BAC Information

Click to search

BAC

Clone NameB6Ng01-080O03
Chromosome5 (Build37)
Map Location 16,072,653 - 16,088,407
singlet/doubletdoublet
Overlap geneHgf
Upstream geneSpeer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121
Downstream geneEG668131, LOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080O03.bB6Ng01-080O03.g
ACCDH895896DH895897
length1,2461,120
definitionDH895896|Mus musculus domesticus DNA, BAC clone: B6Ng01-080O03, 5' end.DH895897|Mus musculus domesticus DNA, BAC clone: B6Ng01-080O03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,072,653 - 16,073,911)(16,087,276 - 16,088,407)
sequence
gaattccatgatcccccatgaacacaggtaagaacagcatgaagaaaaga
gggtcagtcaaccttacctgtctgcatatgaacaggcacgcacttgttct
ctagaatagcacttagccatcaccacttagtcaataatgttgaattacac
gaggcccaaacttgcatgaatgcaggattgattggtataagcagatttta
acaaatattatttatatctggtctaacatttttaacctcaatgtctcaac
ttgtaaatgttattggaaatgaatcttttgcctttgagagggtactatga
cttcatagggaagtgatagacctgtgatctcacaaagggtgtttttaaac
cttggtagatctcagctttggctgcttgttaaaatggcccaatgcaaatc
ttggaaagtcctactacccaagatacaaacagaccaatgaaatgagaacc
tcccgagtaggggttggaataagtctccaggatatctagggctccttgat
tccttctaaagtgccagtaaagctgagacccactagtccagactctttta
acacaggttgaccagtggtctcatttttattctaacctgttgcctaaagt
tttgagaaatacttttttcttggacactagaaaaacagaatacttgaaga
tcgaaaaagacaatatccataggcttatgatattttaaacatcatggaga
aaatcataaacattttataagcattagcgaactcaatgtgtccatggtct
ccagatctactttcctaatcattttagtaagaactcaaatactttaaaac
aactttacctggttagaagcttgattagaaggtttagtttaccatgttca
aggacggagtagacagttaaatggactagttcctgcattccttaaagaaa
tagcacagtggatagttttatgttcttagttctgggtcatacagtggtgg
taaggggcattaacttagtacaagtctggtgagtttcatacatccagtgt
gtgtagcaacctttcttcacgagattgtgcttctattcataatatacacg
ctgtgatattgtctgtaatagaaaaaaatcatattcattcctttctactt
tttcaagcattatttgcaaatgattgattttgttttagcaagcagaaata
attaccattgacctcgtggtataaaataaaagtagttcttcatgctgaat
gaactttggcttacttaccgaacctagccggtactatccaggttgg
gaattctcaccaacatgtgctattactagagtttttcatcttagtcattt
tgattggtataaggtacaaaaggggttgtttgtatttgcattttctagat
aaggatgttgttgaacatttctttaagtacttctctaccatttctctgtt
gagaattctctgttttgctctgtatctctctctctcctatcctccctcct
tctctccttcttccccacctcctcacccacctctgtgtgtatattacagc
tcagcttaatgatcagaaataatgtcaccagaattttgaaagcatcactg
gctttgtagtgggaagaagaaaattggagaggacagcagtgaacagagtg
ataactccactcagaaaaccatttgtctaaaaacagatgatgaacaacag
tactttatggcttaaagaggagagtgatgtatcaaaaccgccaatggaga
aattcacagacaaataggcagacacccctaggtgaggcatcaaacagaaa
atgtggagaattctagggctaggattattctaggattttagattatgaac
tagataaatgattgtagcaagcgaacaaataagtatttaaatcacagtat
agggcctactgcaagagtaatgaagaaactcagagtaacatcttaagagt
agaagtcaccacataggtaagttacctgcagtgacagattgagatcaatg
gtgacaggtgatagatatatttctaatccatgcactctaaggaaacaagt
caacatcccatgatctaacacaagaaaaaagtgctttcagctatacctga
caatcctcaggtgcctacagaaccaaaacaatcttcccaattgtacccct
aagatcatttgtgcccaaaagattgaaggtacagcaaacatgcacagctg
cctctttttagatgacactaaggatttgataaaaaaaagaattttaattt
acaaggacataccacaggatttctctatttctgaatttacaaatttttct
tattaaattaggccgtattgcttatctgtgttttaccatttctataattc
acatgcctgatttctaaatagaaagcatggcttacttatccctagaatta
tggaaaacccaatggcgagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_16072653_16073911
seq2: B6Ng01-080O03.b_47_1292

