BAC Information

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BAC

Clone NameB6Ng01-078H04
Chromosome5 (Build37)
Map Location 54,838,248 - 54,865,513
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041911, Rbpj, Cckar, Tbc1d19, Stim2
Downstream geneEG666377, LOC666380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078H04.bB6Ng01-078H04.g
ACCDH894142DH894143
length1,207571
definitionDH894142|Mus musculus domesticus DNA, BAC clone: B6Ng01-078H04, 5' end.DH894143|Mus musculus domesticus DNA, BAC clone: B6Ng01-078H04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,864,302 - 54,865,513)(54,838,248 - 54,838,822)
sequence
gaattctattctgctcattgatactttccttctccttgccacacttgggt
cactgaggaggaacacttattatgaaagcaaaagaacatgaattcaaatc
cctaggatctgtgtaaagcttagaatagccatgagtcctgtaaccccacc
tttggaaacagagacaggcagattccaggagcacactaacttggcaacct
tgccaacatgttgcagtgagcttcaggttcagtagaagaccttgtctcaa
gaaataaaagtagagaataatcaaggaagacatatgatttggccctctga
tctcctcatacatgttcctgggcacccccacagaacacaaacacacacat
acaccatgtagaataacttggttgctgttttgaaacaaagagccctgact
tatgaaataggtaaataaataaatgtatcaatagatacagcactttctca
taaatccccaaaacattatgccatgaataagtgtaagaacaactgtttca
aagaatgagaataaagtctcatggttactattataatttcatttaaaaat
aaatggcaccacttattcctggtgatacaaccttgaattttgaaggtctt
tttgcttctgatccccatgtataaaggagaaaaacaatggcaccaatcta
gtggaatgcttggaaaaactctggttagatacactgagcactcagaacaa
ggtagttcttgacaagggagtttcaaggggaaaattaatcagtctactta
gaaaccatgtgttcctttagatagctggcaataaatagatgggtccagaa
aagaatttcaaaaccctgaaaatgagcacatggggtttcaagctctcttg
tgaacatctgatgatgagagggataaacacacacacacacacacacacac
acacacacacacacacacacacacacacacacacgggtctacaacagaaa
gagaagctgcagagatctgtctgaatgtttatctctgaaatgtaaacagt
agcagtgcaaacccataccacacacacccagatataagccctcccacgtc
tacctccttgagaacttatcagtcttttttgtctctagcactgagctata
aatgagggaacctgaagaatatgccctcatggagcttaaaccaaccgaac
attataccaagtgaataataagacctggaaaggccagccaaattcatggt
tccatga
caggccagcttaggctacaatatgagtcttacagggaaactgagttccag
agatgaggaattcttatccagacttgtatccaggcaaagcctaaagagac
tgagttaggtctgtaagatcacatgaccaggattcattcttacgagtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagag
agagagagagaacaataactgtcaagttgacaacatctgatatcacctag
gagataagcccccaggcacatctgtgagggaatatctaaggaaggttagc
ctctgaggatgtttgtgagaactaccttagttgaggtggcaagacccatc
ctaaaggagggcagtaccactcactggacttcaattttaaactgcatata
aagcaggaagctaggggagggcaggcattcactgttctcttctggatcca
gaaaggaatgcaatcagctgctttaaactcttgctgccttgacttccctg
ccatgggactggtcctgtgagctgagctgaaataaaatcctttctcccct
tgagttatatattgtcaagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_54864302_54865513
seq2: B6Ng01-078H04.b_43_1249 (reverse)

seq1  TCATGGAACACCATAGAATTGGCTGGCCTCTC--AGTCTTATTAATTCAC  48
      |||||||  |||||  | ||||||||||| ||   |||||||| ||||||
seq2  TCATGGA--ACCATGAATTTGGCTGGCCTTTCCAGGTCTTATT-ATTCAC  47

