BAC Information

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BAC

Clone NameB6Ng01-079B20
Chromosome5 (Build37)
Map Location 148,481,467 - 148,482,679
singlet/doubletsinglet
Overlap geneFlt1
Upstream geneUsp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3, Lnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3
Downstream geneLOC100039825, Pomp, Slc46a3, C130038G02Rik, LOC100041819, Slc7a1, LOC100041842, Ubl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079B20.bB6Ng01-079B20.g
ACCDH894619DH894620
length1,1821,188
definitionDH894619|Mus musculus domesticus DNA, BAC clone: B6Ng01-079B20, 5' end.DH894620|Mus musculus domesticus DNA, BAC clone: B6Ng01-079B20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttgtcctttcttcattatctaaggtatggcttatgatagtaatt
gatttaaaagactgtttttttttttttttttttttttttttggtaacccc
ttgtatgagcaagataaagaaaaatttgctttctcaatgcctataaacat
atatcagtcaatagttcttcaacaaagaatgctaaagaatccaactttat
gtcagtattttgtgcaacaactgctagataaaatttgtaggcaatttcct
gtatccattattcattatcatatggctattttgctggctaaatcagatga
agatactttagagaaaatgtttcaggaaacaaagaattctgccatgctgt
gggttacaggttgctcctgagaaactacagagaaatcgtccaagatcgtt
agtggctgaagcagaattaactctagtagaacaaagtctgcagacaagta
tgtggattgcatagatcccaaacgtgattgtattttgcttattttgcctt
caactttttctcctactagactcatgggaatgggatgggaagatagtact
gtgaaattgatcttcttagcacacaaagtacaaaattaaaagacttacat
agaaacatttctgatttaatcataaaagggagaataagactatgtcagtt
ttcaggaacaaacccagcagaaatcgtacagtaatagtgaaattatgtca
ttataggtaatcagtgaagattggtaaagaacttgtagcaactatttggt
agatattaacaacagatatcctaaaaagcaagcaagcatctttcagttta
taaaaaaggtctccccacatactgtaaaagaagcaccagcccgaagcgcc
tgcattctacactgatggcaaggaagttgacccaaatgagcaaagtaata
caaagcccatatccctcggttaaaaaaacacagttacatggcattctcat
ggtatattagagtttctgactctaatataattactgactctcattgcaga
aagatgctctgtatataaaaactgctgattatcccgatattcagaataac
tgttttttagatcacatcagataaatatatatctaaccgattgttccaca
gttgctagtcattcgcaagaatgacagccacgtgtgaagttgagctcagg
tgttagtaaacaatcctcatagccgtggaatc
gaattctaagagtaactatgttagaaaaaaattcagttctgaggtcagga
cactgtagtatgagtttggggttgaatgaggctcatgaaatgaaacgagg
gggcccaggtggatgccgtgtgtagcgcctctctttttgatctctgcggt
gtgcgatctttctcccattctgtgaaggatgttcaggaggtcctggaaag
atgtcttactcctttgagaaaaaaaaaaaaaaacattgcaagactcagaa
gtattgccttaaatctttcttgactatttgaattatccttttaaagtcat
cttactatttatttttaactttaacaattgacaagctagacatgtgagat
agatagtgcctactatccttgattccttccttgaatcaggaagtgtctgc
tatgcttatttttgagttacatatttgcatggtagtctctatgcatgatc
ttcaattataaaaatgcctaatatttcagaatgattatacatatatgtaa
tagttatatatgtgcagaataattattagtgcttaaatctgagactctaa
ttcaatatctacagctcaaggcctagtttattttggtgtcccaacattat
taattgtatttccatgaccagccacttaatacagacaagttaataaaaaa
aagagagattcagaccacttgaattttcagcatttcctagaatctgacaa
atattttaaaacttcagaactccaatggacctaaaatttcttagttaaaa
tatggcgcacgcctttaatcccagcacttgggaggcagaggcaggcagat
ttctgagttcgaggctagcctggtctacaaagtgagtcccaggacagcca
ggctatacagaagaatccctgtctcgaaaaccaaacaacaataaaaaaat
tgataaatagtgatacaatgaactttgtttcactgaatatatggggtttt
tggttccctgtattcatcttataagcatttgtaatatgtcttgtgcctta
ttacacagtagcatagctattaataacatgccatcatgtctctataatgc
agaagaccgattaaagaacttcagcattagtgaacaaatgaggagaagtt
tgaaagaatgctagttaaacgggtacattggtacgaaggttggagtcccg
cccccattacattggggtttatagtgccttaggcatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_148481467_148482679
seq2: B6Ng01-079B20.g_70_1257 (reverse)

seq1  TGATGCCTATAGC-CTATAAACCACCAATGTAATGTGGTGCTGTGATACT  49
      |||||||||  || ||||||||| ||||||||||| ||    | |  |||
seq2  TGATGCCTAAGGCACTATAAACC-CCAATGTAATGGGG----GCGGGACT  45

seq1  TCCACACTCGTACACATTGTATCATGTTTAAACATAGCCATCTCTTCAAA  99
       | ||  |||||| || |||| |  ||||||   ||||  ||| ||||||
seq2  CCAACCTTCGTAC-CAATGTA-CCCGTTTAA--CTAGCATTCT-TTCAAA  90

