BAC Information

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BAC

Clone NameB6Ng01-079A06
Chromosome5 (Build37)
Map Location 66,299,760 - 66,458,999
singlet/doubletdoublet
Overlap geneLOC626641, EG666827, Chrna9, 9130230L23Rik, BC013481
Upstream geneTlr1, Tlr6, 9130005N14Rik, Tmem156, Klhl5, Wdr19, Rfc1, Klb, Rpl9, Lias, Ugdh, 1110003E01Rik, 4930589O11Rik, Hip2, 9030416H16Rik, 1700022K14Rik, LOC384261, B3bp, LOC100041809, Rhoh
Downstream geneLOC626714, LOC666854, LOC100042394, Nsun7, Apbb2, Uchl1, LOC100041876, 3732412D22Rik, LOC624662
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079A06.bB6Ng01-079A06.g
ACCDH894555DH894556
length839551
definitionDH894555|Mus musculus domesticus DNA, BAC clone: B6Ng01-079A06, 5' end.DH894556|Mus musculus domesticus DNA, BAC clone: B6Ng01-079A06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,299,760 - 66,300,598)(66,458,443 - 66,458,999)
sequence
gaattccaattcctcggtggtccattgctaccatagtctgagagccaaag
gggttaggatgggggacacacatatctttttagaagattgttgttccggc
cacaggcaggttacaatccctactttctttgtcttgagtgattatgacat
catgttatgattacataatgaaataccaatagctgaataactcattaatc
aagtgtgatagttactgcaatagcattgaaaagaaaaattgtcccagtat
gagactaggagatcccctgttttgtgaggaatgtaattgatgactttctt
ctgggaaggaaacccttgctcccaatgaaatgcctgactattttctgaca
gagagcaatggcatgaagccttgttctgggaagcccattgtaccaggcag
attgccagaccatagtccacgctgcctggccttcccttctcctacaatat
gctcttgcaaagtgtaaatctttgaactggattcccagaggctcccctcc
ctgcagaatgactgcaacacagtgatggtcaccagaaaggagggagagct
cgttctgatgggttggtggagtgagtgagtcagggaccctgagaaagtgt
tgtgtgatattcataactcagagtctccatcataagaccttgagaaacat
caggcatgctggcacatgtctttaatccaactacttgggagtcaaaggca
ggtggagctctgtgagttcaagaccagcttggtctatgttgtaagttcca
ggccagccatgactacatagtgagactgttttgagggagagagagggaga
gagagagagagagagagagagagaggaagaggaagaaga
actgtctaccatactccaaagcctgttttctttctgaggcttagtcctag
gcttgctgtgtgtaggtggtctcttgccaatatcagagagcatcgtcggt
gtggagattagaagactgaggaatagctggaagggaaagatgaggcaggt
ggctgctgagtgaggctcagacaagaggctaattactacagcagtgccct
cgcgctgggctcccacccccaccctcagcacgtgcacatgggcacagata
ccgtgaggggacagtcacacaggggctgctgagcggacatggaccagaga
aacccttttgttgcacttctattcagtgtgagaatgacagggctgggaca
cttagccattcacccaggcctaaaaatagtgtcagaatggagaagtctct
ggtgttctacatggtaagcatttccttataaatgtttgagtgtgaaatga
gatggggggaggaatatacaacctgagccttccagctcacagagccgaat
gcggaagttttattaagaaaagaacagaaagggtgggtgggtgggtgggt
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_66299760_66300598
seq2: B6Ng01-079A06.b_45_883

seq1  GAATTCCAATTCCTCGGTGGTCCATTGCTACCATAGTCTGAGAGCCAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATTCCTCGGTGGTCCATTGCTACCATAGTCTGAGAGCCAAAG  50

seq1  GGGTTAGGATGGGGGACACACATATCTTTTTAGAAGATTGTTGTTCCGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAGGATGGGGGACACACATATCTTTTTAGAAGATTGTTGTTCCGGC  100

seq1  CACAGGCAGGTTACAATCCCTACTTTCTTTGTCTTGAGTGATTATGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCAGGTTACAATCCCTACTTTCTTTGTCTTGAGTGATTATGACAT  150

seq1  CATGTTATGATTACATAATGAAATACCAATAGCTGAATAACTCATTAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTATGATTACATAATGAAATACCAATAGCTGAATAACTCATTAATC  200

seq1  AAGTGTGATAGTTACTGCAATAGCATTGAAAAGAAAAATTGTCCCAGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGATAGTTACTGCAATAGCATTGAAAAGAAAAATTGTCCCAGTAT  250

seq1  GAGACTAGGAGATCCCCTGTTTTGTGAGGAATGTAATTGATGACTTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTAGGAGATCCCCTGTTTTGTGAGGAATGTAATTGATGACTTTCTT  300

seq1  CTGGGAAGGAAACCCTTGCTCCCAATGAAATGCCTGACTATTTTCTGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAGGAAACCCTTGCTCCCAATGAAATGCCTGACTATTTTCTGACA  350

