BAC Information

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BAC

Clone NameB6Ng01-078G08
Chromosome5 (Build37)
Map Location 86,911,036 - 86,912,024
singlet/doubletsinglet
Overlap genenone
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a
Downstream gene9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078G08.bB6Ng01-078G08.g
ACCDH894106DH894107
length9861,189
definitionDH894106|Mus musculus domesticus DNA, BAC clone: B6Ng01-078G08, 5' end.DH894107|Mus musculus domesticus DNA, BAC clone: B6Ng01-078G08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttatggggattgcattgaatctgtagattggtttaggcaagata
gccatttttttttttttttttttttttttacattcttgaacttctgagac
tctgctatcccatctagtattctcatgagaaagttcaaagtgtttatttt
ggaatatggcttcacatttcccaataggagtcagctattgtatctggctg
gcactgaggaaaagccaagcctgcccattacctgtgccaaggtgagtttt
accaaacaggtttcggatgaattccagggttgagattttacaggttcaca
gtgactattacaactcactcccatttgctgactgtctagcacaaactagc
tctcccagtgggaatcacactgataaattctcaagagtgaaccagtccca
gggctggaaagatggcttagcagttcaagtgattcccacaaagacaagaa
gaccagagtttagatttgaacagtatataaatgccatgacctctgggttt
gattgagatgtcctgtataattgtaaaattatttcacttaaaaaataaat
agcaaatgtagaagcaaacattttatgtttgttatttaataggataatgt
acataaaaaactttaaatttcaatttgcttacgagaaaataagagaaaga
atgttagattttcttctacagggaaagcttacataggtttttatcatgaa
gttctaatagaatgtattttgtaaaataacatgagccagaagatggcact
atagctgcatatttggtctatgtgtgtattattcattagtcttctatttc
cccatttcctagatttaacaataataaaatcatagtaacagattggctga
tccagttcttgtcttatttgggttagctgcttgcttagtagcatttctat
caccttaacgtctctctattaatattattcttttgtttgactgccataaa
taactcttcctgggctaagaaatagtctgttattta
gaattcaataattggtgaccttagccaaaattccaacattggggagatgg
aacctgaagagaccacctccagtagttagagagggcccacagtggtgaga
tggggataccaacccaccttcaacccaaaattgttcctgtctatgaaatg
cagagaaaaaaattggaacatagattgaaagaaaggccaaccagtgactg
gttcaacttgggatccatcccatgggcaagcaccaaaccctgacactatt
actggtgccatgttgtgcttacagactaacatggctgttttctgagaggt
ctaccaatagctgactaagacagatgcagatacttacagccaaccattgg
accaaggttggggacctctatggaagtgctaggggaagggttgaagcagc
caaagtggatggcaaactcataggaagtaaaccacaatgtattcactcag
tttacacacacacacacacacacacacacacacacacacacacacacaca
cacacacacacacacacacaaagagagagagagagagagagagagagaga
gagagagagagagaaacagagatagagagacagaagacagggagagagaa
atattcagggacagagagacagatggagaaagagatggacagggagaaaa
atatagatagatagatagatagatagatagatagatagatagatagatag
atagacagacagacagacagacagattgttcaaataaggaaaaacatgtt
cagtagaaagaactttgaagaaaataacaaatctccagattttttgaaag
gctggaggtggaggcttttgattgagccccagtgatgactcacagaacag
caaaagtagtgccatgggaagcttttgcggaagtcacagataatatccgg
taactataccaccagctatactctccttattgtcacaactgcttctcagg
aaatggaggagtgaatttgtgaacattgcttcagaagcttcacaagctaa
tgtgttgtgctggagacacaaaatctctccttactatttgaaggcctctg
gttgtttatctattaagaagaaagctaatttgttcccttaatccaaatcg
agagggacttacggaagatgtggtgtagaatccccgtttctgtgcacaga
gggggaactctttaatatgaaggggtgtggagtgtaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_86911036_86912024
seq2: B6Ng01-078G08.b_45_1030

seq1  GAATTCTTATGGGGATTGCATTGAATCTGTAGATTGGTTTAGGCAAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATGGGGATTGCATTGAATCTGTAGATTGGTTTAGGCAAGATA  50