seq1  CATTTCTCATCTATTTGTGTCACTAATGCTGAGTATCCTTTCATCGGTCT  149
      |  ||||| || |||||| |||||||||||||   | |||| ||||||||
seq2  C--TTCTCCTC-ATTTGT-TCACTAATGCTGA-AGTTCTTTAATCGGTCT  135

seq1  TCTTGCATTATAGA-ACATG-TGGC-TGTTATTTATAGCTATGCTACTGT  196
      || ||||||||||| ||||| |||| ||||||| ||||||||||||||||
seq2  TC-TGCATTATAGAGACATGATGGCATGTTATTAATAGCTATGCTACTGT  184

seq1  GTAATAGGCCACCAGGACATATTACAAATGCTTTATAAGAATGAATTACA  246
      |||||| | || || |||||||||||||||| ||||||| ||||| ||||
seq2  GTAATAAGGCA-CAAGACATATTACAAATGC-TTATAAG-ATGAA-TACA  230

seq1  GGGGAAACAAAAACCACAGTATTACTCAGTTGAAACAAAGTTCATTTGTA  296
       ||||| |||||||| || || || |||| |||||||||||||| |||||
seq2  -GGGAACCAAAAACCCCA-TA-TATTCAG-TGAAACAAAGTTCA-TTGTA  275

seq1  TCAACTATTTTATCAATTTTTTTTATTTGTTTGTTTTGTTTTTCGAGACA  346
      || |||| |||||||||||||||   |||||   |||| |||||||||||
seq2  TC-ACTA-TTTATCAATTTTTTT--ATTGTT--GTTTGGTTTTCGAGACA  319

seq1  GGGATTC-TCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCA  395
      ||||||| ||||||||| |||||||||||||| |||||||||||||||||
seq2  GGGATTCTTCTGTATAG-CCTGGCTGTCCTGGGACTCACTTTGTAGACCA  368

seq1  GGCTAGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGG  418

seq1  GATTAAAGGCGTGCGCCATATTTTAACTAAGAAATTTTAGGTCCATTGGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGCGTGCGCCATATTTTAACTAAGAAATTTTAGGTCCATTGGA  468

seq1  GTTCTGAAGTTTTAAAATATTTGTCAGATTCTAGGAAATGCTG-AAATTC  544
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTTCTGAAGTTTTAAAATATTTGTCAGATTCTAGGAAATGCTGAAAATTC  518

seq1  AAGTGGTCTGAATCTCTC-TTTTTTTATTAACTTGTCTGTATTAAGTGGC  593
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAGTGGTCTGAATCTCTCTTTTTTTTATTAACTTGTCTGTATTAAGTGGC  568

seq1  TGGTCATGGAAATACAATTAATAATGTTGGGACACCAAAATAAACTAGGC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATGGAAATACAATTAATAATGTTGGGACACCAAAATAAACTAGGC  618

seq1  CTTGAGCTGTAGATATTGAATTAGAGTCTCAGATTTAAGCACTAATAATT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCTGTAGATATTGAATTAGAGTCTCAGATTTAAGCACTAATAATT  668

seq1  ATTCTGCACATATATAACTATTACATATATGTATAATCATTCTGAAATAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCACATATATAACTATTACATATATGTATAATCATTCTGAAATAT  718

seq1  TAGGCATTTTTATAATTGAAGATCATGCATAGAGACTACCATGCAAATAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATTTTTATAATTGAAGATCATGCATAGAGACTACCATGCAAATAT  768

seq1  GTAACTCAAAAATAAGCATAGCAGACACTTCCTGATTCAAGGAAGGAATC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCAAAAATAAGCATAGCAGACACTTCCTGATTCAAGGAAGGAATC  818

seq1  AAGGATAGTAGGCACTATCTATCTCACATGTCTAGCTTGTCAATTGTTAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATAGTAGGCACTATCTATCTCACATGTCTAGCTTGTCAATTGTTAA  868

seq1  AGTTAAAAATAAATAGTAAGATGACTTTAAAAGGATAATTCAAATAGTCA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAAATAAATAGTAAGATGACTTTAAAAGGATAATTCAAATAGTCA  918

seq1  AGAAAGATTTAAGGCAATACTTCTGAGTCTTGCAATGTTTTTTTTTTTTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATTTAAGGCAATACTTCTGAGTCTTGCAATGTTTTTTTTTTTTT  968

seq1  TTCTCAAAGGAGTAAGACATCTTTCCAGGACCTCCTGAACATCCTTCACA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAAGGAGTAAGACATCTTTCCAGGACCTCCTGAACATCCTTCACA  1018

seq1  GAATGGGAGAAAGATCGCACACCGCAGAGATCAAAAAGAGAGGCGCTACA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGAGAAAGATCGCACACCGCAGAGATCAAAAAGAGAGGCGCTACA  1068

seq1  CACGGCATCCACCTGGGCCCCCTCGTTTCATTTCATGAGCCTCATTCAAC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGCATCCACCTGGGCCCCCTCGTTTCATTTCATGAGCCTCATTCAAC  1118

seq1  CCCAAACTCATACTACAGTGTCCTGACCTCAGAACTGAATTTTTTTCTAA  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACTCATACTACAGTGTCCTGACCTCAGAACTGAATTTTTTTCTAA  1168

seq1  CATAGTTACTCTTAGAATTC  1213
      ||||||||||||||||||||
seq2  CATAGTTACTCTTAGAATTC  1188