seq1  GAATTCCATGATCCCCCATGAACACAGGTAAGAACAGCATGAAGAAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGATCCCCCATGAACACAGGTAAGAACAGCATGAAGAAAAGA  50

seq1  GGGTCAGTCAACCTTACCTGTCTGCATATGAACAGGCACGCACTTGTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGTCAACCTTACCTGTCTGCATATGAACAGGCACGCACTTGTTCT  100

seq1  CTAGAATAGCACTTAGCCATCACCACTTAGTCAATAATGTTGAATTACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATAGCACTTAGCCATCACCACTTAGTCAATAATGTTGAATTACAC  150

seq1  GAGGCCCAAACTTGCATGAATGCAGGATTGATTGGTATAAGCAGATTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCAAACTTGCATGAATGCAGGATTGATTGGTATAAGCAGATTTTA  200

seq1  ACAAATATTATTTATATCTGGTCTAACATTTTTAACCTCAATGTCTCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATTATTTATATCTGGTCTAACATTTTTAACCTCAATGTCTCAAC  250

seq1  TTGTAAATGTTATTGGAAATGAATCTTTTGCCTTTGAGAGGGTACTATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAATGTTATTGGAAATGAATCTTTTGCCTTTGAGAGGGTACTATGA  300

seq1  CTTCATAGGGAAGTGATAGACCTGTGATCTCACAAAGGGTGTTTTTAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATAGGGAAGTGATAGACCTGTGATCTCACAAAGGGTGTTTTTAAAC  350

seq1  CTTGGTAGATCTCAGCTTTGGCTGCTTGTTAAAATGGCCCAATGCAAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTAGATCTCAGCTTTGGCTGCTTGTTAAAATGGCCCAATGCAAATC  400

seq1  TTGGAAAGTCCTACTACCCAAGATACAAACAGACCAATGAAATGAGAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAGTCCTACTACCCAAGATACAAACAGACCAATGAAATGAGAACC  450

seq1  TCCCGAGTAGGGGTTGGAATAAGTCTCCAGGATATCTAGGGCTCCTTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAGTAGGGGTTGGAATAAGTCTCCAGGATATCTAGGGCTCCTTGAT  500

seq1  TCCTTCTAAAGTGCCAGTAAAGCTGAGACCCACTAGTCCAGACTCTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTAAAGTGCCAGTAAAGCTGAGACCCACTAGTCCAGACTCTTTTA  550

seq1  ACACAGGTTGACCAGTGGTCTCATTTTTATTCTAACCTGTTGCCTAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGTTGACCAGTGGTCTCATTTTTATTCTAACCTGTTGCCTAAAGT  600

seq1  TTTGAGAAATACTTTTTTCTTGGACACTAGAAAAACAGAATACTTGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAAATACTTTTTTCTTGGACACTAGAAAAACAGAATACTTGAAGA  650

seq1  TCGAAAAAGACAATATCCATAGGCTTATGATATTTTAAACATCATGGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAAAAGACAATATCCATAGGCTTATGATATTTTAAACATCATGGAGA  700

seq1  AAATCATAAACATTTTATAAGCATTAGCGAACTCAATGTGTCCATGGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATAAACATTTTATAAGCATTAGCGAACTCAATGTGTCCATGGTCT  750

seq1  CCAGATCTACTTTCCTAATCATTTTAGTAAGAACTCAAATACTTTAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCTACTTTCCTAATCATTTTAGTAAGAACTCAAATACTTTAAAAC  800

seq1  AACTTTACCTGGTTAGAAGCTTGATTAGAAGGTTTAGTTTACCATGTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTACCTGGTTAGAAGCTTGATTAGAAGGTTTAGTTTACCATGTTCA  850

