BAC Information

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BAC

Clone NameB6Ng01-077D20
Chromosome10 (Build37)5 (Build37)
Map Location 21,694,861 - 21,695,927110,046,966 - 110,047,665
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAhi1, Myb, LOC100039870, Hbs1l, Aldh8a1, LOC100039906, 1700020N01Rik, EG432436, LOC100039936, LOC628133
Downstream geneSgk, LOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072, LOC100040078, Slc2a12, Tbpl1, Tcf21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077D20.bB6Ng01-077D20.g
ACCDH893269DH893270
length1,1641,098
definitionDH893269|Mus musculus domesticus DNA, BAC clone: B6Ng01-077D20, 5' end.DH893270|Mus musculus domesticus DNA, BAC clone: B6Ng01-077D20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(21,694,861 - 21,695,927)(110,046,966 - 110,047,665)
sequence
gaattccagaaggtgctatgcaggctgccaggggaggattctcagtaagt
cttactcagctgtggacgcgttgttcaaggtgagcctgctggtgcaatgt
gttagtcaggtttgttatgggggtaaccagctgttctttgattggatttg
gtcctgggtccataagaagaaactgacttctggtattataaacctagttg
aaagcctgtggcttgtgaggttatttggcctagtgagagagtttttatat
tttctaagtggacatgatatgcctcccaaattgccttctctataactgtg
tttgtggccatagagtgctactactattggcattggtcagagaggttctg
ttctgcagtgatcagcggtgactggtcaaggtacacatataaatgaatgt
tgaatgcccagctgtaatggggtgtctctaacatgcccttcacagtacag
ggaacactgttgaagagggggtggaaagaatggaaaaatctagagaagaa
tgtggggtggactgcagagtgcagacagcagctcccaagcactctgtagc
tatgacactctggggctcacaggtgtggcttcctgtgtgagccccacaca
ccgggagctgtcaacaccctatcacacacaggaggcggagcatacctcag
ccacaaaatcagttctcttatcaactctgattcagactactttgctttgt
agaagttgaaatttgaccaccgatgacctcaatatgacaatagccgctga
tagtcttgattgattaacttaatgcataacggggagtttttaacgctgac
aagtgaaaggctccttgcaaactcagtgttccctttgccaagtacaacaa
agcatcatgaaaagagaggggagggaaagatggacgtcttaagttagaat
caccaaggttttagctatctcccacttccctttaagattatccccagggt
attcagttcttaagagttcttttgcatatggcacaggcacactaaacgta
tgttggacaattaatttgggttagccttcatctaaacttgagtggagagt
gtgcttcattttgaagattttgtgagaaattatagaagggacagaggtgt
gttccacttttcatttgctgctccttatgcaatcaatttctattgactca
accgatccaaaaca
gaattctttgattagatagatctgtacctcattttctaattggataattt
tgtttgttggtgtctgttcttgagttcttcatatattttggctattagta
ctctgtcagatgtagagtgtgtaaaaatctttcctcattctgtaggctgc
tattttgtcctgttgacaatgacttgtgtgctgcagaagattttcagttt
catgaggtcccagttcttaattgttgatcttagtacctgagctgttggtg
ttctgttcagaaagttgtttcttatgggaggactactgatttttttcaat
ttatcttgtatccagccacttcactgaatgtgtttactagctgtaggggt
gccatggtagagtgcttggggtcacttatgtatactatcttatcatctgc
aaatagagatattttggcttcttcctttccaattttcatctcctttatct
ccttcagtctttttattgctctagctagaacttcaagttctattgacaga
tatatagagagtgagcagccttgatttattcctgatttcagtgaaattgc
tttgaatttctccccatttaatttgatgttgactatcagcctgctataaa
ttgccttcattatgttttagtatgtcccttttatccttgatttctccaac
actttcagcatgaaggggctttggactttttcaaagacttcttcagtatc
taataagatgaccatgtggtttttttttgcccttaacttcatttatgtga
tgtgttatattggcagacttttatatgttgaaacatccctacatctctgg
gatgaagcttacttgactatggtggatgatgtttttgatgtattcttgaa
ataaattgaaagtattttattgagtatttttgcatcaatgttcacaagga
aaattggtctgtaaagatactttgcatcatttaaaatgtttatagacttt
attttattatatttatagttgtactaacagatttttcaactgaaaatatc
aaaataaagagagaataagcgaaaggctattacttattacatgacacgaa
tgcgctaaatctgggcaaaaacatgctagaatgtttctaagaggtgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_21694861_21695927
seq2: B6Ng01-077D20.b_149_1212

seq1  GTTAGTCAGGTTTGTTATGGGGGTAACCAGCTGTTCTTTGATTGGATTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTCAGGTTTGTTATGGGGGTAACCAGCTGTTCTTTGATTGGATTTG  50

seq1  GTCCTGGGTCCATAAGAAGAAACTGACTTCTGGTATTATAAACCTAGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGGTCCATAAGAAGAAACTGACTTCTGGTATTATAAACCTAGTTG  100

