BAC Information

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BAC

Clone NameB6Ng01-077E21
Chromosome5 (Build37)
Map Location 77,532,405 - 77,696,379
singlet/doubletdoublet
Overlap geneHod, Spink2
Upstream geneSrd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1, EG665055, Pdcl2, Pafah1b1-ps3, Nmu, LOC665065, EG639545, Exoc1, Cep135, LOC100039117, A730089K16Rik, LOC665107, LOC100039299, C530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik
Downstream geneRest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227, LOC100039398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077E21.bB6Ng01-077E21.g
ACCDH893316DH893317
length1,0801,010
definitionDH893316|Mus musculus domesticus DNA, BAC clone: B6Ng01-077E21, 5' end.DH893317|Mus musculus domesticus DNA, BAC clone: B6Ng01-077E21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,695,289 - 77,696,379)(77,532,405 - 77,533,414)
sequence
gaattcaactaactctaaaagaataaactgaaaaaagtaacaaattttaa
aaaactttttgatgactcttaaaggggtggctacggatcccttcttccca
caaaaggggaagttttaaagtgcttttttgttgttgttagaaaactccct
caagagtcgtgcaactcaacacgtcaaccaacttagccgcattgtgcttg
acttggcctacttgcctaggggaagccattacagatcaccttcttgaaaa
caagttgagtttctaaatggtctcaacctccagcctcaaaggtaccagtc
tcagaactcagtgtgcctcttgcaaattattaaaggcaagatatgcaaag
aataaaaaaagtactaaaagacaaactaaaaaccgaaaatactaaaagcg
ggccgcttcacctagagtctaaaacacaagctcgcccgctcactcgctcg
ctcagttacatgccccaacaaaaagttgagcccgaatgccatcacaggaa
acggctctcccctagttcaacagccccacggattccacaacggacctcaa
catccactctaaagcttcccccacgcacctcggcagccacactcccaagg
aaatctccacgtctctcgggcagactgtgctaagcacagcccgagagcaa
cgtgttgcaccgaattcctatgtgccgctgccaccagcgccggcctcggc
ggcggcattcctaactgaaataggcattcggccattttctcaaataccaa
acacaaagcagctctttgcaaacttgggccctcttgcttcctctccgcca
ccaacccgcgggcggtgcctgggctcggacctcacgcgctgcccaccacc
ctagaggcgcctccccggccggccgcggccccgcagccccctcccccgcc
gcccgccactagcccggccgggactgggccgaaaagttacctcgctaccc
tcgtccgatcgggcctgtaccggggctcgcgcgcctcccgaggctgtcgg
cccccgtcgctgcaaggggcccacgcggcccccaccgccgcccccgtgcc
cgaagtttgcgaacttcctccccgctgcgc
gaattcagaaaagtttcctccagaaagaatatgaactgtagatagactcc
caggctaactcacaactggagaatagctaaaattcaactatagctataat
tacaactatcaaagaaaattatcctgttaaagtacccaagtgaagccgtt
tacttatttggaaagcaaatgctttcctaaaagaccattttaattagaaa
ctggcttgggaaatgaggctttggttcagatatcaatgggacttgtgaga
aacttctgcagatgtgggggtttgtagtgcaattttgactacgccagtat
ctagggtagtccctgaaacactgtcaggtgttttgtgaattcttattgga
tttatttttcacttccttcatcctgacacggatacataactgttaaggct
gtattgcatcaccagtggaataaaggggcagaggaggaggaatagacgcc
ggctgcctgggacaggattaatcatgctgttaatagtgagtgataatcaa
aaggccaggcaggtattaccaagtccagtttggccttgatagggatagga
tgatatggttcctgcctctggaacagggccagcaggcatgggcctccatg
agtgtccatgactgctgtgggtataagaggtgtctatataataatgcgta
tattttatgttcctccttcaaggaatgtcctccctgttaacattaatgac
tccatgatgaccaaagacagcacgagtcagggagacgaaggtgtggctaa
tgtctcagtaacatggtaaacgctggggacctttcaggatagcctttaaa
ggttgtggaaaagaactctaaaaacatgagttcaaaaatatatatttctc
aactatgcaaaatataagatgtaatatgaatttatcagggcttcacagaa
ttaaaggaacagaggcactatactataagcaagcttgacagaaagataaa
agacaggcagaattctgagttcaaggtcagcctggacagggctaatttag
ggtccaggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_77695289_77696379
seq2: B6Ng01-077E21.b_48_1127 (reverse)

seq1  GCGCAGCGGGGGAGCGAAGTTCGCAAACTTCCGGGCCACGGGGGCGGCGG  50
      ||||||| |||||| ||||||||||||||||  || ||||||||||||||
seq2  GCGCAGC-GGGGAG-GAAGTTCGCAAACTTC--GGGCACGGGGGCGGCGG  46

seq1  TGGCGGCCCGCGTGGGGCCCCTCGCAGCGACCGGGGGCCGACAGCCTCGG  100
      ||| || |||||| |||||||| ||||||| |||||||||||||||||||
seq2  TGG-GGGCCGCGT-GGGCCCCTTGCAGCGA-CGGGGGCCGACAGCCTCGG  93

