BAC Information

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BAC

Clone NameB6Ng01-078M05
Chromosome5 (Build37)
Map Location 80,316,457 - 80,432,293
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039506, LOC100039384
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078M05.bB6Ng01-078M05.g
ACCDH894372DH894373
length1,0431,131
definitionDH894372|Mus musculus domesticus DNA, BAC clone: B6Ng01-078M05, 5' end.DH894373|Mus musculus domesticus DNA, BAC clone: B6Ng01-078M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,316,457 - 80,317,518)(80,431,154 - 80,432,293)
sequence
gaattctcaaccaagggataccgaatgactaataaacacctaaagaaatg
ctcaacacctttagttactagggaaaagcaaatcaaaacaaccataacac
tatacctcaaaccagtcagaatggctaaaaccaaaaactcaggtgagagc
agatgctggtgaggatgtggagaaagaggaacactcctccattgttggtg
ggattccaagctggtacaaccactctggaaatcagtttggcagttcctca
gaaaattggacatagtactaccggaggacccagctataccactcctgggc
atatatccagaaaatgctccaacatgttataaggacacttgcttcactat
gttcataacagccttatttatagccagaagctggaaagaacctagatgtc
cttcaacagaggaatggatactgacaatgtggtaaaaacaatgaattcac
gaaattcttaggcaaatggattgaacaagtttttttttccttattataac
ttcttttgttaagaatccaatgcagaggcagaggcaggtggatttctgag
tttgaggccagcctggtctacaaagtgagtgccaggacagccagggctac
acagagaaaccctgtctcgaaaaacctgttaagactgactaaaggtataa
aaaaaaaaaacacagaaaaacatttctaatgcaacttagaattactataa
atgaatgtaaactagaagttacctgtgtattattgcctaactacattatt
catatgctagccagtcatttttatcacagtgatttcctagccttttcaac
ttttcaatacctttccgagattaccataatacatttcgtttttttctttt
ttaaaattaggtattttcttcatttacatttccagtactatcgcaaagtc
cccataccctccatcccactctctaccaaccactactacttcttggccct
ggcgttccctatactgagcatataagttgcacgacaatgggctctgtttc
cctgatgactattagtcatcttctgatacaatgcagctagaga
gaattcctgaggcaattcatagatacacccacatatttttatctgtgcat
ctttctagtccagctgaaaactttgataacccattgtgtagtctacatat
ctctatatttctatatctctatatctacatatttacttgtgtatttccct
cagattgcaaatctgttccagaatccctaacaaaacatagtgaaatgttt
ctgtaattttatattcttgtatttaatggcagtagtagaccaatttatag
atatgtaatcattcattcatatttatatatttggtttgtgtcagttttct
ttgatgagcattacagttggaaaaaactcccacttcaatcaaccacaaca
ttggcaatgtactggaagtgtatactttggaagccaagaatatgtttaaa
aagagtatttgtggtgaatatcacagaaactaatattatcaattcagtta
acatatggcacactttatattcatccaaaatgtcctttaatctagcaaat
tattactcttttgccacagcacaatcaggatcctaccatgtgtggcaaag
aatgtttcccaagacctctgcagttctaagactcccttggacttaaaatt
tgacttcgctatctcatagatgtgttttcatattctcattttaaaacaca
caaatcaaagaatcttgagtgtccctttattttccttaataatactggca
cattggttttgattagtcctttctaaaattgtagaatgtcacagggccca
taatttgttgcctgactgcttactggaaaatatttatgttggtacatata
accagcatatagcaagtttagttgactctgttggtcttcttgtggtgtcc
ttgatccctactacttgctcacgtctatcccctactacttgcacgcatct
atccccagtcttccataggactttgcagctctacctaaagtttggctgtg
ggactctgcatctgtgtccatcagctgctggatgaagcctctcaggagaa
agttatgcaaagttcctgtttgcagcatagcagagtatcattagtagttc
ccaggtggtttctcacataggtgagatcattggggcgaacactactgctg
gttcctcagtctctactttcaatttttgtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_80316457_80317518
seq2: B6Ng01-078M05.b_44_1086

seq1  GAATTCTCAACCAAGGGATACCGAATGACTAATAAACACCTAAAGAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAACCAAGGGATACCGAATGACTAATAAACACCTAAAGAAATG  50

seq1  CTCAACACCTTTAGTTACTAGGGAAAAGCAAATCAAAACAACCATAACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACACCTTTAGTTACTAGGGAAAAGCAAATCAAAACAACCATAACAC  100

seq1  TATACCTCAAACCAGTCAGAATGGCTAAAACCAAAAACTCAGGTGAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTCAAACCAGTCAGAATGGCTAAAACCAAAAACTCAGGTGAGAGC  150

seq1  AGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG  200

seq1  GGATTCCAAGCTGGTACAACCACTCTGGAAATCAGTTTGGCAGTTCCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCCAAGCTGGTACAACCACTCTGGAAATCAGTTTGGCAGTTCCTCA  250

