BAC Information

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BAC

Clone NameB6Ng01-078N11
Chromosome5 (Build37)
Map Location 18,396,696 - 18,397,861
singlet/doubletsinglet
Overlap genenone
Upstream geneGnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078N11.bB6Ng01-078N11.g
ACCDH894431DH894432
length1,1451,142
definitionDH894431|Mus musculus domesticus DNA, BAC clone: B6Ng01-078N11, 5' end.DH894432|Mus musculus domesticus DNA, BAC clone: B6Ng01-078N11, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttttaagacaatctatgcaaataactgtttatttttatcataaa
atatttaaaggttaaggtggtaaagaataatttcagagagccacctggaa
aaaattaagaacatttatgccaatcaagttctgaagccattcttctcagg
agttgaatttagtgaagtgacaaaaaataatcttttgagtaaggaatatg
taaagataatctttgattttcattttaatttcattcaacaggcatatatt
ctttaaataattaatatgtttctttttattcatctatgtttacaattaat
aatacagataaacttcataagtaacatataaacacaataataatttttca
tgcatataagcacacatgaaaataattttcaggaaaacaagcatatatta
tttaatatattcatgatgagaaggataaaataagataaaatataatttca
catactggaaaatacaaatttggagaaatggaacaatattcttaatatta
attaagtaaatctaatttgtatttaaaaactatgtcactttaaacccaaa
gagactattttaattatattatatgactatgtacctctgatatgctattt
ataaaatattagtgctttaaattttagatatgtgtgtatttcatgttttg
aggcaaggtctcatataatgaagactagtctcaggtttagcttatgatag
ccttgaactattcatccacctacttcagcctctcaagtataggtatcata
ggccagcctgagtcaccatattctgaaactgtatacttttatcattttaa
atttgctgttttactaaagctttgctcctattacatttcacttcttcaaa
aagaatgctttcagaataatttattaaatattttctgaatatctgaacgg
aaatttcttagaaattccaaatgtaaaaagaatggaactgggcatctcaa
ctcctcatatttctcagtacacatcatattcatgcgtgatgcattagtta
cttttctgttgctgtgatagaatactatgacacaaagcacttgagagtat
catctagctcatggtttcagaggtatagcatctatatggtggagaagtca
tgtaacgaagaaagcagagcagagcaactgattgtcaatttgagc
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacaggctcccaa
tgagagctagagaagtacccaagagctaaagggatcttcaccctataggt
ggacacattatgactacagtaccctgagctctgacttctagctgcataat
gtatcaaagatgctagtcgcatcactgaaagagaggcccatggacccgca
ccatgcccgtacagggacgcaagctatgaaatatgtgtgtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18396696_18397861
seq2: B6Ng01-078N11.b_47_1191

seq1  GAATTCTTTTAAGACAATCTATGCAAATAACTGTTTATTTTTATCATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAAGACAATCTATGCAAATAACTGTTTATTTTTATCATAAA  50

seq1  ATATTTAAAGGTTAAGGTGGTAAAGAATAATTTCAGAGAGCCACCTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAAAGGTTAAGGTGGTAAAGAATAATTTCAGAGAGCCACCTGGAA  100

seq1  AAAATTAAGAACATTTATGCCAATCAAGTTCTGAAGCCATTCTTCTCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAGAACATTTATGCCAATCAAGTTCTGAAGCCATTCTTCTCAGG  150

seq1  AGTTGAATTTAGTGAAGTGACAAAAAATAATCTTTTGAGTAAGGAATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAATTTAGTGAAGTGACAAAAAATAATCTTTTGAGTAAGGAATATG  200

seq1  TAAAGATAATCTTTGATTTTCATTTTAATTTCATTCAACAGGCATATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATAATCTTTGATTTTCATTTTAATTTCATTCAACAGGCATATATT  250

seq1  CTTTAAATAATTAATATGTTTCTTTTTATTCATCTATGTTTACAATTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAATAATTAATATGTTTCTTTTTATTCATCTATGTTTACAATTAAT  300

