BAC Information

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BAC

Clone NameB6Ng01-079C01
Chromosome5 (Build37)
Map Location 76,645,224 - 76,791,871
singlet/doubletdoublet
Overlap geneClock, Ube2n-ps1, EG665055, Pdcl2, Pafah1b1-ps3, Nmu
Upstream geneLOC100039143, LOC100039158, LOC100039169, Kit, EG664874, Kdr, Gabarapl2-ps5_758.1, Srd5a2l, Tmem165, Apc-ps1
Downstream geneLOC665065, EG639545, Exoc1, Cep135, LOC100039117, A730089K16Rik, LOC665107, LOC100039299, C530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079C01.bB6Ng01-079C01.g
ACCDH894629DH894630
length1,1031,058
definitionDH894629|Mus musculus domesticus DNA, BAC clone: B6Ng01-079C01, 5' end.DH894630|Mus musculus domesticus DNA, BAC clone: B6Ng01-079C01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,645,224 - 76,646,318)(76,790,807 - 76,791,871)
sequence
gaattcaaacctgcacaacattctcaaagtcatcacggttccatcattgt
ctgaacagggagaggagtttggggtggggactattaactactggactatc
ttcatggcattctaagcaaacccctggcagtggtgtgccctctgtaatat
ttgatgcaggcacagacccactaaagctaccaacactgttagtgctcttc
ggattcagtaaagatctggttgatagctgagcttgttagcatttggcaat
atactctttctatcaaaaaatacctgggcaaagaaactgtcagaattggc
tgtgtccctatgaccatttcccactggctggtatttaatggacatctgaa
gcactgggcagcacttccctaccgtctcatcaagggactgaacactcaag
accaccctcgtgaaactgttcaacttctgaccgcatgccaactgagcgat
tctttctggccatccccttcctctcgcatgtcagagaggaagtgtgtgtg
ctactgtggctggaccttggaagggtcagtcaggctgtcagtcctgtgcc
gaggaagctgctgttgctgctgaggctggtgttgctggtggtgcgaagga
gggaaagtgctctgttgtagtggaaaggcagcagagaggatgagctgtgt
cgaaggattcccgtggagcaacctagatgtctaaaaacaaaaaaggatga
tgcagtctggcttcctgccttcacactcgtcagttcacactgcccacagc
ccacagacacagggctttaaactctcattctgtttgctaatctaaaaact
atttttggaaaacaaaaccttgccttctttctgaacacgtaagatttgac
ttttttgaggatttcttgatgggaatttcatggtacaaagtattaatttg
tcttgaagacaagccacatattttttattttcctacagcctaaattctta
gcagtaaactaagagcacagctgtgcttggataggacaccgaacacttgc
ctggtcagactgaacagtgcccacaagtcttgcctgttggttaagaatca
attgtacttccagtgtggaaagaatagacaggatttcctgaggctcacag
cca
gaattctccgattgctgcccaggtcagtaggctgttcattttttagaaat
gttgaggatttaaaacatcacaaaccgcagagaactgtggaagctcatag
atgagccagccctcaattagagctggacagagacgagtattcttttcctg
gcctgtctttgttgccttcatttcatcattttaatttttgttcctgagac
attgaaggagaacaggctcccttgtctgaaagcctgttcaaaagagacgg
tggcagggacagtatgatagcccatctgataaaggtgcctactaccaagc
atgaagaccaaagtttaaggctgggtgtggtggcgcacacctttaatccc
agcacgtggaaggcagaggcagatggatctctgtgagttccaggccagct
tggtctacaaagtgagtccaggacagtcagggttacacagagaaaccctg
tctcaaaagagagagagagagagagagagagagagagagagagagagaga
gagagagagagagagagagaagaaagaaaaaacaaagaaaagaaaagaga
acttgagctcaatgcccagggctcacagttgtcctctgaaataaagaaaa
aacaaattgcaaggtggcaaccacacagtagcatattattcttgtgtagt
agtgattcaccatgatttatacaagctaaattatccttttctcttttaaa
tacttcattagaaatattagaatgataatttcatttaccttcttaaggaa
gaaaataattataagggttctttgttttctttttaaagaattcagatgca
actctttgaatatcattaaaattctttattgtgatcataaaaaaataaaa
agaagtcaggtttatttactatattgctaagagatcagcagccaggcata
gtagaaaactccctgtagccagaaagccatagtcttttatttgtattatt
tatttaagatatatgggtgttttgtctgcatgtatgctgtgcattacctg
tgtgcctggtgaccaagagtcagagagggtgtggcatcccttgggactag
agtcagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_76645224_76646318
seq2: B6Ng01-079C01.b_43_1145

seq1  GAATTCAAACCTGCACAACATTCTCAAAGTCATCACGGTTCCATCATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACCTGCACAACATTCTCAAAGTCATCACGGTTCCATCATTGT  50

seq1  CTGAACAGGGAGAGGAGTTTGGGGTGGGGACTATTAACTACTGGACTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACAGGGAGAGGAGTTTGGGGTGGGGACTATTAACTACTGGACTATC  100

