BAC Information

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BAC

Clone NameB6Ng01-080D07
Chromosome5 (Build37)
Map Location 15,025,710 - 15,026,736
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1
Downstream geneSpeer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080D07.bB6Ng01-080D07.g
ACCDH895408DH895409
length1,079696
definitionDH895408|Mus musculus domesticus DNA, BAC clone: B6Ng01-080D07, 5' end.DH895409|Mus musculus domesticus DNA, BAC clone: B6Ng01-080D07, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtcaatttgatacagagagaacagtacaaagattccgtgaaac
caagatcctgttctttgagacaatcaacaaggtagacttatgcttagcca
aattaactgaaaggtagagagacaatacccagaatagcaaaatcagaaat
gaaacaggagacataacaatggacactgaggtaattgaaagaatcactag
gtcttactgcagaagcctgtactgcaaaaaatagcaaaatccaaatgaaa
tgggtgacttatagacagctatcaattatcaaagttaaatgaagatctgg
taaagtaactaacaggcctataacccctaaggaaatagaaacagtcatca
aaagtcctccactccaaaaaagcccaagggcagaaagttgtagtgcagaa
ttctactagatattcaaaaaagagttagtgaaatactcctcaaatcattc
ataaagtagaaacagaagaaacatagctaaactcattctatgagttcata
gtcaccctggtacagaaaccacacaaagactcaacaaagaaagaggaatt
cagtccaatttctcttttttaaccacttcatactaatttacttatcttca
taataaggaagaatatgtcttccttgtgtatttaaaattatgagattaga
tactgatattggacagaaggtaattgggttcataagaagtgatacataat
agaaaagaacatgttcatggaattggagtcaggactatgctgtgtattgg
ttattgaatattaatatcagagtgacacagttgtgtgtctttaaaaagat
gactggtgggagacactgatcctaaaatgccttctgtattttagtctatt
ttcctagaaaaacataggaaaaaagaatatattggggtacatccaggaaa
caggtctggaagccattacatattcccagaggaaaagtttcaaccagttg
ctaaaagtgtttttaccagtgggatgaaagatatcctttcaatacaattg
tgtgaaatggtgagcaaagctttactattcaccctctttcactttctgtc
tactttggtactcaagaatcccaactttc

gaattccacagtggttgtaccagtttgcaatcccaccagcaatggcgctc
ttctttttgcacatccttgccagcatctgtgatcacctgagcttctgatc
ttagccattctgactggtgtgaggtggaatctcagggtcattttgatttg
tgtttccctgatgactaatgatgttgaacatttctttaggtgcttatcag
ccattcaagtttcctcagttaaaacttctctgtttaggtctgatccccat
ttttaataggattatttagttctcaggagtctaacttcatgagttctttt
tatatattggatattagccctctataggatgaaggattgataacgatctt
ttcccaatctgttggttgcctttttgtcttattgacagttttctttgcct
tagagaagctttgcagttttatgaggtcccattttttgattcttaatctt
tcagcataagccatttttgttctgttcaggaaatttccccccatgcccat
gtgttcaaggctattccccactttctgttttattagtttcagtgaatctg
gttttatatggcggttcttgatccacttggacataagctttgtacaagga
gatatgaatggatccatttgccttcttctacatgataactgccagttgaa
ccagcaccatttgttgaaaatgctgtctttttccaactgaatgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15025710_15026736
seq2: B6Ng01-080D07.b_115_1127 (reverse)

seq1  GAAAGGTTTTGGGATTCTTTGAGTAACCCCAAAGTAGACAGAAAGTGGAA  50
      |||||   ||||||||| |||||||   |||||||||||||||||| |||
seq2  GAAAG---TTGGGATTC-TTGAGTA---CCAAAGTAGACAGAAAGT-GAA  42

seq1  AGAGGGTGAATAGGTAAAGCTTTTGCTCACCCATTTCACACCAATTGTAT  100
      |||||||||||| ||||||| |||||||| |||||||||| |||||||| 
seq2  AGAGGGTGAATA-GTAAAGC-TTTGCTCA-CCATTTCACA-CAATTGTA-  87