seq1  AATACAGATAAACTTCATAAGTAACATATAAACACAATAATAATTTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGATAAACTTCATAAGTAACATATAAACACAATAATAATTTTTCA  350

seq1  TGCATATAAGCACACATGAAAATAATTTTCAGGAAAACAAGCATATATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATAAGCACACATGAAAATAATTTTCAGGAAAACAAGCATATATTA  400

seq1  TTTAATATATTCATGATGAGAAGGATAAAATAAGATAAAATATAATTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATATTCATGATGAGAAGGATAAAATAAGATAAAATATAATTTCA  450

seq1  CATACTGGAAAATACAAATTTGGAGAAATGGAACAATATTCTTAATATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGGAAAATACAAATTTGGAGAAATGGAACAATATTCTTAATATTA  500

seq1  ATTAAGTAAATCTAATTTGTATTTAAAAACTATGTCACTTTAAACCCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTAAATCTAATTTGTATTTAAAAACTATGTCACTTTAAACCCAAA  550

seq1  GAGACTATTTTAATTATATTATATGACTATGTACCTCTGATATGCTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTATTTTAATTATATTATATGACTATGTACCTCTGATATGCTATTT  600

seq1  ATAAAATATTAGTGCTTTAAATTTTAGATATGTGTGTATTTCATGTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATATTAGTGCTTTAAATTTTAGATATGTGTGTATTTCATGTTTTG  650

seq1  AGGCAAGGTCTCATATAATGAAGACTAGTCTCAGGTTTAGCTTATGATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGGTCTCATATAATGAAGACTAGTCTCAGGTTTAGCTTATGATAG  700

seq1  CCTTGAACTATTCATCCACCTACTTCAGCCTCTCAAGTATAGGTATCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAACTATTCATCCACCTACTTCAGCCTCTCAAGTATAGGTATCATA  750

seq1  GGCCAGCCTGAGTCACCATATTCTGAAACTGTATACTTTTATCATTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCTGAGTCACCATATTCTGAAACTGTATACTTTTATCATTTTAA  800

seq1  ATTTGCTGTTTTACTAAGGCTTTGCTCCTATTACATTTCACTTCTTCAAA  850
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATTTGCTGTTTTACTAAAGCTTTGCTCCTATTACATTTCACTTCTTCAAA  850

seq1  AAGAATGCTTTCAGAATAATTTATTAAATATTTTCTGAATATCTGAACGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGCTTTCAGAATAATTTATTAAATATTTTCTGAATATCTGAACGG  900

seq1  AAATTTCTTAGAAATTCCAAATGTAAAAAAGAATGGAACTGGGCATCTCA  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAATTTCTTAGAAATTCCAAATGT-AAAAAGAATGGAACTGGGCATCTCA  949

seq1  ACTCCTCATATTTCCTCAGTACACATCATATTCATGCGTGATGCATTAGT  1000
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACTCCTCATATTT-CTCAGTACACATCATATTCATGCGTGATGCATTAGT  998

seq1  TACTTTTCTGTTGCTGTGATAGAATACTATGACACAAAGCAACTTGAAGA  1050
      |||||||||||||||||||||||||||||||||||||||| ||||||   
seq2  TACTTTTCTGTTGCTGTGATAGAATACTATGACACAAAGC-ACTTGA--G  1045

seq1  AGTATTCATCTTAGCTCATGGTTTCAGAAGTATAGCATCTATAATGGTGG  1100
      |||| ||||| ||||||||||||||||| ||||||||||||| |||||||
seq2  AGTA-TCATC-TAGCTCATGGTTTCAGAGGTATAGCATCTAT-ATGGTGG  1092

seq1  AGAAGTCATGGTAAC-AGGAAAGAAAAGCAGGAGGCAAGAGCAAACATGA  1149
      ||||||||| ||||| | ||||| | |||        |||||||   |||
seq2  AGAAGTCAT-GTAACGAAGAAAGCAGAGC--------AGAGCAA--CTGA  1131

seq1  TTGTACAAATTTTGAGC  1166
      |||| |||  |||||||
seq2  TTGT-CAA--TTTGAGC  1145