BAC Information

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BAC

Clone NameB6Ng01-077N07
Chromosome5 (Build37)
Map Location 58,852,336 - 58,853,488
singlet/doubletsinglet
Overlap geneLOC100041385
Upstream geneEG666465, Pcdh7
Downstream geneLOC100041396, LOC666499, EG625870, LOC100041425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077N07.bB6Ng01-077N07.g
ACCDH893703DH893704
length1,1511,176
definitionDH893703|Mus musculus domesticus DNA, BAC clone: B6Ng01-077N07, 5' end.DH893704|Mus musculus domesticus DNA, BAC clone: B6Ng01-077N07, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttttctaaaggatacatcaatgccttgaaattattcactatat
tttactaaaactcatcaaagagtgtgatatgtagaaaaataccatggaga
ctgtattcttatgtcatttaggatgtttcaatgaaaaatatttaacaatg
taagagaaaagttttattaagtaaaatcctgtggaaaatagaatggggta
agcatttagctttgaggaatgtctgcattgatattctttatagcatatat
cacctaacaaagctccagtaagacattaataaaggcaaagttttcttcct
cccttaactggatacccatgaacaaacctgactggacaattcagcccaga
gaaaaaaagccaagtcatcaaacaatggggctgttaatgatactctgagc
agaagagataaagcatccattgcctctgatgtccttcgattataaataga
cttgtttttcaagtaaaaattcagtacatgagatagaaatgtatatgctc
ataaatgggcttctagttttgctcatttttgatacaaatagttaagttag
tgacagggagggaagctacggaaagtttattagggaaagaatgaagaagg
ttgtatagaaccgaggctaaaaaacaaatgccccacttctctttggttgt
gagtccagtctctgcaggaaagtgtagttctcactctgcatcaagcaaac
tggtagcttcagcagatgactatcctcgtggaaatataaaccatcaagat
gcggagttgtgaaattcattatcaatggacataattatgggaccactcct
atacttaaagttcctggaatattgccaaagaaggacgactagacgaactg
taagagccagagtacagagagctggctgtgaagttctatctcttagaaat
ttcagatgctactcccatcaattcttaccaaaatgtttccctaaacatgc
actgtacaaggataagaacaatagaaatgctaaaggggactgagaaagct
gatgaacccttattcctacacagagaactacaagctattaaggatgaatg
ctgagacagaaatagacttttctagggaaaagaaagtacaccagtagtta
ctaataacaaatgtttcagccccctaaatgttatatcaactaacatacac
a
gaattctcacctgaggaataccgaatggctgagaagcacctaaaaaaaat
gtttagcatccttagtcatcagggaaatacaaatcaaaacaaacctgaga
ttccacttcacaccagtcagatggctaagataaaaaattcaggtgacagc
agatgctggggaggatgtggagaaagaggaacactcctctattgttggtg
ggattgcaagcttgtacaaacactctggaaatcagtctggtggttcctta
gaaaactggatatagtactactggaggatcctgcaatacctctcctgggc
atatatccagaagatattccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactattcagctattaaaaagaatgaatttatgaaattcctagacaa
atggatggacctggagggtatcatcatgaatgagttaacccaatcacaaa
ggaactcacacaatatatactcactgataagtggatattagcccagaaac
ttaggatacccaagatataagatacaatttgctaaacgcatgaaattcaa
gaataacgaagaccaaagtgtggacactttgccccttcttagaattagga
aaaaaacacccatggaaggagttacagagacaaagcttggagctgtgtca
aaaggatggatcatctagagcctgccatatccagggttccataccataat
cagcttccaaacactgacaccattgcataaactagcaagattttgcttaa
agtacccagatatagctatgtcttgtgagactatgccggggcctagcaac
acagaagtggatgctcacagtcaactattggatggatcacagggccccca
gtggaggagctagagaaagtacacagaagctaaatggatctgcaacccta
taggtagaacaacattatgaactaaccagtaccccagagctctgacttct
agctgcatatgtattaaaagatggctagttcagcatcacttgtagagaaa
ggcccattgacttgctacttcgtatgtcccagttcaaggttacgccaggc
caaaagtggaatgggccggtagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_58852336_58853488
seq2: B6Ng01-077N07.b_46_1196

seq1  GAATTCTTTTTCTAAAGGATACATCAATGCCTTGAAATTATTCACTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTCTAAAGGATACATCAATGCCTTGAAATTATTCACTATAT  50

seq1  TTTACTAAAACTCATCAAAGAGTGTGATATGTAGAAAAATACCATGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTAAAACTCATCAAAGAGTGTGATATGTAGAAAAATACCATGGAGA  100

seq1  CTGTATTCTTATGTCATTTAGGATGTTTCAATGAAAAATATTTAACAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTCTTATGTCATTTAGGATGTTTCAATGAAAAATATTTAACAATG  150