seq1  GAAAATTGGACATAGTACTACCGGAGGACCCAGCTATACCACTCCTGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGGACATAGTACTACCGGAGGACCCAGCTATACCACTCCTGGGC  300

seq1  ATATATCCAGAAAATGCTCCAACATGTTATAAGGACACTTGCTTCACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCCAGAAAATGCTCCAACATGTTATAAGGACACTTGCTTCACTAT  350

seq1  GTTCATAACAGCCTTATTTATAGCCAGAAGCTGGAAAGAACCTAGATGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAACAGCCTTATTTATAGCCAGAAGCTGGAAAGAACCTAGATGTC  400

seq1  CTTCAACAGAGGAATGGATACTGACAATGTGGTAAAAACAATGAATTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACAGAGGAATGGATACTGACAATGTGGTAAAAACAATGAATTCAC  450

seq1  GAAATTCTTAGGCAAATGGATTGAACAAGTTTTTTTTTCCTTATTATAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCTTAGGCAAATGGATTGAACAAGTTTTTTTTTCCTTATTATAAC  500

seq1  TTCTTTTGTTAAGAATCCAATGCAGAGGCAGAGGCAGGTGGATTTCTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGTTAAGAATCCAATGCAGAGGCAGAGGCAGGTGGATTTCTGAG  550

seq1  TTTGAGGCCAGCCTGGTCTACAAAGTGAGTGCCAGGACAGCCAGGGCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGCCAGCCTGGTCTACAAAGTGAGTGCCAGGACAGCCAGGGCTAC  600

seq1  ACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAA  650
      ||||||||||||||||||||||||||     || |   |  |||   | |
seq2  ACAGAGAAACCCTGTCTCGAAAAACC-TGTTAAGACTGACTAAAGGTATA  649

seq1  AAAAAAAAAAAAAAAAAAAAAAAAATCTAATGCAACTTAGAATTACTATA  700
      ||||||||||| | | ||||| |  |||||||||||||||||||||||||
seq2  AAAAAAAAAAACACAGAAAAACATTTCTAATGCAACTTAGAATTACTATA  699

seq1  AATGAATGTAAACTAGAAGTTACCTGTGTATTATTGCCTAACTACATTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGTAAACTAGAAGTTACCTGTGTATTATTGCCTAACTACATTAT  749

seq1  TCATATGCTAGCCAGTCATTTTTATCACAGTGAATTTCCTAGCCTTTTCA  800
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCATATGCTAGCCAGTCATTTTTATCACAGTG-ATTTCCTAGCCTTTTCA  798

seq1  ACTTTTCAATACCTTTCCGAGATTACCATAATACATTTCTTTTTTTTTCT  850
      ||||||||||||||||||||||||||||||||||||||| |||||||   
seq2  ACTTTTCAATACCTTTCCGAGATTACCATAATACATTTCGTTTTTTT--C  846

seq1  TTTTTTAAAATTAGGTATTTTCTTCATTTACATTTCCAGTACTATCCCAA  900
      |||||||||||||||||||||||||||||||||||||||||||||| | |
seq2  TTTTTTAAAATTAGGTATTTTCTTCATTTACATTTCCAGTACTATCGC-A  895

seq1  AAGTCCCCCATACCCTCCCATCCCACTCCTCTACCCACCCACTCCCACTT  950
      |||| ||||||||||| |||||||||| ||||| ||| ||||| | ||||
seq2  AAGT-CCCCATACCCT-CCATCCCACT-CTCTA-CCAACCACTACTACTT  941

seq1  CTTGGCCCTGGCGTTCCCCTATACTGAGGCATATAAAGTTTGCACGACCA  1000
      ||||||||||||||| ||||||||||| ||||||||   |||||||| ||
seq2  CTTGGCCCTGGCGTT-CCCTATACTGA-GCATATAA--GTTGCACGA-CA  986

seq1  ATGGGCCTCTGTTTCCACTGATGGCCTATTAGGTCATCTTCTGATACATA  1050
      ||||| |||||||||| ||||| | |||||| |||||||||||||||| |
seq2  ATGGG-CTCTGTTTCC-CTGAT-GACTATTA-GTCATCTTCTGATACA-A  1031

seq1  TGCAGCTAGAGA  1062
      ||||||||||||
seq2  TGCAGCTAGAGA  1043

seq1: chr5_80431154_80432293
seq2: B6Ng01-078M05.g_69_1199 (reverse)

seq1  GGACAAAAAT--GAAGTAGAGACTGAGGAAACAGCAGATTAGTGTCTGCC  48
      ||||||||||   ||||||||||||||||| ||||||  ||||||  |||
seq2  GGACAAAAATTGAAAGTAGAGACTGAGGAACCAGCAG--TAGTGTTCGCC  48

seq1  CCAAATTGATACTCACCCTATGTGAAGAACCAACCTGTG-ACTACTAATG  97
      ||||  |||| |||| |||||||| |||| | ||||| | ||||||||||
seq2  CCAA--TGAT-CTCA-CCTATGTG-AGAAACCACCTGGGAACTACTAATG  93