seq1  TTCATGGCATTCTAAGCAAACCCCTGGCAGTGGTGTGCCCTCTGTAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGCATTCTAAGCAAACCCCTGGCAGTGGTGTGCCCTCTGTAATAT  150

seq1  TTGATGCAGGCACAGACCCACTAAAGCTACCAACACTGTTAGTGCTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGCAGGCACAGACCCACTAAAGCTACCAACACTGTTAGTGCTCTTC  200

seq1  GGATTCAGTAAAGATCTGGTTGATAGCTGAGCTTGTTAGCATTTGGCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCAGTAAAGATCTGGTTGATAGCTGAGCTTGTTAGCATTTGGCAAT  250

seq1  ATACTCTTTCTATCAAAAAATACCTGGGCAAAGAAACTGTCAGAATTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTTTCTATCAAAAAATACCTGGGCAAAGAAACTGTCAGAATTGGC  300

seq1  TGTGTCCCTATGACCATTTCCCACTGGCTGGTATTTAATGGACATCTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCCTATGACCATTTCCCACTGGCTGGTATTTAATGGACATCTGAA  350

seq1  GCACTGGGCAGCACTTCCCTACCGTCTCATCAAGGGACTGAACACTCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGGCAGCACTTCCCTACCGTCTCATCAAGGGACTGAACACTCAAG  400

seq1  ACCACCCTCGTGAAACTGTTCAACTTCTGACCGCATGCCAACTGAGCGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCTCGTGAAACTGTTCAACTTCTGACCGCATGCCAACTGAGCGAT  450

seq1  TCTTTCTGGCCATCCCCTTCCTCTCGCATGTCAGAGAGGAAGTGTGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGGCCATCCCCTTCCTCTCGCATGTCAGAGAGGAAGTGTGTGTG  500

seq1  CTACTGTGGCTGGACCTTGGAAGGGTCAGTCAGGCTGTCAGTCCTGTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTGGCTGGACCTTGGAAGGGTCAGTCAGGCTGTCAGTCCTGTGCC  550

seq1  GAGGAAGCTGCTGTTGCTGCTGAGGCTGGTGTTGCTGGTGGTGCGAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGCTGCTGTTGCTGCTGAGGCTGGTGTTGCTGGTGGTGCGAAGGA  600

seq1  GGGAAAGTGCTCTGTTGTAGTGGAAAGGCAGCAGAGAGGATGAGCTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGTGCTCTGTTGTAGTGGAAAGGCAGCAGAGAGGATGAGCTGTGT  650

seq1  CGAAGGATTCCCGTGGAGCAACCTAGATGTCTAAAAAC-AAAAAGGATGA  699
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CGAAGGATTCCCGTGGAGCAACCTAGATGTCTAAAAACAAAAAAGGATGA  700

seq1  TGCAGTCTGGCTTCCTGCCTTCACACTCGTCAGTTCACACTGCCCACAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCTGGCTTCCTGCCTTCACACTCGTCAGTTCACACTGCCCACAGC  750

seq1  CCACAGACACAGGGCTTTAAACTCTCATTCTGTTTGCTAATCTAAAAACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGACACAGGGCTTTAAACTCTCATTCTGTTTGCTAATCTAAAAACT  800

seq1  ATTTTTGGAAAACAAAAACCTTGCCTTCTTTCTGAACACGTAAGATTTGA  849
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGGAAAAC-AAAACCTTGCCTTCTTTCTGAACACGTAAGATTTGA  849

seq1  CTTTTTTGAGGAATTCTTGATGGGAATTTCATGGTACAAAGTA-TAATCT  898
      |||||||||||| |||||||||||||||||||||||||||||| |||| |
seq2  CTTTTTTGAGGATTTCTTGATGGGAATTTCATGGTACAAAGTATTAATTT  899

seq1  GTCTTG-AGACAAGCCACATATTTTT--ATTTCCTACAGGCCCAAATTCT  945
      |||||| |||||||||||||||||||   ||||||||| ||| |||||||
seq2  GTCTTGAAGACAAGCCACATATTTTTTATTTTCCTACA-GCCTAAATTCT  948

seq1  AAGCAGTAAACT-AGAGCACAGCTGTGTCTGGATAGGACA-CGAACAC-T  992
       ||||||||||| ||||||||||||||  ||||||||||| ||||||| |
seq2  TAGCAGTAAACTAAGAGCACAGCTGTGCTTGGATAGGACACCGAACACTT  998

seq1  GCCTGGTCAGACTG-ACAGTGCACACAAGTC-TGCCTGTTGGTAAAGAAT  1040
      |||||||||||||| ||||||| |||||||| ||||||||||| ||||||
seq2  GCCTGGTCAGACTGAACAGTGCCCACAAGTCTTGCCTGTTGGTTAAGAAT  1048

seq1  CAATTGTACTCCCAGTGT-GAGAGATAGAGACAGGATTTCC-GAGGCTCA  1088
      |||||||||| ||||||| || ||| | ||||||||||||| ||||||||
seq2  CAATTGTACTTCCAGTGTGGAAAGA-ATAGACAGGATTTCCTGAGGCTCA  1097