seq1  AAAGCCTGTGGCTTGTGAGGTTATTTGGCCTAGTGAGAGAGTTTTTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTGTGGCTTGTGAGGTTATTTGGCCTAGTGAGAGAGTTTTTATAT  150

seq1  TTTCTAAGTGGACATGATATGCCTCCCAAATTGCCTTCTCTATAACTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAGTGGACATGATATGCCTCCCAAATTGCCTTCTCTATAACTGTG  200

seq1  TTTGTGGCCATAGAGTGCTACTACTATTGGCATTGGTCAGAGAGGTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGCCATAGAGTGCTACTACTATTGGCATTGGTCAGAGAGGTTCTG  250

seq1  TTCTGCAGTGATCAGCGGTGACTGGTCAAGGTACACATATAAATGAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCAGTGATCAGCGGTGACTGGTCAAGGTACACATATAAATGAATGT  300

seq1  TGAATGCCCAGCTGTAATGGGGTGTCTCTAACATGCCCTTCACAGTACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCCCAGCTGTAATGGGGTGTCTCTAACATGCCCTTCACAGTACAG  350

seq1  GGAACACTGTTGAAGAGGGGGTGGAAAGAATGGAAAAATCTAGAGAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACTGTTGAAGAGGGGGTGGAAAGAATGGAAAAATCTAGAGAAGAA  400

seq1  TGTGGGGTGGACTGCAGAGTGCAGACAGCAGCTCCCAAGCACTCTGTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGTGGACTGCAGAGTGCAGACAGCAGCTCCCAAGCACTCTGTAGC  450

seq1  TATGACACTCTGGGGCTCACAGGTGTGGCTTCCTGTGTGAGCCCCACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACACTCTGGGGCTCACAGGTGTGGCTTCCTGTGTGAGCCCCACACA  500

seq1  CCGGGAGCTGTCAACACCCTATCACACACAGGAGGCGGAGCATACCTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGAGCTGTCAACACCCTATCACACACAGGAGGCGGAGCATACCTCAG  550

seq1  CCACAAAATCAGTTCTCTTATCAACTCTGATTCAGACTACTTTGCTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAATCAGTTCTCTTATCAACTCTGATTCAGACTACTTTGCTTTGT  600

seq1  AGAAGTTGAAATTTGACCACCGATGACCTCAATATGACAATAGCCGCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTGAAATTTGACCACCGATGACCTCAATATGACAATAGCCGCTGA  650

seq1  TAGTCTTGATTGATTAACTTAATGCATAACGGGGAGTTTTTTAACGCTGA  700
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAGTCTTGATTGATTAACTTAATGCATAACGGGGAG-TTTTTAACGCTGA  699

seq1  CAAGTGAAAGGCTCCTTGCAAACTCAGTGTTCCCTTTGCCAAGTACAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGAAAGGCTCCTTGCAAACTCAGTGTTCCCTTTGCCAAGTACAACA  749

seq1  AAGCATCATGAAAAGAGAGGGGA-GGAAAGATGGACGTCTTAAGTTAGAA  799
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAGCATCATGAAAAGAGAGGGGAGGGAAAGATGGACGTCTTAAGTTAGAA  799

seq1  TCACCAAGTTTTTAGCTATCTCCCACTTCCCTTTAAGATAATCCCCAGGG  849
      |||||||| |||||||||||||||||||||||||||||| ||||||||||
seq2  TCACCAAGGTTTTAGCTATCTCCCACTTCCCTTTAAGATTATCCCCAGGG  849

seq1  TATTCAGTTCCTAAGAGTTC-TTTGCATATGGCACAGGCACAACTAAACG  898
      |||||||||| ||||||||| |||||||||||||||||||| ||||||||
seq2  TATTCAGTTCTTAAGAGTTCTTTTGCATATGGCACAGGCAC-ACTAAACG  898

seq1  TATGTTGGACAAATTAATTT-GGTTAGCCTTCACCAAAACTTGAAGTGGA  947
      |||||||||| ||||||||| |||||||||||| | ||||||| ||||||
seq2  TATGTTGGAC-AATTAATTTGGGTTAGCCTTCATCTAAACTTG-AGTGGA  946

seq1  GGAGTGTGCTTCATTTTGAAGATTTTGTGAAGAAAATCCATCAGAA-GGA  996
       |||||||||||||||||||||||||||| ||||| |  || |||| |||
seq2  -GAGTGTGCTTCATTTTGAAGATTTTGTG-AGAAATT--AT-AGAAGGGA  991

seq1  CAGAGGTGTGTTCCACTTTTCATATGCTGCTCC-TATACCATCTATTTCT  1045
      ||||||||||||||||||||||| ||||||||| ||| | ||| ||||||
seq2  CAGAGGTGTGTTCCACTTTTCATTTGCTGCTCCTTATGCAATCAATTTCT  1041