seq1  GCCATTTTTTTTTTTTTTTTTTTTTTTTTACATTCTTGAACTTCTGAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTTTTTTTTTTTTTTTTTTTTTTTACATTCTTGAACTTCTGAGAC  100

seq1  TCTGCTATCCCATCTAGTATTCTCATGAGAAAGTTCAAAGTGTTTATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTATCCCATCTAGTATTCTCATGAGAAAGTTCAAAGTGTTTATTTT  150

seq1  GGAATATGGCTTCACATTTCCCAATAGGAGTCAGCTATTGTATCTGGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATGGCTTCACATTTCCCAATAGGAGTCAGCTATTGTATCTGGCTG  200

seq1  GCACTGAGGAAAAGCCAAGCCTGCCCATTACCTGTGCCAAGGTGAGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGAGGAAAAGCCAAGCCTGCCCATTACCTGTGCCAAGGTGAGTTTT  250

seq1  ACCAAACAGGTTTCGGATGAATTCCAGGGTTGAGATTTTACAGGTTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACAGGTTTCGGATGAATTCCAGGGTTGAGATTTTACAGGTTCACA  300

seq1  GTGACTATTACAACTCACTCCCATTTGCTGACTGTCTAGCACAAACTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTATTACAACTCACTCCCATTTGCTGACTGTCTAGCACAAACTAGC  350

seq1  TCTCCCAGTGGGAATCACACTGATAAATTCTCAAGAGTGAACCAGTCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCAGTGGGAATCACACTGATAAATTCTCAAGAGTGAACCAGTCCCA  400

seq1  GGGCTGGAAAGATGGCTTAGCAGTTCAAGTGATTCCCACAAAGACAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGAAAGATGGCTTAGCAGTTCAAGTGATTCCCACAAAGACAAGAA  450

seq1  GACCAGAGTTTAGATTTGAACAGTATATAAATGCCATGACCTCTGGGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGAGTTTAGATTTGAACAGTATATAAATGCCATGACCTCTGGGTTT  500

seq1  GATTGAGATGTCCTGTATAATTGTAAAATTATTTCACTTAAAAAATAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAGATGTCCTGTATAATTGTAAAATTATTTCACTTAAAAAATAAAT  550

seq1  AGCAAATGTAGAAGCAAACATTTTATGTTTGTTATTTAATAGGATAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATGTAGAAGCAAACATTTTATGTTTGTTATTTAATAGGATAATGT  600

seq1  ACATAAAAAACTTTAAATTTCAATTTGCTTACGAGAAAATAAGAGAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAAAACTTTAAATTTCAATTTGCTTACGAGAAAATAAGAGAAAGA  650

seq1  ATGTTAGATTTTCTTCTACAGGGAAAGCTTACATAGGTTTTTATCATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGATTTTCTTCTACAGGGAAAGCTTACATAGGTTTTTATCATGAA  700

seq1  GTTCTAATAGAATGTATTTTGTAAAATAACATGAGCCAGAAGATGGCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAATAGAATGTATTTTGTAAAATAACATGAGCCAGAAGATGGCACT  750

seq1  ATAGCTGCATATTTGGTCTATGTGTGTATTATTCATTAGTCTTCTATTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGCATATTTGGTCTATGTGTGTATTATTCATTAGTCTTCTATTTC  800

seq1  CCCATTTCCTAGATTTAACAATAATAAAATCATAGTAACAGATTGGCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTCCTAGATTTAACAATAATAAAATCATAGTAACAGATTGGCTGA  850

seq1  TCCAGTTCTTGTCTTATTTGGGTTAGCTGCTTGCTTAGGTAGCATTTCTA  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCCAGTTCTTGTCTTATTTGGGTTAGCTGCTTGCTTA-GTAGCATTTCTA  899

seq1  TCACCTTAACGTCTCTCTATTAATTATTATTCTTTTGTTTGACTGCCATA  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCACCTTAACGTCTCTCTATTAA-TATTATTCTTTTGTTTGACTGCCATA  948

seq1  AATACCTCTTCCTGGGCTAAGAAATAGTCTGTTAATTTA  989
      |||| |||||||||||||||||||||||||||| |||||
seq2  AATAACTCTTCCTGGGCTAAGAAATAGTCTGTT-ATTTA  986