seq1  AGGACGGAGTAGACAGTTAAATGGACTAGTTCCTGCATTCCTTAAAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACGGAGTAGACAGTTAAATGGACTAGTTCCTGCATTCCTTAAAGAAA  900

seq1  TAGCACAGTGGATAGTTTTATGTTCTTAGTTCTGGGTCATACAGTGGTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACAGTGGATAGTTTTATGTTCTTAGTTCTGGGTCATACAGTGGTGG  950

seq1  TAAGGGGCATTAACTTAGTACAAGTCTGGTGAGTTTCATACATCCAGTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGGCATTAACTTAGTACAAGTCTGGTGAGTTTCATACATCCAGTGT  1000

seq1  GTGTAGCAACCTTTCTTCACGAGATTGTGCTTCTATTCATAATATACACG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCAACCTTTCTTCACGAGATTGTGCTTCTATTCATAATATACACG  1050

seq1  CTGTGATATTGTCTGTAATAGAAAAAGATCATATTCATTCCTTTCTACTT  1100
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTGTGATATTGTCTGTAATAGAAAAAAATCATATTCATTCCTTTCTACTT  1100

seq1  TTTCAAAGCATATATTTGCAAAATGATTGATTTTGTTTTAGCAAGCAGAT  1150
      |||| |||||| ||||||| ||||||||||||||||||||||||||||| 
seq2  TTTC-AAGCAT-TATTTGC-AAATGATTGATTTTGTTTTAGCAAGCAGA-  1146

seq1  ATTAATTAACCAATTGA-CTCGT-GTAT-AAATAAAAGTTAAGTTCTTCC  1197
      | ||||||  | ||||| ||||| |||| ||||||||||  ||||||| |
seq2  AATAATTA--CCATTGACCTCGTGGTATAAAATAAAAGT--AGTTCTT-C  1191

seq1  ATGCTGTAATGAAACCTTTGGCCTTTACCTTACGGAACCTAGCCAGTGAC  1247
      |||||| ||||||  |||||||  ||| ||||| |||||||||| || ||
seq2  ATGCTG-AATGAA--CTTTGGC--TTA-CTTACCGAACCTAGCCGGT-AC  1234

seq1  TATCCAAGTTGG  1259
      |||||| |||||
seq2  TATCCAGGTTGG  1246

seq1: chr5_16087276_16088407
seq2: B6Ng01-080O03.g_69_1188 (reverse)

seq1  ACTCTGCCATTGGGTTTCTCAATGTATCTCTGTGGATTATGTAAGCCAAT  50
      |||| ||||||||||||  ||   ||  |||  ||| || ||||||| ||
seq2  ACTC-GCCATTGGGTTTTCCA---TAATTCTAGGGA-TAAGTAAGCC-AT  44

seq1  GCTTTCTATATTAGAAATTAAAAGCATGTGAATTAATTAGAAATGGTGAA  100
      ||||||||| ||||||||   | ||||||||||||  |||||||||| ||
seq2  GCTTTCTAT-TTAGAAAT--CAGGCATGTGAATTA--TAGAAATGGT-AA  88

seq1  AACACTAGAT-AGCAATACGGCTAATTTTAATAAG-AAAATTTGTAATTT  148
      ||||| |||| |||||||||||  | ||||||||| |||||||||||  |
seq2  AACAC-AGATAAGCAATACGGCCTAATTTAATAAGAAAAATTTGTAA-AT  136

seq1  TCAGAAATAGAGAAAT-CTGTGGTATGTCTTTGTAAATTAAAAATTCTTT  197
      |||||||||||||||| |||||||||||| ||||||||| ||||||||||
seq2  TCAGAAATAGAGAAATCCTGTGGTATGTCCTTGTAAATT-AAAATTCTTT  185

seq1  TTTTTATCAAATTCCTTAGTGTCATCTTAAAAAGAGGCAGCTGTGCATGT  247
      ||||||||||| |||||||||||||| |||||||||||||||||||||||
seq2  TTTTTATCAAA-TCCTTAGTGTCATC-TAAAAAGAGGCAGCTGTGCATGT  233

