BAC Information

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BAC

Clone NameB6Ng01-080L15
Chromosome5 (Build37)
Map Location 72,147,295 - 72,319,002
singlet/doubletdoublet
Overlap geneGabrb1
Upstream geneGabrg1, Gabra2, LOC635092, 4930503B16Rik, Gabra4
Downstream geneLOC666545, Commd8, Atp10d, Corin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080L15.bB6Ng01-080L15.g
ACCDH895783DH895784
length4301,124
definitionDH895783|Mus musculus domesticus DNA, BAC clone: B6Ng01-080L15, 5' end.DH895784|Mus musculus domesticus DNA, BAC clone: B6Ng01-080L15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,147,295 - 72,147,730)(72,317,875 - 72,319,002)
sequence
ctaatctttgtgcgtcatagagctttgatggaacatatttgaaacctgct
atctatatacttattccctgttccattttataaacatcagtgtagtgtag
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatgtaaaaatcctatctatc
tttgcaaatacttttgaggacttaaaaattgtactaaaaggaactttatt
tgacaactgaagaataaacaaaaagtatttgatgattcaaatattatgta
cagtcaaaacctcaataaagtagatatataatcactttagtttggtagat
agaaaattgtatttatactacagttacttttgtattatttaaatattgca
agataataattaaatggaagatacagcattataaaaatgtctcttgtagt
aaagtctataaatcaattcttgtgtttttc
gaattcttgcttatttgatgatgaggagacaaaaagaaaaaattaagagt
cttgctgtatcatgaaagaaagcacaaaacagtaagatatatcaactcct
gtagcacagaacaaaggaaagcactactcattttaggaactgtgccttgg
gtactgagggatatgagtcgaaaagaaagtttgtgtgctacctgaattac
tacgcatatcagctaccaatggcccagaaaataaaccacttgtgaaagaa
cagaagatagtaatggagctaaaacaaggacatagaaaagaaaatcatag
gacatcagaagtacattcttctgatagccatgcagtctgaattagacatt
aaaaattcaggacacaaataagcaggaagcatgaacaagagcaagtaaag
aagagggttagagagagtgcaaatctgaaaatacattaaatattcatggg
tttcttgtattgaacttagaacttttcttttgtatttgaaatgtgtcaaa
ataaaaagttggtgtataaattcagaaattcaaatgtatttaattttttc
tctatatcaaatacttttctagggaatcagggaagtaaataatactgctt
tttctttttagtgcaggccaatgcattgccccaggttagacttggtccat
actctataagtaattattaaggtgttacccatcactcactttaagtgtga
catatgtctgtttctggaatatctatgagattttgctttccttcattttt
ctttttctttttgaattgggattacagttaatcgtatcccctctcccaca
cactagggcagtgagggtaggtgaataggggggagtgagtacaatttcct
taggttctaagtaatgagtctgttagtttgagatgttttccttcctctat
gttactgggctctatgcattttgtcacttggtgcaatgaatattgaatcc
aaagagaaaaaagatgtcaacggcatacatcagtatgacattcaagtcac
aagattagattatgacaatgctccttaacaaacctgaaaaggttggggat
ggaaatgatatgagaatggtcatatgcctgcctatgggtaatcgtcaggg
gctgacataccctctcatgtgcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_72147295_72147730
seq2: B6Ng01-080L15.b_47_482

seq1  GAATTCCTAATCTTTGTGCGTCATAGAGCTTTGATGGAACATATTTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAATCTTTGTGCGTCATAGAGCTTTGATGGAACATATTTGAAA  50

seq1  CCTGCTATCTATATACTTATTCCCTGTTCCATTTTATAAACATCAGTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTATCTATATACTTATTCCCTGTTCCATTTTATAAACATCAGTGTA  100

seq1  GTGTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATGTAAAAATCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATGTAAAAATCCTA  150

seq1  TCTATCTTTGCAAATACTTTTGAGGACTTAAAAATTGTACTAAAAGGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTTTGCAAATACTTTTGAGGACTTAAAAATTGTACTAAAAGGAAC  200

seq1  TTTATTTGACAACTGAAGAATAAACAAAAAGTATTTGATGATTCAAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGACAACTGAAGAATAAACAAAAAGTATTTGATGATTCAAATAT  250

seq1  TATGTACAGTCAAAACCTCAATAAAGTAGATATATAATCACTTTAGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACAGTCAAAACCTCAATAAAGTAGATATATAATCACTTTAGTTTG  300

seq1  GTAGATAGAAAATTGTATTTATACTACAGTTACTTTTGTATTATTTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATAGAAAATTGTATTTATACTACAGTTACTTTTGTATTATTTAAAT  350

seq1  ATTGCAAGATAATAATTAAATGGAAGATACAGCATTATAAAAATGTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAAGATAATAATTAAATGGAAGATACAGCATTATAAAAATGTCTCT  400

seq1  TGTAGTAAAGTCTATAAATCAATTCTTGTGTTTTTC  436
      ||||||||||||||||||||||||||||||||||||
seq2  TGTAGTAAAGTCTATAAATCAATTCTTGTGTTTTTC  436

seq1: chr5_72317875_72319002
seq2: B6Ng01-080L15.g_70_1193 (reverse)

