BAC Information

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BAC

Clone NameB6Ng01-081K02
Chromosome5 (Build37)
Map Location 144,897,549 - 145,032,539
singlet/doubletdoublet
Overlap geneLmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1
Upstream geneOlfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm
Downstream gene4930568B11Rik, Nptx2, EG621967, Tmem130, LOC100039427, Trrap, Smurf1, AW146299, EG231885, EG666992, 1700018F24Rik, Arpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116, Zfp655, LOC677270
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081K02.bB6Ng01-081K02.g
ACCDH896426DH896427
length789735
definitionDH896426|Mus musculus domesticus DNA, BAC clone: B6Ng01-081K02, 5' end.DH896427|Mus musculus domesticus DNA, BAC clone: B6Ng01-081K02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,031,755 - 145,032,539)(144,897,549 - 144,898,280)
sequence
gaattcaagatcatggctagccttggctacatgagacccaatctcaaaca
aacaagcaaaacagcaattggctttcaaaatccaaaggcagaaatatttg
agagtccttacccaagcttgcgcccagtcccactaaggatgcttactttg
tctttgtactcggaggagaaatgcacagtggccctacacaaatgcagggg
gcttcccgttagaggatgggggtacatgcagacttgtacaccattgttac
cagctacagaaaggacagacacctcttggatatttcaggatcctaggcag
actacagagagaagggccaccctccccttggcactgctccctcatcagac
tccagctcaaatcagggctcccaggagcaaagacaggaagccacagaatt
agcgttgcttccaaaagcaagcatgatggcaggttttggtctgggactct
ctggggatttgtagttgatttaaatattttttataatctctttcatgtct
ttttttttattttactttttcctttctttctttctttctctttttctttt
ttttctttctttctttctttcttttttttttctttttggttttttgagac
agggtttctctgtgtagccctggctatcctagaactcactctgtagacca
ggctagcctcaaactcagaaatccacctgcctctgcctcccgagtgctgg
ggattaaagggtgtgtgccaccacgcccggctttattttacattttttaa
caagtgttttgtctctgtgtgtgtgtgtgtgtgtgtgtg
gaattccagaccctggtctttgtagcttcacccttctgggaccaggaaac
atgcagaagcgtcgctcaggaaggtggggcagataagagacctgcagctt
ccctctgggtctcttgggatggtgaggagcacaaacagaggtgggcatga
aagcagctacagggagccaggcagctatcctttttctgtcttgaagcctc
cttgaggtcactcttggagctggggagctggcccagtaggaagatggctc
actgctgcacaagcctgaggacctgaggttgcacttcccactcacatgta
agaggaggccaggccaggtgacaaaactgatagtccggagtcagggaggt
tttctgtttcaaaaactgaggcggagaccaacagaggaaggctcctgcca
ttgcttggcttctgggacacacaggtacagacacacagtgcatacagtcc
ctatcacatgtgtcaggaaataggaaggaaatttttagcttctctactta
gaatattcaactatttttatcatcctgggatataaaagaacttgccatcc
ttggcactaaatctagacaacatgaaaaaaaattgccaaatctggttcat
aaaataaaatactctgtaataaaacatatactatataccagctagacatg
gtagcaaaaatatttgtaaagtaattaaacagtttcacacaaatatttta
agaaattgaagagtagccatgtgggtggtggcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_145031755_145032539
seq2: B6Ng01-081K02.b_45_833 (reverse)

seq1  CACACACACACACACACACACACAGAGAC-AAACACTTGTT-AAAAATGT  48
      ||||||||||||||||||||||||||||| ||||||||||| ||||||||
seq2  CACACACACACACACACACACACAGAGACAAAACACTTGTTAAAAAATGT  50

seq1  AAAATAAAGCCGGGCGTGGTGGCACACA-CCTTTAAT-CCCAGCACTCGG  96
      |||||||||||||||||||||||||||| |||||||| ||||||||||||
seq2  AAAATAAAGCCGGGCGTGGTGGCACACACCCTTTAATCCCCAGCACTCGG  100

seq1  GAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCTAGCCTGGTCTACAGA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCTAGCCTGGTCTACAGA  150

seq1  GTGAGTTCTAGGATAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCTAGGATAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAA  200

seq1  CCAAAAAGAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAAAAAAGAAAAAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAGAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAAAAAAGAAAAAG  250

seq1  AGAAAGAAAGAAAGAAAGGAAAAAGTAAAATAAAAAAAAAGACATGAAAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGGAAAAAGTAAAATAAAAAAAAAGACATGAAAG  300

seq1  AGATTATAAAAAATATTTAAATCAACTACAAATCCCCAGAGAGTCCCAGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATAAAAAATATTTAAATCAACTACAAATCCCCAGAGAGTCCCAGA  350

seq1  CCAAAACCTGCCATCATGCTTGCTTTTGGAAGCAACGCTAATTCTGTGGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACCTGCCATCATGCTTGCTTTTGGAAGCAACGCTAATTCTGTGGC  400

seq1  TTCCTGTCTTTGCTCCTGGGAGCCCTGATTTGAGCTGGAGTCTGATGAGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTCTTTGCTCCTGGGAGCCCTGATTTGAGCTGGAGTCTGATGAGG  450

