
      ||||||||||||||||||||||||||||||||||| ||||| ||||||||
seq2  AACTGATACTTAATAGTTATCACCATTTTTCTTTA-TACTC-TGTCATGA  195

seq1  CAGCCATAAACAATAATGTAGAGATGATGCTTATAGTAGCCTGCAAAGTC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATAAACAATAATGTAGAGATGATGCTTATAGTAGCCTGCAAAGTC  245

seq1  CATTCCTGAATAAAGTAGTACCAACCAATGATCTACTATTACCTTTAGGC  295
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CATT-CTGAATAAAGTAGTACCAACCAATGATCTACTATTACCTTTAGGC  294

seq1  ACTTTGGAAAGCACAAAAGAATATTTTGTTAAATATGACACTTTTAACAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGAAAGCACAAAAGAATATTTTGTTAAATATGACACTTTTAACAT  344

seq1  TTTTCATAAATAATTCAAGGTGAAATTTTAAGAAGGAAAATTAGGTTGAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATAAATAATTCAAGGTGAAATTTTAAGAAGGAAAATTAGGTTGAA  394

seq1  GCCTTACTTACCAGTTATAGGAGAAAGCTTATAGTAAAATATGACTTTGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTACTTACCAGTTATAGGAGAAAGCTTATAGTAAAATATGACTTTGC  444

seq1  TCATTCATGAATCTAGGATATTTCACAAACTACTAATTTTTGAAAATCAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATGAATCTAGGATATTTCACAAACTACTAATTTTTGAAAATCAT  494

seq1  CAGCATACAATGCTAAAATTCTAGGATTAATTTAGTTTAAATATTGAGGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATACAATGCTAAAATTCTAGGATTAATTTAGTTTAAATATTGAGGA  544

seq1  GAAAAATGAGGAAAGATAATAAAAGATCTCATATGTAAACACGTTAAAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGAGGAAAGATAATAAAAGATCTCATATGTAAACACGTTAAAAA  594

seq1  TAGTAACTTACCACTAATGAATTATGAAGTTTACATTTATTATTATATAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAACTTACCACTAATGAATTATGAAGTTTACATTTATTATTATATAA  644

seq1  GAAAATAGGTAAGGAATTGGGTAAATATTTTTCTATGAATAATACATCGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAGGTAAGGAATTGGGTAAATATTTTTCTATGAATAATACATCGA  694

seq1  AAAAAAGCCAACACGGAATAAAAAGCAGGAGAGGTTTAGTGCAGTCAGTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGCCAACACGGAATAAAAAGCAGGAGAGGTTTAGTGCAGTCAGTG  744

seq1  TCCTAAGAGCATGCAACCTATATTAATTTATAACTCTTGGGAAAATGTTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGAGCATGCAACCTATATTAATTTATAACTCTTGGGAAAATGTTT  794

seq1  CAAAGTATTTTTATTTGATTTGCACATAATCCGTCTTAGAAAAGTTAGTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTATTTTTATTTGATTTGCACATAATCCGTCTTAGAAAAGTTAGTG  844

seq1  ATGTCCTGCGTATGCTTAGTTTTGTTTTATCACTTCATGTTTATCAACTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTGCGTATGCTTAGTTTTGTTTTATCACTTCATGTTTATCAACTG  894

seq1  AATCTTATGACTCAGAAACCAACTGAGTAAATGGAAAGGACTGTTGTATG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTATGACTCAGAAACCAACTGAGTAAATGGAAAGGACTGTTGTATG  944

seq1  ATCACGTGAGCTTGCTTTCATTTGGTTCAGGATCAGAATAACCTAGATGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACGTGAGCTTGCTTTCATTTGGTTCAGGATCAGAATAACCTAGATGA  994

seq1  CAGCACATTTAAATTTTTTAAAGGGAGTCTCTAGATGGTCCATCCTTTCG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACATTTAAATTTTTTAAAGGGAGTCTCTAGATGGTCCATCCTTTCG  1044

seq1  TCTCAGCTCCAAACTTTGTCTCTGTAACTCCTTGCATGGGTGTTTTGTTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCTCCAAACTTTGTCTCTGTAACTCCTTGCATGGGTGTTTTGTTC  1094

seq1  ACAATTATATGAAGGGGTAAAGTGACCATACTTTTGTCTTTATTCTTCTT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTATATGAAGGGGTAAAGTGACCATACTTTTGTCTTTATTCTTCTT  1144

seq1  GAATTTCATATTTTTTCAACTTATAACTTAGGAATTC  1182
      |||||||||||||||||||||||||||||||||||||
seq2  GAATTTCATATTTTTTCAACTTATAACTTAGGAATTC  1181