seq1  GAGAGCAATGGCATGAAGCCTTGTTCTGGGAAGCCCATTGTACCAGGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAATGGCATGAAGCCTTGTTCTGGGAAGCCCATTGTACCAGGCAG  400

seq1  ATTGCCAGACCATAGTCCACGCTGCCTGGCCTTCCCTTCTCCTACAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCAGACCATAGTCCACGCTGCCTGGCCTTCCCTTCTCCTACAATAT  450

seq1  GCTCTTGCAAAGTGTAAATCTTTGAACTGGATTCCCAGAGGCTCCCCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGCAAAGTGTAAATCTTTGAACTGGATTCCCAGAGGCTCCCCTCC  500

seq1  CTGCAGAATGACTGCAACACAGTGATGGTCACCAGAAAGGAGGGAGAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAATGACTGCAACACAGTGATGGTCACCAGAAAGGAGGGAGAGCT  550

seq1  CGTTCTGATGGGTTGGTGGAGTGAGTGAGTCAGGGACCCTGAGAAAGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTGATGGGTTGGTGGAGTGAGTGAGTCAGGGACCCTGAGAAAGTGT  600

seq1  TGTGTGATATTCATAACTCAGAGTCTCCATCATAAGACCTTGAGAAACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGATATTCATAACTCAGAGTCTCCATCATAAGACCTTGAGAAACAT  650

seq1  CAGGCATGCTGGCACATGTCTTTAATCCAACTACTTGGGAGTCAAAGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATGCTGGCACATGTCTTTAATCCAACTACTTGGGAGTCAAAGGCA  700

seq1  GGTGGAGCTCTGTGAGTTCAAGACCAGCTTGGTCTATGTTGTAAGTTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGCTCTGTGAGTTCAAGACCAGCTTGGTCTATGTTGTAAGTTCCA  750

seq1  GGCCAGCCATGACTACATAGTGAGACTGTTTTGAGGGAGAGAGAGGGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCATGACTACATAGTGAGACTGTTTTGAGGGAGAGAGAGGGAGA  800

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGGAAGAGGAAGAAGA  839
      |||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGGAAGAGGAAGAAGA  839

seq1: chr5_66458443_66458999
seq2: B6Ng01-079A06.g_68_624 (reverse)

seq1  CACCCACCCACCCACCCACCCTTTCTGTTCTTTTCTTAATAAAACTTCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACCCACCCACCCACCCTTTCTGTTCTTTTCTTAATAAAACTTCCG  50

seq1  CATTCGGCTCTGTGAGCTGGAAGGCTCAGGTTGTATATTCCTCCCCCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCGGCTCTGTGAGCTGGAAGGCTCAGGTTGTATATTCCTCCCCCCAT  100

seq1  CTCATTTCACACTCAAACATTTATAAGGAAATGCTTACCATGTAGAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTCACACTCAAACATTTATAAGGAAATGCTTACCATGTAGAACAC  150

seq1  CAGAGACTTCTCCATTCTGACACTATTTTTAGGCCTGGGTGAATGGCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACTTCTCCATTCTGACACTATTTTTAGGCCTGGGTGAATGGCTAA  200

seq1  GTGTCCCAGCCCTGTCATTCTCACACTGAATAGAAGTGCAACAAAAGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCCAGCCCTGTCATTCTCACACTGAATAGAAGTGCAACAAAAGGGT  250

seq1  TTCTCTGGTCCATGTCCGCTCAGCAGCCCCTGTGTGACTGTCCCCTCACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGGTCCATGTCCGCTCAGCAGCCCCTGTGTGACTGTCCCCTCACG  300

seq1  GTATCTGTGCCCATGTGCACGTGCTGAGGGTGGGGGTGGGAGCCCAGCGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGTGCCCATGTGCACGTGCTGAGGGTGGGGGTGGGAGCCCAGCGC  350

seq1  GAGGGCACTGCTGTAGTAATTAGCCTCTTGTCTGAGCCTCACTCAGCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCACTGCTGTAGTAATTAGCCTCTTGTCTGAGCCTCACTCAGCAGC  400

seq1  CACCTGCCTCATCTTTCCCTTCCAGCTATTCCTCAGTCTTCTAATCTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCCTCATCTTTCCCTTCCAGCTATTCCTCAGTCTTCTAATCTCCA  450

seq1  CACCGACGATGCTCTCTGATATTGGCAAGAGACCACCTACACACAGCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGACGATGCTCTCTGATATTGGCAAGAGACCACCTACACACAGCAAG  500

seq1  CCTAGGACTAAGCCTCAGAAAGAAAACAGGCTTTGGAGTATGGTAGACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGACTAAGCCTCAGAAAGAAAACAGGCTTTGGAGTATGGTAGACAG  550

seq1  TGAATTC  557
      |||||||
seq2  TGAATTC  557