seq1  GAGCAGTGCCAAGGGGAGGGTGGCCCTTCTCTCTGTAGTCTGCCTAGGAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTGCCAAGGGGAGGGTGGCCCTTCTCTCTGTAGTCTGCCTAGGAT  500

seq1  CCTGAAATATCCAAGAGGTGTCTGTCCTTTCTGTAGCTGGTAACAATGGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAATATCCAAGAGGTGTCTGTCCTTTCTGTAGCTGGTAACAATGGT  550

seq1  GTACAAGTCTGCATGTACCCCCATCCTCTAACGGGAAGCCCCCTGCATTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGTCTGCATGTACCCCCATCCTCTAACGGGAAGCCCCCTGCATTT  600

seq1  GTGTAGGGCCACTGTGCATTTCTCCTCCGAGTACAAAGACAAAGTAAGCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGGGCCACTGTGCATTTCTCCTCCGAGTACAAAGACAAAGTAAGCA  650

seq1  TCCTTAGTGGGACTGGGCGCAAGCTTGGGTAAGGACTCTCAAATATTTCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAGTGGGACTGGGCGCAAGCTTGGGTAAGGACTCTCAAATATTTCT  700

seq1  GCCTTTGGATTTTGAAAGCCAATTGCTGTTTTGCTTGTTTGTTTGAGATT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGGATTTTGAAAGCCAATTGCTGTTTTGCTTGTTTGTTTGAGATT  750

seq1  GGGTCTCATGTAGCCAAGGCTAGCCATGATCTTGAATTC  785
      |||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCATGTAGCCAAGGCTAGCCATGATCTTGAATTC  789

seq1: chr5_144897549_144898280
seq2: B6Ng01-081K02.g_70_804

seq1  GAATTCCAGACCCTGGTCTTTGTAGCTTCACCCTTCTGGGACCAGGAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACCCTGGTCTTTGTAGCTTCACCCTTCTGGGACCAGGAAAC  50

seq1  ATGCAGAAGCGTCGCTCAGGAAGGTGGGGCAGATAAGAGACCTGCAGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAAGCGTCGCTCAGGAAGGTGGGGCAGATAAGAGACCTGCAGCTT  100

seq1  CCCTCTGGGTCTCTTGGGATGGTGAGGAGCACAAACAGAGGTGGGCATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGGGTCTCTTGGGATGGTGAGGAGCACAAACAGAGGTGGGCATGA  150

seq1  AAGCAGCTACAGGGAGCCAGGCAGCTATCCTTTTTCTGTCTTGAAGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCTACAGGGAGCCAGGCAGCTATCCTTTTTCTGTCTTGAAGCCTC  200

seq1  CTTGAGGTCACTCTTGGAGCTGGGGAGCTGGCCCAGTAGGAAGATGGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGTCACTCTTGGAGCTGGGGAGCTGGCCCAGTAGGAAGATGGCTC  250

seq1  ACTGCTGCACAAGCCTGAGGACCTGAGGTTGCACTTCCCACTCACATGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGCACAAGCCTGAGGACCTGAGGTTGCACTTCCCACTCACATGTA  300

seq1  AGAGGAGGCCAGGCCAGGTGACAAAACTGATAGTCCGGAGTCAGGGAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGGCCAGGCCAGGTGACAAAACTGATAGTCCGGAGTCAGGGAGGT  350

seq1  TTTCTGTTTCAAAAACTGAGGCGGAGACCAACAGAGGAAGGCTCCTGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTTCAAAAACTGAGGCGGAGACCAACAGAGGAAGGCTCCTGCCA  400

seq1  TTGCTTGGCTTCTGGGACACACAGGTACAGACACACAGTGCATACAGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGGCTTCTGGGACACACAGGTACAGACACACAGTGCATACAGTCC  450

seq1  CTATCACATGTGTCAGGAAATAGGAAGGAAATTTTTAGCTTCTCTACTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCACATGTGTCAGGAAATAGGAAGGAAATTTTTAGCTTCTCTACTTA  500

seq1  GAATATTCAACTATTTTTATCATCCTGGGATATAAAAGAACTTGCCATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTCAACTATTTTTATCATCCTGGGATATAAAAGAACTTGCCATCC  550

seq1  TTGGCACTAAATCTAGACAACATGAAAAAAAATTGCCAAATCTGGTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCACTAAATCTAGACAACATGAAAAAAAATTGCCAAATCTGGTTCAT  600

seq1  AAAATAAAATACTCTGTAATAAAACATATACTATATACCAGCTAGACATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAATACTCTGTAATAAAACATATACTATATACCAGCTAGACATG  650

seq1  GTAGCAAAAATATTTGTAAAGTAATTAAACAG-TTCACACAAATA-TTTA  698
      |||||||||||||||||||||||||||||||| |||||||||||| ||||
seq2  GTAGCAAAAATATTTGTAAAGTAATTAAACAGTTTCACACAAATATTTTA  700

seq1  AGAAATTGAAGAGTAGCCATGT-GGTGGTGGCACA  732
      |||||||||||||||||||||| ||||||||||||
seq2  AGAAATTGAAGAGTAGCCATGTGGGTGGTGGCACA  735