seq1  TGGCACATGGAGAGGATTGCTCAGCCCCTGACGATTACCCATAGGCAGGC  50
      |||||||| |||||| |   ||||||||||||||||||||||||||||||
seq2  TGGCACAT-GAGAGGGTATGTCAGCCCCTGACGATTACCCATAGGCAGGC  49

seq1  ATAATGCCATCTTCATATCATTCCCATCACCAACCTTTTCAGGTCTGCTT  100
      |||   ||||  |||||||||| ||||| ||||||||||||||| || ||
seq2  ATATGACCATTCTCATATCATTTCCATCCCCAACCTTTTCAGGTTTG-TT  98

seq1  AGAGAGCATTTGTCATAATCTAATCTTGTGACTTGAATGTCATACTGATG  150
      |  ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCA-TTGTCATAATCTAATCTTGTGACTTGAATGTCATACTGATG  147

seq1  TATGCCGTTGACATCTTTTTTTCTCTTTGGATTCAATATTCATTTGCACC  200
      ||||||||||||||| |||||||||||||||||||||||||| |||||||
seq2  TATGCCGTTGACATC-TTTTTTCTCTTTGGATTCAATATTCA-TTGCACC  195

seq1  AAGTGACAAAATGCATAGAGCCCAGTAACATAGAGGAAGGAAAACATCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACAAAATGCATAGAGCCCAGTAACATAGAGGAAGGAAAACATCTC  245

seq1  -AACTAACAGACTCATTACTTTAGAACCTAAGGAAATTGTACTCACT-CC  298
       |||||||||||||||||| ||||||||||||||||||||||||||| ||
seq2  AAACTAACAGACTCATTAC-TTAGAACCTAAGGAAATTGTACTCACTCCC  294

seq1  ACCTATTCACCTACCCTCACTGCCCTAGTGTGTGGGAGAGGGGATACGAT  348
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATTCACCTACCCTCACTGCCCTAGTGTGTGGGAGAGGGGATACGAT  344

seq1  TAACTGTAATCCCAATTCAAAAAGAAAAAGAAAAATGAAGGAAAGCAAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTAATCCCAATTCAAAAAGAAAAAGAAAAATGAAGGAAAGCAAAA  394

seq1  TCTCATAGATATTCCAGAAACAGACATATGTCACACTTAAAGTGAGTGAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATAGATATTCCAGAAACAGACATATGTCACACTTAAAGTGAGTGAT  444

seq1  GGGTAACACCTTAATAATTACTTATAGAGTATGGACCAAGTCTAACCTGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAACACCTTAATAATTACTTATAGAGTATGGACCAAGTCTAACCTGG  494

seq1  GGCAATGCATTGGCCTGCACTAAAAAGAAAAAGCAGTATTATTTACTTCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATGCATTGGCCTGCACTAAAAAGAAAAAGCAGTATTATTTACTTCC  544

seq1  CTGATTCCCTAGAAAAGTATTTGATATAGAGAAAAAATTAAATACATTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCCCTAGAAAAGTATTTGATATAGAGAAAAAATTAAATACATTTG  594

seq1  AATTTCTGAATTTATACACCAACTTTTTATTTTGACACATTTCAAATACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTGAATTTATACACCAACTTTTTATTTTGACACATTTCAAATACA  644

seq1  AAAGAAAAGTTCTAAGTTCAATACAAGAAACCCATGAATATTTAATGTAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGTTCTAAGTTCAATACAAGAAACCCATGAATATTTAATGTAT  694

seq1  TTTCAGATTTGCACTCTCTCTAACCCTCTTCTTTACTTGCTCTTGTTCAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGATTTGCACTCTCTCTAACCCTCTTCTTTACTTGCTCTTGTTCAT  744

seq1  GCTTCCTGCTTATTTGTGTCCTGAATTTTTAATGTCTAATTCAGACTGCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTGCTTATTTGTGTCCTGAATTTTTAATGTCTAATTCAGACTGCA  794

seq1  TGGCTATCAGAAGAATGTACTTCTGATGTCCTATGATTTTCTTTTCTATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATCAGAAGAATGTACTTCTGATGTCCTATGATTTTCTTTTCTATG  844

seq1  TCCTTGTTTTAGCTCCATTACTATCTTCTGTTCTTTCACAAGTGGTTTAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTTTTAGCTCCATTACTATCTTCTGTTCTTTCACAAGTGGTTTAT  894

seq1  TTTCTGGGCCATTGGTAGCTGATATGCGTAGTAATTCAGGTAGCACACAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGGCCATTGGTAGCTGATATGCGTAGTAATTCAGGTAGCACACAA  944

seq1  ACTTTCTTTTCGACTCATATCCCTCAGTACCCAAGGCACAGTTCCTAAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTTTCGACTCATATCCCTCAGTACCCAAGGCACAGTTCCTAAAA  994

seq1  TGAGTAGTGCTTTCCTTTGTTCTGTGCTACAGGAGTTGATATATCTTACT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAGTGCTTTCCTTTGTTCTGTGCTACAGGAGTTGATATATCTTACT  1044

seq1  GTTTTGTGCTTTCTTTCATGATACAGCAAGACTCTTAATTTTTTCTTTTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTGCTTTCTTTCATGATACAGCAAGACTCTTAATTTTTTCTTTTT  1094

seq1  GTCTCCTCATCATCAAATAAGCAAGAATTC  1128
      ||||||||||||||||||||||||||||||
seq2  GTCTCCTCATCATCAAATAAGCAAGAATTC  1124