BAC Information

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BAC

Clone NameB6Ng01-077G02
Chromosome5 (Build37)
Map Location 117,362,522 - 117,487,558
singlet/doubletdoublet
Overlap genenone
Upstream geneCit, Prkab1, LOC545798, Ccdc60, 4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943, Gm1684
Downstream geneLOC665073, Suds3, Taok3, Pebp1, LOC100042313, LOC100039359, BC023744, LOC667175, Wsb2, Rfc5, Ksr2, Nos1, Fbxo21, Tesc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077G02.bB6Ng01-077G02.g
ACCDH893372DH893373
length391568
definitionDH893372|Mus musculus domesticus DNA, BAC clone: B6Ng01-077G02, 5' end.DH893373|Mus musculus domesticus DNA, BAC clone: B6Ng01-077G02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,362,522 - 117,362,917)(117,486,985 - 117,487,558)
sequence
tgttgccctggtaaaactctttgattctgcctctttctggagctgagtta
attgccaggagtgttaggaaatggcaccaccccctctgttcacccagtga
gaccccgagccttaacaagacaacctcccgacaaagggtgttggatgccc
tctgactaaacttttctagtaggggattggctggcgagggagaaaaacta
aagaccaaggagagaagcttggggggagggagaggggagttgccattgat
ttctttgccaatgagaagtcttttaaaaaccacttttttagctgcagccc
tcagatgcctgagctgttacgccaagggagagagggggagggaatcaaag
tctgaatcagattaaactgtgatctttcattcatctgaaag
tttgactatgatttttaaatgacatgatcaggccacaagagggcagtgct
cagtgcaaaagaaggcattggtaatgggagaatttcaaaggaaataggaa
gacactgtggtggggctttctcttaaactatttttatatatttcatcaac
tatagccacgaacacagcagggggtgtgagtatttgtgttttcgagaggg
ggaggggaagctagggaggaggaggcccaagaacaggagagcaaagctcc
aggtttgcctttggagtgtctttggtaaggaagaagcaccatctgggggt
ttcatgactgggtgtgagcttgaactcgactggacagcagccatctctca
gagccgttctcagctgccttcatcagtctcctggacagctgcagcatccg
taggaccatttgcaggtcaggccctctctgtttttctgacaatcagatta
tcctagcttgactcaggtgccgcttaaccaagttaggtacagaataattt
aaagcctcatcactcatgatttgaaattctgccgaaggtatgacaggcta
aaggctgatctatgcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_117362522_117362917
seq2: B6Ng01-077G02.b_48_443

seq1  GAATTCTGTTGCCCTGGTAAAACTCTTTGATTCTGCCTCTTTCTGGAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTGCCCTGGTAAAACTCTTTGATTCTGCCTCTTTCTGGAGCT  50

seq1  GAGTTAATTGCCAGGAGTGTTAGGAAATGGCACCACCCCCTCTGTTCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAATTGCCAGGAGTGTTAGGAAATGGCACCACCCCCTCTGTTCACC  100

seq1  CAGTGAGACCCCGAGCCTTAACAAGACAACCTCCCGACAAAGGGTGTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGACCCCGAGCCTTAACAAGACAACCTCCCGACAAAGGGTGTTGG  150

seq1  ATGCCCTCTGACTAAACTTTTCTAGTAGGGGATTGGCTGGCGAGGGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTCTGACTAAACTTTTCTAGTAGGGGATTGGCTGGCGAGGGAGAA  200

seq1  AAACTAAAGACCAAGGAGAGAAGCTTGGGGGGAGGGAGAGGGGAGTTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAAGACCAAGGAGAGAAGCTTGGGGGGAGGGAGAGGGGAGTTGCC  250

seq1  ATTGATTTCTTTGCCAATGAGAAGTCTTTTAAAAACCACTTTTTTAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTTCTTTGCCAATGAGAAGTCTTTTAAAAACCACTTTTTTAGCTG  300

seq1  CAGCCCTCAGATGCCTGAGCTGTTACGCCAAGGGAGAGAGGGGGAGGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTCAGATGCCTGAGCTGTTACGCCAAGGGAGAGAGGGGGAGGGAA  350

seq1  TCAAAGTCTGAATCAGATCAAACTGTGATCTTTCATTCATCTGAAA  396
      |||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCAAAGTCTGAATCAGATTAAACTGTGATCTTTCATTCATCTGAAA  396

seq1: chr5_117486985_117487558
seq2: B6Ng01-077G02.g_69_642 (reverse)

seq1  AAAGCATAGATCAGCCTTTAGCCTGTCATGCCTTCGGCAGATTTTCAAAT  50
      ||||||||||||||||||||||||||||| ||||||||||| ||||||||
seq2  AAAGCATAGATCAGCCTTTAGCCTGTCATACCTTCGGCAGAATTTCAAAT  50

seq1  CCTGAGTGCTGAGGCTTTAAATTATTCTGTACCTAACTTGGTTAAGCGGC  100
      | |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTGATGAGGCTTTAAATTATTCTGTACCTAACTTGGTTAAGCGGC  100

seq1  ACCTGAGTCTAGCTAGGATAATCTGATTGTCAGAAAAACAGAGAGGGCCT  150
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGTCAAGCTAGGATAATCTGATTGTCAGAAAAACAGAGAGGGCCT  150

seq1  GACCTGCAAATGGTCCTGCGGATGCTGCAGCTGTCCAGGAGACTGATGAA  200
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GACCTGCAAATGGTCCTACGGATGCTGCAGCTGTCCAGGAGACTGATGAA  200

seq1  GGCAGCTGAGAACGGCTCTGAGAGATGGCTGCTGTCCAGTCGAGTTCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTGAGAACGGCTCTGAGAGATGGCTGCTGTCCAGTCGAGTTCAAG  250

seq1  CTCACACCCAGTCATGAAACCCCCAGATGGTGCTTCTTCCTTACCAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACCCAGTCATGAAACCCCCAGATGGTGCTTCTTCCTTACCAAAGA  300

seq1  CACTCCAAAGGCAAACCTGGAGCTTTGCTCTCCTGTTCTTGGGCCTCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCAAAGGCAAACCTGGAGCTTTGCTCTCCTGTTCTTGGGCCTCCTC  350

seq1  CTCCCTAGCTTCCCCTCCCCCTCTCGAAAACACAAATACTCACACCCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTAGCTTCCCCTCCCCCTCTCGAAAACACAAATACTCACACCCCCT  400

seq1  GCTGTGTTCGTGGCTATAGTTGATGAAATATATAAAAATAGTTTAAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTTCGTGGCTATAGTTGATGAAATATATAAAAATAGTTTAAGAGA  450

seq1  AAGCCCCACCACAGTGTCTTCCTATTTCCTTTGAAATTCTCCCATTACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCACCACAGTGTCTTCCTATTTCCTTTGAAATTCTCCCATTACCA  500

seq1  ATGCCTTCTTTTGCACTGAGCACTGCCCTCTTGTGGCCTGATCATGTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTCTTTTGCACTGAGCACTGCCCTCTTGTGGCCTGATCATGTCAT  550

seq1  TTAAAAATCATAGTCAAAGAATTC  574
      ||||||||||||||||||||||||
seq2  TTAAAAATCATAGTCAAAGAATTC  574