seq1  A-TGACTCAAACGTTTCAAAACA  1067
      | |||||||| || | |||||||
seq2  ATTGACTCAACCGATCCAAAACA  1064

seq1: chr5_110046966_110047665
seq2: B6Ng01-077D20.g_482_1164

seq1  GACTTCTTCCTTTCCAATTTTCATCTCCTTTATCTCCTTTAGTTTGCTTA  50
      | ||||||||||||||||||||||||||||||||||||| ||| |  |||
seq2  GGCTTCTTCCTTTCCAATTTTCATCTCCTTTATCTCCTTCAGTCTTTTTA  50

seq1  TTGCTCCAGCTAGAACTTCAAATTCTATTTGAACAGATATATAGAGAGTG  100
      |||||| |||||||||||||| |||||||   ||||||||||||||||||
seq2  TTGCTCTAGCTAGAACTTCAAGTTCTATT--GACAGATATATAGAGAGTG  98

seq1  AGTAGCCTTGATTTATTCCTGATTTCAGTGAAATTGCTTTGAGTTTCTCC  150
      || ||||||||||||||||||||||||||||||||||||||| ||||| |
seq2  AGCAGCCTTGATTTATTCCTGATTTCAGTGAAATTGCTTTGAATTTCT-C  147

seq1  CCCATTTAATTTGATGTTGACTATCAGCTTGCTATAAATTGCTTTCATTA  200
      |||||||||||||||||||||||||||| ||||||||||||| |||||||
seq2  CCCATTTAATTTGATGTTGACTATCAGCCTGCTATAAATTGCCTTCATTA  197

seq1  TGTTTTAGTATGTCCCTTTTATCCTTGATTTCTCCAACACTTTTAGTATG  250
      ||||||||||||||||||||||||||||||||||||||||||| || |||
seq2  TGTTTTAGTATGTCCCTTTTATCCTTGATTTCTCCAACACTTTCAGCATG  247

seq1  AAGGGGCTTTGGATTTTGTCAAAGACTTCTTCAGTACCTAATAAGATGAC  300
      ||||||||||||| ||| |||||||||||||||||| |||||||||||||
seq2  AAGGGGCTTTGGACTTTTTCAAAGACTTCTTCAGTATCTAATAAGATGAC  297

seq1  CATGTGG--GTTTTTTGCCCTTAACTTCATTTATGTGATGGGTTATATTA  348
      |||||||   |||||||||||||||||||||||||||||| |||||||| 
seq2  CATGTGGTTTTTTTTTGCCCTTAACTTCATTTATGTGATGTGTTATATTG  347

seq1  GCAGATTTTCATATGTTGAAATATCCCTACATCTCTGGGATGAAGCTTAC  398
      ||||| ||| ||||||||||| ||||||||||||||||||||||||||||
seq2  GCAGACTTTTATATGTTGAAACATCCCTACATCTCTGGGATGAAGCTTAC  397

seq1  TTGACCATGATGGATGATGTTTTTGATGTATTCTTGAAATCAGTTTGAAA  448
      ||||| ||| |||||||||||||||||||||||||||||| |  ||||||
seq2  TTGACTATGGTGGATGATGTTTTTGATGTATTCTTGAAAT-AAATTGAAA  446

seq1  GTATTTTATTGAGTATTTTTACATCAATGTTCATGAGGAAATTTGGTCTA  498
      |||||||||||||||||||| ||||||||||||  |||||| ||||||| 
seq2  GTATTTTATTGAGTATTTTTGCATCAATGTTCACAAGGAAAATTGGTCTG  496

seq1  TAAAGATACTTTGTATCATTTAAAA---ATAAGAACTTTATTTTATTGTA  545
      ||||||||||||| |||||||||||    ||   ||||||||||||| ||
seq2  TAAAGATACTTTGCATCATTTAAAATGTTTATAGACTTTATTTTATTATA  546

seq1  TTTATAGTTGTCCTAACAGATTTATTTCTAACTGAAAAATATCAAAATAT  595
      ||||||||||| ||||||||||  |||| ||||| |||||||||||  ||
seq2  TTTATAGTTGTACTAACAGATT--TTTC-AACTG-AAAATATCAAA--AT  590

seq1  AAAGAGAGACAAAAGCAAAAAGATCCATTAACTTATTAACACTGACAAAA  645
      ||||||||| | |||| ||| |  | ||| ||||||| ||| ||||   |
seq2  AAAGAGAGA-ATAAGCGAAAGG--CTATT-ACTTATT-ACA-TGAC---A  631

seq1  GGACAACACTAAAAATCTGGGCAAAAAAGATGGCTAGAATGTTTCT-AGA  694
       ||   | ||  |||||||||| ||||| || |||||||||||||| |||
seq2  CGAATGCGCT--AAATCTGGGC-AAAAACAT-GCTAGAATGTTTCTAAGA  677

seq1  GGTGAG  700
      ||||||
seq2  GGTGAG  683