seq1: chr5_61437145_61438240
seq2: B6Ng01-077B18.g_66_1156

seq1  GAATTCTCTTTGGATGACCCCGAACTAATAATGATGTCCCTCTGCTTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTGGATGACCCCGAACTAATAATGATGTCCCTCTGCTTAGA  50

seq1  AAGGATCATCTAACTTGGAGAATCACAGTGACAACATTGGTGTCAATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATCATCTAACTTGGAGAATCACAGTGACAACATTGGTGTCAATTTC  100

seq1  TGTACACACACACACACACACACACACACACACACACACACACATATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACACACACACACACACACACACACACACACACACACACATATATA  150

seq1  TATATATATATATATATATATCTTACAGTTATACTGAATTAAAAAGTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATCTTACAGTTATACTGAATTAAAAAGTATC  200

seq1  ATGGCCTGCACATGAAACAAACTAACACTGGCAAAGCAAAATTATTCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTGCACATGAAACAAACTAACACTGGCAAAGCAAAATTATTCTGT  250

seq1  GTTCAGAGAATTTCAGAGATTTTTGTCATAGAGAAATTGAAACTTTTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAGAATTTCAGAGATTTTTGTCATAGAGAAATTGAAACTTTTAGA  300

seq1  AAATAGAAAATGAAGTTACAAGTCATCTTTAATAATTTTAAGTCATACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAAAATGAAGTTACAAGTCATCTTTAATAATTTTAAGTCATACTA  350

seq1  CATACTAGGTCTTGGATTATTAAAAATAATAATGATTTAAACTTCTTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTAGGTCTTGGATTATTAAAAATAATAATGATTTAAACTTCTTACA  400

seq1  AAAATATGCCTCAATGTTCATTTAAATTTTTATCTTTGCGAGTTTCATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGCCTCAATGTTCATTTAAATTTTTATCTTTGCGAGTTTCATTA  450

seq1  TTCTTAGTAGTAGAAAATTTTAAATTTTGTATTGTTAAAACACAGTAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGTAGTAGAAAATTTTAAATTTTGTATTGTTAAAACACAGTAATA  500

seq1  ACACTAAATAAACAAAGCTGTATATTGTGAAAATATTAAGCATAAAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAAATAAACAAAGCTGTATATTGTGAAAATATTAAGCATAAAAGAT  550

seq1  TGGACATACTAAATTAATCCCTTAAGTTTTCCAAAGATTTTAACAAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATACTAAATTAATCCCTTAAGTTTTCCAAAGATTTTAACAAAGAA  600

seq1  TTGAAAAACACATATTCTGATATAATAATAACTCAGATTACATTGTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAACACATATTCTGATATAATAATAACTCAGATTACATTGTTTAA  650

seq1  AACTGTGCTGTATAAAGTTAATGTCAATAGAGTGATTCTATCTAAAACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGCTGTATAAAGTTAATGTCAATAGAGTGATTCTATCTAAAACAA  700

seq1  ACAAACACATCTCAACAGTAGTGAGTTTCTACTTGATTCTTCTAAAAACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACATCTCAACAGTAGTGAGTTTCTACTTGATTCTTCTAAAAACG  750

seq1  TCTTTAATGAAGTTATTCTTCCCTTACTGACCTCTATCCCACCCTATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAATGAAGTTATTCTTCCCTTACTGACCTCTATCCCACCCTATTTT  800

seq1  AGCATTAATATTCTATATTCCATTATTCCCCTCTACCCTGCTTTACCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTAATATTCTATATTCCATTATTCCCCTCTACCCTGCTTTACCCAC  850

seq1  TGTGTTCTATCACCCTTCTTATAAAAAAGCCAGCCACCCATGAATCATAT  900
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTGTTCTATCACCCTTCTTAT-AAAAAGCCAGCCACCCATGAATCATAT  899

seq1  CACTTTCCCATATTTATGGGTATTCTCCATACACTACTAAAATGTATTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCCCATATTTATGGGTATTCTCCATACACTACTAAAATGTATTAT  949

seq1  GCTAGGCATGGGTTAGCCCTTTGGAAGTGCTAGGCTAATGAGGTTCCATA  1000
      |||||||||||||||||||||||||||||||||||| |||| ||||||||
seq2  GCTAGGCATGGGTTAGCCCTTTGGAAGTGCTAGGCT-ATGA-GTTCCATA  997

seq1  AACACCCCTTCTGAGTATTACAAATTATTGTCATTGTTTTTAGTTACCAC  1050
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AACACCCCTTCTGAGTA-TACAAATTATTGTCATTGTTTTTAGTTACCAC  1046

seq1  CAAGAACTTGATGTTAAGACTATATTGCTTAACACAGCCAATATTT  1096
      ||||||||||||| |||||||||||||| | |||||||||||||||
seq2  CAAGAACTTGATG-TAAGACTATATTGCCTTACACAGCCAATATTT  1091