seq1  TTGAAAGGATATCTTTCATCCCACCTGGTAAAAACACTTTTAGCAACTGG  150
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTGAAAGGATATCTTTCATCCCA-CTGGTAAAAACACTTTTAGCAACTGG  136

seq1  TTGAAACTTTTCCTCTGGGAATATGTAATGGCTTCCAGACCTGTTTCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACTTTTCCTCTGGGAATATGTAATGGCTTCCAGACCTGTTTCCTG  186

seq1  GATGTACCCCAATATATTCTTTTTTCCTATGTTTTTCTAGGAAAATAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTACCCCAATATATTCTTTTTTCCTATGTTTTTCTAGGAAAATAGAC  236

seq1  TAAAATACAGAAGGCATTTTAGGATCAGTGTCTCCCACCAGTCATCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATACAGAAGGCATTTTAGGATCAGTGTCTCCCACCAGTCATCTTTT  286

seq1  TAAAGACACACAACTGTGTCACTCTGATATTAATATTCAATAACCAATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACACACAACTGTGTCACTCTGATATTAATATTCAATAACCAATAC  336

seq1  ACAGCATAGTCCTGACTCCAATTCCATGAACATGTTCTTTTCTATTATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATAGTCCTGACTCCAATTCCATGAACATGTTCTTTTCTATTATGT  386

seq1  ATCACTTCTTATGAACCCAATTACCTTCTGTCCAATATCAGTATCTAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTCTTATGAACCCAATTACCTTCTGTCCAATATCAGTATCTAATC  436

seq1  TCATAATTTTAAATACACAAGGAAGACATATTCTTCCTTATTATGAAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATTTTAAATACACAAGGAAGACATATTCTTCCTTATTATGAAGAT  486

seq1  AAGTAAATTAGTATGAAGTGGTTAAAAAAGAGAAATTGGACTGAATTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATTAGTATGAAGTGGTTAAAAAAGAGAAATTGGACTGAATTCCT  536

seq1  CTTTCTTTGTTGAGTCTTTGTGTGGTTTCTGTACCAGGGTGACTATGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTGTTGAGTCTTTGTGTGGTTTCTGTACCAGGGTGACTATGAAC  586

seq1  TCATAGAATGAGTTTAGCTATGTTTCTTCTGTTTCTACTTTATGAATGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGAATGAGTTTAGCTATGTTTCTTCTGTTTCTACTTTATGAATGAT  636

seq1  TTGAGGAGTATTTCACTAACTCTTTTTTGAATATCTAGTAGAATTCTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGAGTATTTCACTAACTCTTTTTTGAATATCTAGTAGAATTCTGCA  686

seq1  CTACAACTTTCTGCCCTTGGGCTTTTTTGGAGTGGAGGACTTTTGATGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAACTTTCTGCCCTTGGGCTTTTTTGGAGTGGAGGACTTTTGATGAC  736

seq1  TGTTTCTATTTCCTTAGGGGTTATAGGCCTGTTAGTTACTTTACCAGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTATTTCCTTAGGGGTTATAGGCCTGTTAGTTACTTTACCAGATC  786

seq1  TTCATTTAACTTTGATAATTGATAGCTGTCTATAAGTCACCCATTTCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTAACTTTGATAATTGATAGCTGTCTATAAGTCACCCATTTCATT  836

seq1  TGGATTTTGCTATTTTTTGCAGTACAGGCTTCTGCAGTAAGACCTAGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTTGCTATTTTTTGCAGTACAGGCTTCTGCAGTAAGACCTAGTGA  886

seq1  TTCTTTCAATTACCTCAGTGTCCATTGTTATGTCTCCTGTTTCATTTCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCAATTACCTCAGTGTCCATTGTTATGTCTCCTGTTTCATTTCTG  936

seq1  ATTTTGCTATTCTGGGTATTGTCTCTCTACCTTTCAGTTAATTTGGCTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTATTCTGGGTATTGTCTCTCTACCTTTCAGTTAATTTGGCTAA  986

seq1  GCATAAGTCTACCTTGTTGATTGTCTC  1027
      |||||||||||||||||||||||||||
seq2  GCATAAGTCTACCTTGTTGATTGTCTC  1013


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