seq1  TTGTGTATAATGGTCTGTT-GTATAAGCTCCATGAGGGCAATATTCCTTC  97
      ||| |||||||| || ||| || |||||||||||||||| ||||| ||||
seq2  TTG-GTATAATGTTCGGTTGGTTTAAGCTCCATGAGGGC-ATATT-CTTC  94

seq1  AGTTTCCCTCATTTAATAGCTCAAGTGCCTTAGAGACAAAAAGACCTGAT  147
      || ||||||||||| ||||||| |||||  ||||||||||||   |||||
seq2  AGGTTCCCTCATTT-ATAGCTC-AGTGC--TAGAGACAAAAAAGACTGAT  140

seq1  AAG-TCTCAAGGA-GTAGACGTGAGAAGGCTTATATCTGAGTGTGTGT-G  194
      ||| ||||||||| ||||||||| || |||||||||||| |||||||| |
seq2  AAGTTCTCAAGGAGGTAGACGTGGGAGGGCTTATATCTGGGTGTGTGTGG  190

seq1  TATGTGTTTGCACTGCTACTGTTTACATTTCAGAGATAAACATTCAGACA  244
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTTTGCACTGCTACTGTTTACATTTCAGAGATAAACATTCAGACA  240

seq1  GATCTCTGCAGCTTCTCTTTCTGTTGTAGACCCGGTGTGTGTGTGTGTGT  294
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GATCTCTGCAGCTTCTCTTTCTGTTGTAGACCC-GTGTGTGTGTGTGTGT  289

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTATCCCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTATCCCT  339

seq1  CTCATCATCAGATGTTCACAAGAGAGCTTGAAACCCCATGTGCTCATTTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCATCAGATGTTCACAAGAGAGCTTGAAACCCCATGTGCTCATTTT  389

seq1  CAGGGTTTTGAAATTCTTTTCTGGACCCATCTATTTATTGCCAGCTATCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTTGAAATTCTTTTCTGGACCCATCTATTTATTGCCAGCTATCT  439

seq1  AAAGGAACACATGGTTTCTAAGTAGACTGATTAATTTTCCCCTTGAAACT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAACACATGGTTTCTAAGTAGACTGATTAATTTTCCCCTTGAAACT  489

seq1  CCCTTGTCAAGAACTACCTTGTTCTGAGTGCTCAGTGTATCTAACCAGAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTCAAGAACTACCTTGTTCTGAGTGCTCAGTGTATCTAACCAGAG  539

seq1  TTTTTCCAAGCATTCCACTAGATTGGTGCCATTGTTTTTCTCCTTTATAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCAAGCATTCCACTAGATTGGTGCCATTGTTTTTCTCCTTTATAC  589

seq1  ATGGGGATCAGAAGCAAAAAGACCTTCAAAATTCAAGGTTGTATCACCAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGATCAGAAGCAAAAAGACCTTCAAAATTCAAGGTTGTATCACCAG  639

seq1  GAATAAGTGGTGCCATTTATTTTTAAATGAAATTATAATAGTAACCATGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGTGGTGCCATTTATTTTTAAATGAAATTATAATAGTAACCATGA  689

seq1  GACTTTATTCTCATTCTTTGAAACAGTTGTTCTTACACTTATTCATGGCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTATTCTCATTCTTTGAAACAGTTGTTCTTACACTTATTCATGGCA  739

seq1  TAATGTTTTGGGGATTTATGAGAAAGTGCTGTATCTATTGATACATTTAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTTTGGGGATTTATGAGAAAGTGCTGTATCTATTGATACATTTAT  789

seq1  TTATTTACCTATTTCATAAGTCAGGGCTCTTTGTTTCAAAACAGCAACCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACCTATTTCATAAGTCAGGGCTCTTTGTTTCAAAACAGCAACCA  839

seq1  AGTTATTCTACATGGTGTATGTGTGTGTTTGTGTTCTGTGGGGGTGCCCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTCTACATGGTGTATGTGTGTGTTTGTGTTCTGTGGGGGTGCCCA  889

seq1  GGAACATGTATGAGGAGATCAGAGGGCCAAATCATATGTCTTCCTTGATT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATGTATGAGGAGATCAGAGGGCCAAATCATATGTCTTCCTTGATT  939