seq1  TTGCTGTACCTTCAATCTTTTGGGCACAAATGATCTTA-GGGTACAATTG  296
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTGCTGTACCTTCAATCTTTTGGGCACAAATGATCTTAGGGGTACAATTG  283

seq1  GGAAGATTGTTTTGGTTCTGTAGGCACCTGAGGATTGTCAGGTATAGCTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATTGTTTTGGTTCTGTAGGCACCTGAGGATTGTCAGGTATAGCTG  333

seq1  AAAGCACTTTTTTCTTGTGTTAGATCATGGGATGTTGACTTGTTTCCTTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACTTTTTTCTTGTGTTAGATCATGGGATGTTGACTTGTTTCCTTA  383

seq1  GAGTGCATGGATTAG-AATATATCTATCACCTGTCACCATTGATCTCAAT  445
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAGTGCATGGATTAGAAATATATCTATCACCTGTCACCATTGATCTCAAT  433

seq1  CTGTCACTGCAGGTAACTTACCTATGTGGTGACTTCTACTCTTAAGATGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACTGCAGGTAACTTACCTATGTGGTGACTTCTACTCTTAAGATGT  483

seq1  TACTCTGAGTTTCTTCATTACTCTTGCAGTAGGCCCTATACTGTGATTTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGAGTTTCTTCATTACTCTTGCAGTAGGCCCTATACTGTGATTTA  533

seq1  AATACTTATTTGTTCGCTTGCTACAATCATTTATCTAGTTCATAATCTAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTATTTGTTCGCTTGCTACAATCATTTATCTAGTTCATAATCTAA  583

seq1  AATCCTAGAATAATCCTAGCCCTAGAATTCTCCACATTTTCTGTTTGATG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTAGAATAATCCTAGCCCTAGAATTCTCCACATTTTCTGTTTGATG  633

seq1  CCTCACCTAGGGGTGTCTGCCTATTTGTCTGTGAATTTCTCCATTGGCGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCTAGGGGTGTCTGCCTATTTGTCTGTGAATTTCTCCATTGGCGG  683

seq1  TTTTGATACATCACTCTCCTCTTTAAGCCATAAAGTACTGTTGTTCATCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATACATCACTCTCCTCTTTAAGCCATAAAGTACTGTTGTTCATCA  733

seq1  TCTGTTTTTAGACAAATGGTTTTCTGAGTGGAGTTATCACTCTGTTCACT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTTAGACAAATGGTTTTCTGAGTGGAGTTATCACTCTGTTCACT  783

seq1  GCTGTCCTCTCCAATTTTCTTCTTCCCACTACAAAGCCAGTGATGCTTTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTCTCCAATTTTCTTCTTCCCACTACAAAGCCAGTGATGCTTTC  833

seq1  AAAATTCTGGTGACATTATTTCTGATCATTAAGCTGAGCTGTAATATACA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTGGTGACATTATTTCTGATCATTAAGCTGAGCTGTAATATACA  883

seq1  CACAGAGGTGGGTGAGGAGGTGGGGAAGAAGGAGAGAAGGAGGGAGGATA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGGTGGGTGAGGAGGTGGGGAAGAAGGAGAGAAGGAGGGAGGATA  933

seq1  GGAGAGAGAGAGATACAGAGCAAAACAGAGAATTCTCAACAGAGAAATGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGAGAGATACAGAGCAAAACAGAGAATTCTCAACAGAGAAATGG  983

seq1  TAGAGAAGTACTTAAAGAAATGTTCAACAACATCCTTATCTAGAAAATGC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAGTACTTAAAGAAATGTTCAACAACATCCTTATCTAGAAAATGC  1033

seq1  AAATACAAACAACCCCTTTTGTACCTTATACCAATCAAAATGACTAAGAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAAACAACCCCTTTTGTACCTTATACCAATCAAAATGACTAAGAT  1083

seq1  GAAAAACTCTAGTAATAGCACATGTTGGTGAGAATTC  1132
      |||||||||||||||||||||||||||||||||||||
seq2  GAAAAACTCTAGTAATAGCACATGTTGGTGAGAATTC  1120