BAC Information

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BAC

Clone NameB6Ng01-077P11
Chromosome5 (Build37)
Map Location 16,815,492 - 16,816,679
singlet/doubletsinglet
Overlap genenone
Upstream geneCacna2d1, LOC668121, Hgf, EG668131, LOC626390
Downstream geneLOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36, Gnat3, Gnai1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077P11.bB6Ng01-077P11.g
ACCDH893798DH893799
length1,185522
definitionDH893798|Mus musculus domesticus DNA, BAC clone: B6Ng01-077P11, 5' end.DH893799|Mus musculus domesticus DNA, BAC clone: B6Ng01-077P11, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttatatattttgaatattagccctctctctgatgtgggtttag
tgaaaaatttccccaatctgcaggttattgatttgacttattgacactgt
cttttgctgtacagaggcttttcagtttcatgagatcccatttatcactt
cttgatcttagagtctgagccattagcatccttcttaggaaatttcactt
tgtgccaatgaatttttggctctttctcactttctcttctatgagattca
gtgtgtctggttattaagtttaacttaaaaacctaagacataaatgacaa
aagaggaagaacgggagacagagggaggcaaagatttctatttcttctgt
agaactgatatttcagtttgaaaatcttggtagttattaagtgattagga
gagagattctaggtcagaatttgtcatattagttttttgaccaaaaaaac
ctactatcaaatataataggcttcatgtgtccctagttgcccagatcatt
tcttaaatattgtcatcacaaggagaaagagctaaacctatcatgtaaag
aggtatttatggttgggttctaataaagctttattaaaccatacaggggg
gcaacttcaccctaggcttcttatataacctaaaattctaaagtttatag
caatttttatagagaaaatacatagaactttcctctcagaaggaaattgt
ctatatccctgcttttccaaatgatcattggtgacatcagcagttgaaat
agagaagaatgaagagatttaaaatttctattaaatttttattatttcac
atgtaaataaccacatggtattattgaccatacactatgcactgtacttt
tgaaatgtttttaaaatctgagtgtagatccttaaatttaactcatttcc
tgctttctagcataaagacatctttttcatgctttgaagattgtcaaagt
gcaaaatttgggaaagcactcacttttttttttttaaagattgcttactc
caaacacaatgggcctgaggcaccatatgaactcaccaggagatggcaac
agcatgcaaagacctgcctaagttgaagccagatggggcctcaggaaatc
cttaccatggatttatgagcaacaaacttatgacttcaagaaccaaagat
tcagaatctcaatactacatgctctgttcaggatg

aggttatttgacactgctgatcttcctatagtgtcaccctcttcagcttc
tgctagggacaaaaatggagaagagactgagggaaaggaggttcagtgac
cagcccaaatatcggtccagctcaaggggaggctacaaagcctgacacta
tcattgataatatggtgtatgtttttctttaccatatcttcaatacctga
gattctttcttccatctctcttttttttaattgcttattttatttattta
catttcaaatgttgtcccccttccaggtctctctcccctccacaaactca
ctactccaccatccctccactttgcctctaagagggtacttacctaccca
cccatcccttcccacctcacccctctagcatccccctatgttggggcaat
aagcttccacagaaccaagggcctctcctctcattgatgccagatagagt
aatcctctgctacataggtagctgaagccatgaacccatacctgggattt
cgggggtgggggtagggggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_16815492_16816679
seq2: B6Ng01-077P11.b_41_1225

seq1  GAATTCTTTATATATTTTGAATATTAGCCCTCTCTCTGATGTGGGTTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATATATTTTGAATATTAGCCCTCTCTCTGATGTGGGTTTAG  50

seq1  TGAAAAATTTCCCCAATCTGCAGGTTATTGATTTGACTTATTGACACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATTTCCCCAATCTGCAGGTTATTGATTTGACTTATTGACACTGT  100

seq1  CTTTTGCTGTACAGAGGCTTTTCAGTTTCATGAGATCCCATTTATCACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCTGTACAGAGGCTTTTCAGTTTCATGAGATCCCATTTATCACTT  150

seq1  CTTGATCTTAGAGTCTGAGCCATTAGCATCCTTCTTAGGAAATTTCACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATCTTAGAGTCTGAGCCATTAGCATCCTTCTTAGGAAATTTCACTT  200

seq1  TGTGCCAATGAATTTTTGGCTCTTTCTCACTTTCTCTTCTATGAGATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCAATGAATTTTTGGCTCTTTCTCACTTTCTCTTCTATGAGATTCA  250