seq1  ATTCTCTACTTTTATTTCTTGAGACAAGGTCTTCTACTGAACCTGAAGCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTACTTTTATTTCTTGAGACAAGGTCTTCTACTGAACCTGAAGCT  989

seq1  CACTGCAACATGTTGGCAAGGTTGCCAAGTTAGTGTGCTCCTGGAATCTG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCAACATGTTGGCAAGGTTGCCAAGTTAGTGTGCTCCTGGAATCTG  1039

seq1  CCTGTCTCTGTTTCCAAAGGTGGGGTTACAGGACTCATGGCTATTCTAAG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCTGTTTCCAAAGGTGGGGTTACAGGACTCATGGCTATTCTAAG  1089

seq1  CTTTACACAGATCCTAGGGATTTGAATTCATGTTCTTTTGCTTTCATAAT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACACAGATCCTAGGGATTTGAATTCATGTTCTTTTGCTTTCATAAT  1139

seq1  AAGTGTTCCTCCTCAGTGACCCAAGTGTGGCAAGGAGAAGGAAAGTATCA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTCCTCCTCAGTGACCCAAGTGTGGCAAGGAGAAGGAAAGTATCA  1189

seq1  ATGAGCAGAATAGAATTC  1212
      ||||||||||||||||||
seq2  ATGAGCAGAATAGAATTC  1207

seq1: chr5_54838248_54838822
seq2: B6Ng01-078H04.g_68_644

seq1  GAATTCCAGGCCAGCTTAGGCTACAATATGAGTCTTACAGGGAAACTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAGCTTAGGCTACAATATGAGTCTTACAGGGAAACTGAG  50

seq1  TTCCAGAGATGAGGAATTCTTATCCAGACTTGTATCCAGGCAAAGCCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAGATGAGGAATTCTTATCCAGACTTGTATCCAGGCAAAGCCTAA  100

seq1  AGAGACTGAGTTAGGTCTGTAAGATCACATGACCAGGATTCATTCTTACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTGAGTTAGGTCTGTAAGATCACATGACCAGGATTCATTCTTACG  150

seq1  AGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAG  200

seq1  AGAGAGAGAGAGAGAGAACAATAACTGTCAAGTTGACAACATCTGATATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAACAATAACTGTCAAGTTGACAACATCTGATATC  250

seq1  ACCTAGGAGATAAGCCCCCAGGCACATCTGTGAGGGAATATCTAAGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGAGATAAGCCCCCAGGCACATCTGTGAGGGAATATCTAAGGAAG  300

seq1  GTTAGCCTCTGAGGATGTTTGTGAGAACTACCTTAGTTGAGGTGGCAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCCTCTGAGGATGTTTGTGAGAACTACCTTAGTTGAGGTGGCAAGA  350

seq1  CCCATCCTAAAGGAGGGCAGTACCACTCACTGGACTTCAATTTTAAACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCTAAAGGAGGGCAGTACCACTCACTGGACTTCAATTTTAAACTG  400

seq1  CATATAAAGCAGGAAGCTAGGGGAGGGCAGGCATTCACTGTTCTCTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAAGCAGGAAGCTAGGGGAGGGCAGGCATTCACTGTTCTCTTCTG  450

seq1  GATCCAGAAAGGAATGCAATCAGCTGCTTTAAACTCTTGCTGCCTTGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGAAAGGAATGCAATCAGCTGCTTTAAACTCTTGCTGCCTTGACT  500

seq1  TCCCTGCCATGGGACTGGTCCTGTGAGCTGAGCTGAAAT-AAATCCTTTC  549
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCCCTGCCATGGGACTGGTCCTGTGAGCTGAGCTGAAATAAAATCCTTTC  550

seq1  T-CCCTTGAGTTATATATTGTCAAGAG  575
      | |||||||||||||||||||||||||
seq2  TCCCCTTGAGTTATATATTGTCAAGAG  577