BAC Information

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BAC

Clone NameB6Ng01-080P20
Chromosome5 (Build37)
Map Location 49,134,231 - 49,135,195
singlet/doubletsinglet
Overlap geneKcnip4
Upstream geneLOC100040876, Slit2, 4933428G09Rik
Downstream geneLOC100041668, LOC100041659, EG433885
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080P20.g
ACCDH895970
length1,123
definitionDH895970|Mus musculus domesticus DNA, BAC clone: B6Ng01-080P20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccgatctcggttccttttccctgacctgcatttgctcgtgctgg
cagctttgagctacgtttctcctcctctacgtcttgtgcgattgatttcc
cagctgtcctgattaaacctattggttcgcgcctgatctgcctgacctga
tctcttccacctttggcttcttctttgtcttaataacatcctgctgttat
tccagtttttggtccgtggtggcttgcacatgtccctggactggcctgaa
aattatgttgtattcttgaaaaggatacttctggttctttcttgagatgg
tgaacaatgtctttaaataaaaaggagtgattgtattgttaatcgggtaa
gattaaattctaactgttttatttgaatagtgtcatttacataaaaatta
tttcctggtgttgcttgagctaataaagaacaactgtcagttataaataa
aggaaattgtggaaagggggcatcttgcctcttaaatgtagaaaattata
atcttactctaattaaaatgaaatcagattgattaaattaatatgaaaat
taaaatcttaaactgattttgggactgggttattcgactgttttggcaga
atggttcaataactaagtcaatttcaatgatccagatcataaaaatttag
gagaagtaacacctatcttttactgaactgcacactttaattctctgaaa
tgatttcagttggtaataaatgacttgtgaggactgacattggtttaaca
acaaaaaaaaatcttgggttagatcctatagacaagggaaaatgtgtgtt
agagcaatagacaagggaaagaatatgaccatggctctgaatctcctctg
atccgggtattccaagcaggaaacaaaacagactgggatttatagtaacc
ttgagaccagcctgggttactggagatcctgtctcaaaagggatcagaca
aagcatctacaaacaaagtggcatgcaggtttgtaccggtggatttcaga
ataggaaagccgttccaaaaaaaaaaaatataaggcaaacatgaaatcca
aacttagactaaattatgatctgttcttagcctaaagatgaaagtcattt
ttccgaggagcaagaaaaagctt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_49134231_49135195
seq2: B6Ng01-080P20.g_218_1191

seq1  ATCTCTTCCCCAGTTGGCTTCTTCTTTGTCTTAATAACCTCCTGCTGTTA  50
      ||||||||| |  ||||||||||||||||||||||||| |||||||||||
seq2  ATCTCTTCCACCTTTGGCTTCTTCTTTGTCTTAATAACATCCTGCTGTTA  50

seq1  TTAAAGTTTTTGGTCCAGGGTGGCTTGCACATGTAAATGGACTGGCACAA  100
      ||  ||||||||||||  ||||||||||||||||   |||||||||   |
seq2  TTCCAGTTTTTGGTCCGTGGTGGCTTGCACATGTCCCTGGACTGGCCTGA  100

seq1  AGAGGATGTTGGATACATGGGAAGTCTGCCACAGCTAATTTGGTAGGATG  150
      | |  |||||| || | ||  |||  | |  | | |  |||  |  ||||
seq2  AAATTATGTTGTATTCTTGAAAAGGATACTTCTGGTTCTTTCTTGAGATG  150

seq1  GTGAACTTGTTCTTTAAATAGAAAGGAGT-ATAGATATTTTTTATGGTAT  199
      ||||||    |||||||||| |||||||| || | |||| || || |  |
seq2  GTGAACAATGTCTTTAAATAAAAAGGAGTGATTG-TATTGTTAATCGGGT  199

seq1  GTGTTTAAATACTAACTGTTTTATTTGAATAGTGTCATTTACATAAAAAT  249
        | |||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAGATTAAATTCTAACTGTTTTATTTGAATAGTGTCATTTACATAAAAAT  249