seq1  GTGTGTCTGGTTATTAAGTTTAACTTAAAAACCTAAGACATAAATGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTGGTTATTAAGTTTAACTTAAAAACCTAAGACATAAATGACAA  300

seq1  AAGAGGAAGAACGGGAGACAGAGGGAGGCAAAGATTTCTATTTCTTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAGAACGGGAGACAGAGGGAGGCAAAGATTTCTATTTCTTCTGT  350

seq1  AGAACTGATATTTCAGTTTGAAAATCTTGGTAGTTATTAAGTGATTAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGATATTTCAGTTTGAAAATCTTGGTAGTTATTAAGTGATTAGGA  400

seq1  GAGAGATTCTAGGTCAGAATTTGTCATATTAGTTTTTTGACCAAAAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATTCTAGGTCAGAATTTGTCATATTAGTTTTTTGACCAAAAAAAC  450

seq1  CTACTATCAAATATAATAGGCTTCATGTGTCCCTAGTTGCCCAGATCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTATCAAATATAATAGGCTTCATGTGTCCCTAGTTGCCCAGATCATT  500

seq1  TCTTAAATATTGTCATCACAAGGAGAAAGAGCTAAACCTATCATGTAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAATATTGTCATCACAAGGAGAAAGAGCTAAACCTATCATGTAAAG  550

seq1  AGGTATTTATGGTTGGGTTCTAATAAAGCTTTATTAAACCATACAGGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTTATGGTTGGGTTCTAATAAAGCTTTATTAAACCATACAGGGGG  600

seq1  GCAACTTCACCCTAGGCTTCTTATATAACCTAAAATTCTAAAGTTTATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTCACCCTAGGCTTCTTATATAACCTAAAATTCTAAAGTTTATAG  650

seq1  CAATTTTTATAGAGAAAATACATAGAACTTTCCTCTCAGAAGGAAATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTATAGAGAAAATACATAGAACTTTCCTCTCAGAAGGAAATTGT  700

seq1  CTATATCCCTGCTTTTCCAAATGATCATTGGTGACATCAGCAGTTGAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCCCTGCTTTTCCAAATGATCATTGGTGACATCAGCAGTTGAAAT  750

seq1  AGAGAAGAATGAAGAGATTTAAAATTTCTATTAAATTTTTATTATTTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGAATGAAGAGATTTAAAATTTCTATTAAATTTTTATTATTTCAC  800

seq1  ATGTAAATAACCACATGGTATTATTGACCATACACTATGCACTGTACTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATAACCACATGGTATTATTGACCATACACTATGCACTGTACTTT  850

seq1  TGAAATGTTTTTAAAATCTGAGTGTAGATCCTTAAATTTAACTCATTTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGTTTTTAAAATCTGAGTGTAGATCCTTAAATTTAACTCATTTCC  900

seq1  TGCTTTCTAGCATAAAGACATCTTTTTCATGCTTTGAAGATTGTCAAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTAGCATAAAGACATCTTTTTCATGCTTTGAAGATTGTCAAAGT  950

seq1  GCAAAATTT-GGAAAGCACTCACTTTTTTTTTTTTTAAAGATTGCTTACT  999
      ||||||||| ||||||||||||| ||||||||||||||||||||||||||
seq2  GCAAAATTTGGGAAAGCACTCAC-TTTTTTTTTTTTAAAGATTGCTTACT  999

seq1  CCAAACACAATGGGCCTGAAGCA-CATATGAACTCAC--AGAGATGGCAA  1046
      ||||||||||||||||||| ||| |||||||||||||   ||||||||||
seq2  CCAAACACAATGGGCCTGAGGCACCATATGAACTCACCAGGAGATGGCAA  1049

seq1  CAGCATGCAAAGACCTGCCTAGGTTGAAGCCAGATGGGG-CTCAGGGAAA  1095
      ||||||||||||||||||||| ||||||||||||||||| |||| |||||
seq2  CAGCATGCAAAGACCTGCCTAAGTTGAAGCCAGATGGGGCCTCA-GGAAA  1098

seq1  TCCTTACCAT-GATTTATGAGCAAACATACTTTATGACTTTCAAGACACA  1144
      |||||||||| ||||||||||| |||| || ||||||| ||||||| || 
seq2  TCCTTACCATGGATTTATGAGC-AACAAAC-TTATGAC-TTCAAGA-ACC  1144

seq1  AAAGATTCTGGATCTTCACATTACTACATGCTCCTGTCAGGATG  1188
      |||||||| | ||||   || ||||||||||||   ||||||||
seq2  AAAGATTCAGAATCT---CAATACTACATGCTCTGTTCAGGATG  1185


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