seq1  GAGGGCGCCGCG-GAGCCCCGGTACAGGCCCGATCGGACGCGGGTAGCGA  149
      ||||    |||| ||||||||||||||||||||||||||| |||||||||
seq2  GAGG----CGCGCGAGCCCCGGTACAGGCCCGATCGGACGAGGGTAGCGA  139

seq1  GGTAACTTTTCCGCCCAGTCCCGGCCGGGCTAGTGGCGGGCGGCGGGGGA  199
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGTAACTTTTCGGCCCAGTCCCGGCCGGGCTAGTGGCGGGCGGCGGGGGA  189

seq1  GGGGGCTGCGGGGCCGCGGCCGGCCGGGGAGGCGCCTCTAGGGTGGTGGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCTGCGGGGCCGCGGCCGGCCGGGGAGGCGCCTCTAGGGTGGTGGG  239

seq1  CAGCGCGTGAGGTCCGAGCCCAGGCACCGCCCGCGGGTTGGTGGCGGAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGCGTGAGGTCCGAGCCCAGGCACCGCCCGCGGGTTGGTGGCGGAGA  289

seq1  GGAAGCAAGAGGGCCCAAGTTTGCAAAGAGCTGCTTTGTGTTTGGTATTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGAAGCAAGAGGGCCCAAGTTTGCAAAGAGCTGCTTTGTGTTTGGTA-TT  338

seq1  TGAGAAAATGGCCGAATGCCTATTTCAGTTAGGAATGCCGCCGCCGAGGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAATGGCCGAATGCCTATTTCAGTTAGGAATGCCGCCGCCGAGGC  388

seq1  CGGCGCTGGTGGCAGCGGCACATAGGAATTCGGTGCAACACGTTGCTCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCGCTGGTGGCAGCGGCACATAGGAATTCGGTGCAACACGTTGCTCTC  438

seq1  GGGCTGTGCTTAGCACAGTCTGCCCGAGAGACGTGGAGATTTCCTTGGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTGCTTAGCACAGTCTGCCCGAGAGACGTGGAGATTTCCTTGGGA  488

seq1  GTGTGGCTGCCGAGGTGCGTGGGGGAAGCTTTAGAGTGGATGTTGAGGTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCTGCCGAGGTGCGTGGGGGAAGCTTTAGAGTGGATGTTGAGGTC  538

seq1  CGTTGTGGAATCCGTGGGGCTGTTGAACTAGGGGAGAGCCGTTTCCTGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGTGGAATCCGTGGGGCTGTTGAACTAGGGGAGAGCCGTTTCCTGTG  588

seq1  ATGGCATTCGGGCTCAACTTTTTGTTGGGGCATGTAACTGAGCGAGCGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATTCGGGCTCAACTTTTTGTTGGGGCATGTAACTGAGCGAGCGAG  638

seq1  TGAGCGGGCGAGCTTGTGTTTTAGACTCTAGGTGAAGCGGCCCGCTTTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCGGGCGAGCTTGTGTTTTAGACTCTAGGTGAAGCGGCCCGCTTTTA  688

seq1  GTATTTTCGGTTTTTAGTTTGTCTTTTAGTACTTTTTTTATTCTTTGCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTCGGTTTTTAGTTTGTCTTTTAGTACTTTTTTTATTCTTTGCAT  738

seq1  ATCTTGCCTTTAATAATTTGCAAGAGGCACACTGAGTTCTGAGACTGGTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCCTTTAATAATTTGCAAGAGGCACACTGAGTTCTGAGACTGGTA  788

seq1  CCTTTGAGGCTGGAGGTTGAGACCATTTAGAAACTCAACTTGTTTTCAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAGGCTGGAGGTTGAGACCATTTAGAAACTCAACTTGTTTTCAAG  838

seq1  AAGGTGATCTGTAATGGCTTCCCCTAGGCAAGTAGGCCAAGTCAAGCACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGATCTGTAATGGCTTCCCCTAGGCAAGTAGGCCAAGTCAAGCACA  888

seq1  ATGCGGCTAAGTTGGTTGACGTGTTGAGTTGCACGACTCTTGAGGGAGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGGCTAAGTTGGTTGACGTGTTGAGTTGCACGACTCTTGAGGGAGTT  938

seq1  TTCTAACAACAACAAAAAAGCACTTTAAAACTTCCCCTTTTGTGGGAAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACAACAACAAAAAAGCACTTTAAAACTTCCCCTTTTGTGGGAAGA  988

seq1  AGGGATCCGTAGCCACCCCTTTAAGAGTCATCAAAAAGTTTTTTAAAATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCCGTAGCCACCCCTTTAAGAGTCATCAAAAAGTTTTTTAAAATT  1038

seq1  TGTTACTTTTTTCAGTTTATTCTTTTAGAGTTAGTTGAATTC  1091
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTTTTTTCAGTTTATTCTTTTAGAGTTAGTTGAATTC  1080