seq1  TAAGAGAAAAGTTTTATTAAGTAAAATCCTGTGGAAAATAGAATGGGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAAAAGTTTTATTAAGTAAAATCCTGTGGAAAATAGAATGGGGTA  200

seq1  AGCATTTAGCTTTGAGGAATGTCTGCATTGATATTCTTTATAGCATATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTAGCTTTGAGGAATGTCTGCATTGATATTCTTTATAGCATATAT  250

seq1  CACCTAACAAAGCTCCAGTAAGACATTAATAAAGGCAAAGTTTTCTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAACAAAGCTCCAGTAAGACATTAATAAAGGCAAAGTTTTCTTCCT  300

seq1  CCCTTAACTGGATACCCATGAACAAACCTGACTGGACAATTCAGCCCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAACTGGATACCCATGAACAAACCTGACTGGACAATTCAGCCCAGA  350

seq1  GAAAAAAAGCCAAGTCATCAAACAATGGGGCTGTTAATGATACTCTGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAGCCAAGTCATCAAACAATGGGGCTGTTAATGATACTCTGAGC  400

seq1  AGAAGAGATAAAGCATCCATTGCCTCTGATGTCCTTCGATTATAAATAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGATAAAGCATCCATTGCCTCTGATGTCCTTCGATTATAAATAGA  450

seq1  CTTGTTTTTCAAGTAAAAATTCAGTACATGAGATAGAAATGTATATGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTTCAAGTAAAAATTCAGTACATGAGATAGAAATGTATATGCTC  500

seq1  ATAAATGGGCTTCTAGTTTTGCTCATTTTTGATACAAATAGTTAAGTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGGGCTTCTAGTTTTGCTCATTTTTGATACAAATAGTTAAGTTAG  550

seq1  TGACAGGGAGGGAAGCTACGGAAAGTTTATTAGGGAAAGAATGAAGAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGGAGGGAAGCTACGGAAAGTTTATTAGGGAAAGAATGAAGAAGG  600

seq1  TTGTATAGAACCGAGGCTAAAAAACAAATGCCCCACTTCTCTTTGGTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAGAACCGAGGCTAAAAAACAAATGCCCCACTTCTCTTTGGTTGT  650

seq1  GAGTCCAGTCTCTGCAGGAAAGTGTAGTTCTCACTCTGCATCAAGCAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCAGTCTCTGCAGGAAAGTGTAGTTCTCACTCTGCATCAAGCAAAC  700

seq1  TGGTAGCTTCAGCAGATGACTATCCTCGTGGAAATATAAACCATCAAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGCTTCAGCAGATGACTATCCTCGTGGAAATATAAACCATCAAGAT  750

seq1  GCGGAGTTGTGAAATTCATTATCAATGGACATAATTATGGGACCACTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAGTTGTGAAATTCATTATCAATGGACATAATTATGGGACCACTCCT  800

seq1  ATACTTAAAGTTCCTGGAATATTGCCAAAGAAGGACGACTAGACGAACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAAAGTTCCTGGAATATTGCCAAAGAAGGACGACTAGACGAACTG  850

seq1  TAAGAGCCAGAGTACAGAGAGCTGGCTGTGAAGTTCTATCTCTTAGAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCCAGAGTACAGAGAGCTGGCTGTGAAGTTCTATCTCTTAGAAAT  900

seq1  TTCAGATGCTACTCCCATCAATTCTTACCAAAATGTTTCCCTAAACATGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATGCTACTCCCATCAATTCTTACCAAAATGTTTCCCTAAACATGC  950

seq1  ACTGTACAAGGATAAGAACAATAGAAATGCTAAAGGGGACTGAGAAAAGC  1000
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACTGTACAAGGATAAGAACAATAGAAATGCTAAAGGGGACTGAG-AAAGC  999

seq1  TGATGAACCCTTATCCCTACACAGAGAACTACAAGCTATTAAGGAATGAA  1050
      |||||||||||||| ||||||||||||||||||||||||||||| |||||
seq2  TGATGAACCCTTATTCCTACACAGAGAACTACAAGCTATTAAGG-ATGAA  1048

seq1  TGCTGAGACCAGAAATAGACTTTTCTAGGGAAAAG-AAGTACACCAGTTA  1099
      |||||||| |||||||||||||||||||||||||| ||||||||||| ||
seq2  TGCTGAGA-CAGAAATAGACTTTTCTAGGGAAAAGAAAGTACACCAG-TA  1096

seq1  GTTACTAATAACAAATG-TTCAGCCCCTAAAATG-TATATCAACTAACAT  1147
      ||||||||||||||||| |||||||||  ||||| |||||||||||||| 
seq2  GTTACTAATAACAAATGTTTCAGCCCCCTAAATGTTATATCAACTAACA-  1145

seq1  TACACA  1153
      ||||||
seq2  TACACA  1151