seq1  TATTTCCTGGTGTTGCTTGAGCTAATAAAGAACAACTGTCAGTTATAAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCTGGTGTTGCTTGAGCTAATAAAGAACAACTGTCAGTTATAAAT  299

seq1  AAAGGAAATTGTGGAAAGGGGGCATCTTGCCTCTTAAATGTAGAAAATTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAATTGTGGAAAGGGGGCATCTTGCCTCTTAAATGTAGAAAATTA  349

seq1  TAATCTTACTCTAATTAAAATGAAATCAGATTGATTAAATTAATATGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTACTCTAATTAAAATGAAATCAGATTGATTAAATTAATATGAAA  399

seq1  ATTAAAATCTTAAACTGATTTTGGGACTGGGTTATTCGACTGTTTTGGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATCTTAAACTGATTTTGGGACTGGGTTATTCGACTGTTTTGGCA  449

seq1  GAATGGTTCAATAACTAAGTCAATTTCAATGATCCAGATCATAAAAATTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGTTCAATAACTAAGTCAATTTCAATGATCCAGATCATAAAAATTT  499

seq1  AGGAGAAGTAACACCTATCTTTTACTGAACTGCACACTTTAATTCTCTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAGTAACACCTATCTTTTACTGAACTGCACACTTTAATTCTCTGA  549

seq1  AATGATTTCAGTTGGTAATAAATGACTTGTGAGGACTGACATTGGTTTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTTCAGTTGGTAATAAATGACTTGTGAGGACTGACATTGGTTTAA  599

seq1  CAACAAAAAAAAATCTTGGGTTAGATCCTATAGACAAGGG-AAATGTGTG  648
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAACAAAAAAAAATCTTGGGTTAGATCCTATAGACAAGGGAAAATGTGTG  649

seq1  TTAGAGCAAATAGACAAGGGAAAGAATATGACCATGGCTCTGAATCT-CT  697
      ||||||| ||||||||||||||||||||||||||||||||||||||| ||
seq2  TTAGAGC-AATAGACAAGGGAAAGAATATGACCATGGCTCTGAATCTCCT  698

seq1  CTGATCCGTGTATTCCAAAGCAGGAAACAAAACCAGACTTGGATTTATAG  747
      |||||||| ||||||| ||||||||||||||| |||||| ||||||||||
seq2  CTGATCCGGGTATTCC-AAGCAGGAAACAAAA-CAGACTGGGATTTATAG  746

seq1  TAAACTTGAGACCAGCCTGGGTTACTGGAGATCCTGTCTCAAAA-GGATC  796
      ||| |||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAACCTTGAGACCAGCCTGGGTTACTGGAGATCCTGTCTCAAAAGGGATC  796

seq1  AGACAAAGCAACTACAAACAAAGTGGCATGCAGGTTTGTA-CAGTGTATT  845
      |||||||||| ||||||||||||||||||||||||||||| | ||| |||
seq2  AGACAAAGCATCTACAAACAAAGTGGCATGCAGGTTTGTACCGGTGGATT  846

seq1  TCAGAATAAGAAAGCC-ATCCAAAAAAAAAAA--ATAAAGCAAACA--AA  890
      |||||||| |||||||  ||||||||||||||  |||| |||||||  ||
seq2  TCAGAATAGGAAAGCCGTTCCAAAAAAAAAAAATATAAGGCAAACATGAA  896

seq1  AACAAAAC-TAGACTAAA-TATAGACTG-TCCTAGGCCAAAGATAGAAAG  937
      | | |||| ||||||||| |||   ||| || ||| | |||||| |||||
seq2  ATCCAAACTTAGACTAAATTATGATCTGTTCTTAGCCTAAAGAT-GAAAG  945

seq1  TCATTTTTCCTAGGACCAAG-AAGAGCTT  965
      |||||||||| |||| |||| || |||||
seq2  TCATTTTTCCGAGGAGCAAGAAAAAGCTT  974