seq1: chr5_77532405_77533414
seq2: B6Ng01-077E21.g_68_1077

seq1  GAATTCAGAAAAGTTTCCTCCAGAAAGAATATGAACTGTAGATAGACTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAAGTTTCCTCCAGAAAGAATATGAACTGTAGATAGACTCC  50

seq1  CAGGCTAACTCACAACTGGAGAATAGCTAAAATTCAACTATAGCTATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAACTCACAACTGGAGAATAGCTAAAATTCAACTATAGCTATAAT  100

seq1  TACAACTATCAAAGAAAATTATCCTGTTAAAGTACCCAAGTGAAGCCGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACTATCAAAGAAAATTATCCTGTTAAAGTACCCAAGTGAAGCCGTT  150

seq1  TACTTATTTGGAAAGCAAATGCTTTCCTAAAAGACCATTTTAATTAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATTTGGAAAGCAAATGCTTTCCTAAAAGACCATTTTAATTAGAAA  200

seq1  CTGGCTTGGGAAATGAGGCTTTGGTTCAGATATCAATGGGACTTGTGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTGGGAAATGAGGCTTTGGTTCAGATATCAATGGGACTTGTGAGA  250

seq1  AACTTCTGCAGATGTGGGGGTTTGTAGTGCAATTTTGACTACGCCAGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTGCAGATGTGGGGGTTTGTAGTGCAATTTTGACTACGCCAGTAT  300

seq1  CTAGGGTAGTCCCTGAAACACTGTCAGGTGTTTTGTGAATTCTTATTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGTAGTCCCTGAAACACTGTCAGGTGTTTTGTGAATTCTTATTGGA  350

seq1  TTTATTTTTCACTTCCTTCATCCTGACACGGATACATAACTGTTAAGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTCACTTCCTTCATCCTGACACGGATACATAACTGTTAAGGCT  400

seq1  GTATTGCATCACCAGTGGAATAAAGGGGCAGAGGAGGAGGAATAGACGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGCATCACCAGTGGAATAAAGGGGCAGAGGAGGAGGAATAGACGCC  450

seq1  GGCTGCCTGGGACAGGATTAATCATGCTGTTAATAGTGAGTGATAATCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCCTGGGACAGGATTAATCATGCTGTTAATAGTGAGTGATAATCAA  500

seq1  AAGGCCAGGCAGGTATTACCAAGTCCAGTTTGGCCTTGATAGGGATAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAGGCAGGTATTACCAAGTCCAGTTTGGCCTTGATAGGGATAGGA  550

seq1  TGATATGGTTCCTGCCTCTGGAACAGGGCCAGCAGGCATGGGCCTCCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGGTTCCTGCCTCTGGAACAGGGCCAGCAGGCATGGGCCTCCATG  600

seq1  AGTGTCCATGACTGCTGTGGGTATAAGAGGTGTCTATATAATAATGCGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCATGACTGCTGTGGGTATAAGAGGTGTCTATATAATAATGCGTA  650

seq1  TATTTTATGTTCCTCCTTCAAGGAATGTCCTCCCTGTTAACATTAATGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATGTTCCTCCTTCAAGGAATGTCCTCCCTGTTAACATTAATGAC  700

seq1  TCCATGATGACCAAAGACAGCACGAGTCAGGGAGACGAAGGTGTGGCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGATGACCAAAGACAGCACGAGTCAGGGAGACGAAGGTGTGGCTAA  750

seq1  TGTCTCAGTAACATGGTAAACGCT-GGGACC-TTCAGGATAGCCTTT-AA  797
      |||||||||||||||||||||||| |||||| ||||||||||||||| ||
seq2  TGTCTCAGTAACATGGTAAACGCTGGGGACCTTTCAGGATAGCCTTTAAA  800

seq1  GGTTGTGGAAAAGAACTCTAAAAACATGAGTTCAAAAATATATATTTCTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGGAAAAGAACTCTAAAAACATGAGTTCAAAAATATATATTTCTC  850

seq1  AACTATGCAAAATATAAAGATGTAATATGAA-TTATCAGGGGCTTCACAG  896
      ||||||||||||||| ||||||||||||||| |||||| |||||||||||
seq2  AACTATGCAAAATAT-AAGATGTAATATGAATTTATCA-GGGCTTCACAG  898

seq1  ATTTAAAGGAACAGAGGCACCTATACTATAAGCAAGCTTGACAGAAAGAT  946
      | ||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AATTAAAGGAACAGAGGCA-CTATACTATAAGCAAGCTTGACAGAAAGAT  947

seq1  ACAAAGACAGGCAGATTCCTGAGTTCAAGGTCAGCCTGTGACAGGGCTAA  996
      | ||||||||||||| | |||||||||||||||||||| |||||||||||
seq2  A-AAAGACAGGCAGAATTCTGAGTTCAAGGTCAGCCTG-GACAGGGCTAA  995

seq1  TTTA-GGTCCAGGTG  1010
      |||| ||||||||||
seq2  TTTAGGGTCCAGGTG  1010