seq1  ATACTCTGCTATGCTTGCATACAGGAACTTTGCATAACTGTCTCCTGAGA  147
      |||||||||||||| |||| ||||||||||||||||||| ||||||||||
seq2  ATACTCTGCTATGC-TGCAAACAGGAACTTTGCATAACTTTCTCCTGAGA  142

seq1  GGCTTCATCCAGCAGCTGATGGACACAGATGCAGAGTCCCACAGCCAAAC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCATCCAGCAGCTGATGGACACAGATGCAGAGTCCCACAGCCAAAC  192

seq1  TTTAGGTAGAGCCTGCAAAGTCCTATGGAAGACTGGGGGATAGATGCGTG  247
      ||||||||||| |||||||||||||||||||||| |||||||||||||||
seq2  TTTAGGTAGAG-CTGCAAAGTCCTATGGAAGACT-GGGGATAGATGCGTG  240

seq1  CAAGTAGTAGGGGGATAGACGTGAGCAAGTAGTAGGGATCAAGGACACCA  297
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGTA-GGGGATAGACGTGAGCAAGTAGTAGGGATCAAGGACACCA  289

seq1  CAAGAAGACCAACAGAGTCAACTAAACTTGCTATATGCTGGTTATATGTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAAGAAGACCAACAGAGTCAACTAAACTTGCTATATGCTGGTTATATGT-  338

seq1  ACCAACATAAATATTTTCCAGTAAGCAGTCAGGCAACAAATTATGGGCCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACATAAATATTTTCCAGTAAGCAGTCAGGCAACAAATTATGGGCCC  388

seq1  TGTGACATTCTACAATTTTAGAAAGGACTAATCAAAACCAATGTGCCAGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACATTCTACAATTTTAGAAAGGACTAATCAAAACCAATGTGCCAGT  438

seq1  ATTATTAAGGAAAATAAAGGGACACTCAAGATTCTTTGATTTGTGTGTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAAGGAAAATAAAGGGACACTCAAGATTCTTTGATTTGTGTGTTT  488

seq1  TAAAATGAGAATATGAAAACACATCTATGAGATAGCGAAGTCAAATTTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGAGAATATGAAAACACATCTATGAGATAGCGAAGTCAAATTTTA  538

seq1  AGTCCAAGGGAGTCTTAGAACTGCAGAGGTCTTGGGAAACATTCTTTGCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAAGGGAGTCTTAGAACTGCAGAGGTCTTGGGAAACATTCTTTGCC  588

seq1  ACACATGGTAGGATCCTGATTGTGCTGTGGCAAAAGAGTAATAATTTGCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGGTAGGATCCTGATTGTGCTGTGGCAAAAGAGTAATAATTTGCT  638

seq1  AGATTAAAGGACATTTTGGATGAATATAAAGTGTGCCATATGTTAACTGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAAGGACATTTTGGATGAATATAAAGTGTGCCATATGTTAACTGA  688

seq1  ATTGATAATATTAGTTTCTGTGATATTCACCACAAATACTCTTTTTAAAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATAATATTAGTTTCTGTGATATTCACCACAAATACTCTTTTTAAAC  738

seq1  ATATTCTTGGCTTCCAAAGTATACACTTCCAGTACATTGCCAATGTTGTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTTGGCTTCCAAAGTATACACTTCCAGTACATTGCCAATGTTGTG  788

seq1  GTTGATTGAAGTGGGAGTTTTTTCCAACTGTAATGCTCATCAAAGAAAAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTGAAGTGGGAGTTTTTTCCAACTGTAATGCTCATCAAAGAAAAC  838

seq1  TGACACAAACCAAATATATAAATATGAATGAATGATTACATATCTATAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACAAACCAAATATATAAATATGAATGAATGATTACATATCTATAAA  888

seq1  TTGGTCTACTACTGCCATTAAATACAAGAATATAAAATTACAGAAACATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTACTACTGCCATTAAATACAAGAATATAAAATTACAGAAACATT  938

seq1  TCACTATGTTTTGTTAGGGATTCTGGAACAGATTTGCAATCTGAGGGAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATGTTTTGTTAGGGATTCTGGAACAGATTTGCAATCTGAGGGAAA  988

seq1  TACACAAGTAAATATGTAGATATAGAGATATAGAAATATAGAGATATGTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAGTAAATATGTAGATATAGAGATATAGAAATATAGAGATATGTA  1038

seq1  GACTACACAATGGGTTATCAAAGTTTTCAGCTGGACTAGAAAGATGCACA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACACAATGGGTTATCAAAGTTTTCAGCTGGACTAGAAAGATGCACA  1088

seq1  GATAAAAATATGTGGGTGTATCTATGAATTGCCTCAGGAATTC  1140
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAATATGTGGGTGTATCTATGAATTGCCTCAGGAATTC  1131