seq1  CCAGCCA  1095
       ||||||
seq2  -CAGCCA  1103

seq1: chr5_76790807_76791871
seq2: B6Ng01-079C01.g_67_1124 (reverse)

seq1  AGCTGGAACTCTAGTCCCAAGGGATGCCACACCCTCTTCTGACCTCCTTG  50
      |||||  ||||||||||||||||||||||||||||| ||||||   ||||
seq2  AGCTG--ACTCTAGTCCCAAGGGATGCCACACCCTC-TCTGAC--TCTTG  45

seq1  GTCACCAGGCACACAGGTAATGCACAGGCATACATGCAGACAAAACACCC  100
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTCACCAGGCACACAGGTAATGCACA-GCATACATGCAGACAAAACACCC  94

seq1  ATATATCTTAAATAAATAAATACAAAT-AAAGACTATGGCTATCTGGCTA  149
      ||||||||||||||||| ||||||||| ||||||||||||| ||||||||
seq2  ATATATCTTAAATAAAT-AATACAAATAAAAGACTATGGCTTTCTGGCTA  143

seq1  CAGGGAGTTATCTACTATTGCCTGGCTGCTGATCTCTTAGCAATATAGTA  199
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  CAGGGAGTTTTCTACTA-TGCCTGGCTGCTGATCTCTTAGCAATATAGTA  192

seq1  AATAAACCTGACTTCTTTTTATTTTTTTATGATCACAATAAAGAATTTTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACCTGACTTCTTTTTATTTTTTTATGATCACAATAAAGAATTTTA  242

seq1  ATGATATTCAAAGAGTTGCATCTGAATTCTTTAAAAAGAAAACAAAGAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATTCAAAGAGTTGCATCTGAATTCTTTAAAAAGAAAACAAAGAAC  292

seq1  CCTTATAATTATTTTCTTCCTTAAGAAGGTAAATGAAATTATCATTCTAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATAATTATTTTCTTCCTTAAGAAGGTAAATGAAATTATCATTCTAA  342

seq1  TATTTCTAATGAAGTATTTAAAAGAGAAAAGGATAATTTAGCTTGTATAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTAATGAAGTATTTAAAAGAGAAAAGGATAATTTAGCTTGTATAA  392

seq1  ATCATGGTGAATCACTACTACACAAGAATAATATGCTACTGTGTGGTTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGTGAATCACTACTACACAAGAATAATATGCTACTGTGTGGTTGC  442

seq1  CACCTTGCAATTTGTTTTTTCTTTATTTCAGAGGACAACTGTGAGCCCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGCAATTTGTTTTTTCTTTATTTCAGAGGACAACTGTGAGCCCTG  492

seq1  GGCATTGAGCTCAAGTTCTCTTTTCTTTTCTTTGTTTTTTCTTTCTTCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTGAGCTCAAGTTCTCTTTTCTTTTCTTTGTTTTTTCTTTCTTCTC  542

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  592

seq1  TCTCTCTCTTTTGAGACAGGGTTTCTCTGTGTAACCCTGACTGTCCTGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTTTTGAGACAGGGTTTCTCTGTGTAACCCTGACTGTCCTGGA  642

seq1  CTCACTTTGTAGACCAAGCTGGCCTGGAACTCACAGAGATCCATCTGCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTTGTAGACCAAGCTGGCCTGGAACTCACAGAGATCCATCTGCCT  692

seq1  CTGCCTTCCACGTGCTGGGATTAAAGGTGTGCGCCACCACACCCAGCCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTCCACGTGCTGGGATTAAAGGTGTGCGCCACCACACCCAGCCTT  742

seq1  AAACTTTGGTCTTCATGCTTGGTAGTAGGCACCTTTATCAGATGGGCTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTGGTCTTCATGCTTGGTAGTAGGCACCTTTATCAGATGGGCTAT  792

seq1  CATACTGTCCCTGCCACCGTCTCTTTTGAACAGGCTTTCAGACAAGGGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGTCCCTGCCACCGTCTCTTTTGAACAGGCTTTCAGACAAGGGAG  842

seq1  CCTGTTCTCCTTCAATGTCTCAGGAACAAAAATTAAAATGATGAAATGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCTCCTTCAATGTCTCAGGAACAAAAATTAAAATGATGAAATGAA  892

seq1  GGCAACAAAGACAGGCCAGGAAAAGAATACTCGTCTCTGTCCAGCTCTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACAAAGACAGGCCAGGAAAAGAATACTCGTCTCTGTCCAGCTCTAA  942

seq1  TTGAGGGCTGGCTCATCTATGAGCTTCCACAGTTCTCTGCGGTTTGTGAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGCTGGCTCATCTATGAGCTTCCACAGTTCTCTGCGGTTTGTGAT  992

seq1  GTTTTAAATCCTCAACATTTCTAAAAAATGAACAGCCTACTGACCTGGGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAATCCTCAACATTTCTAAAAAATGAACAGCCTACTGACCTGGGC  1042

seq1  AGCAATCGGAGAATTC  1065
      ||||||||||||||||
seq2  AGCAATCGGAGAATTC  1058