BAC Information

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BAC

Clone NameB6Ng01-081K08
Chromosome5 (Build37)5 (Build37)
Map Location 14,996,189 - 14,997,07015,112,770 - 15,113,183
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1
Downstream geneSpeer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081K08.bB6Ng01-081K08.g
ACCDH896436DH896437
length879432
definitionDH896436|Mus musculus domesticus DNA, BAC clone: B6Ng01-081K08, 5' end.DH896437|Mus musculus domesticus DNA, BAC clone: B6Ng01-081K08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(14,996,189 - 14,997,070)(15,112,770 - 15,113,183)
sequence
gaattcacatcttatttccataaaacatatatgctgtagcatacatacat
acatacatacatacacacatacacacatacacacatacacacatacacac
atacacacatacacacatacacacatacacacatacacacatacacacat
acacacatacacacatactcacatacaattggtttgtttagttttggatg
ggtttgaggtgtggttgttgttggtttgtttttgaaacagagtctgtcta
tgtagccctggctgtcatggaatttgctttgtagatcaggctggcctcaa
attcagagattcaccttcttctgtcttctgagaactagtagtcaagtctc
cacgcccagcagtttgaattgttggattaaagattttggacatttgtcta
ctttatcttttctattaagatagaaagaagatagcctattattcaaattt
actcagaaaattattttatagtcagtcatggctggaatgcagatataaaa
aaattcaaattgtttgaaactgaaaattaaaagattaaaaagtttaagaa
actctttaaaaatttcccttttcaaaactggctggccattcatatagctc
atgaatcttaaggttttaacagtataaatgaatagcctcagcttatttca
gtttgtctttaatttaatttaggtttaatcatgtgtctatagacctgtac
ttttatcatcgtgttatttttccttatagcttaactgttaacattaatag
acctcaaaaaaataaatacatttaaatccgatgagcacagatgctcagaa
ttgttagcaacgtcttgctttgtcactgtagcttctagccccaagtacag
ccattctgagatttctgttagcgccgaag
agtttctttgatttatgcctggtgggcatccctgcacatgtgcctgtggt
atctgacagatcagctggtttaaaagcaaggctggtggtctagtcaatca
tggtcgctgttctggtgcttaaccagattctggagaaagctctattgttg
ttaagacttgagaggagcttggtggctgattatgggatggatccccgggt
ggggtagtctctggatggtccatcctttcgtcttagctttgtctccgtaa
ctccttccatgggtattttgttccctattctgacactactgcatatgcca
gttagatttagctgaaaggaccttgatatagctgtcttgtgaggctaagc
cagtacctggcaaacataagtggatgctcacagtcatttataggatggag
cacagggcctccaatggagaagctagagaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14996189_14997070
seq2: B6Ng01-081K08.b_48_926

seq1  GAATTTACATCTTATTTCCATAAAACATATATGCTGTAG----CATACAT  46
      ||||| |||||||||||||||||||||||||||||||||    |||||||
seq2  GAATTCACATCTTATTTCCATAAAACATATATGCTGTAGCATACATACAT  50

seq1  ACATACACACATACACACATACACACATACACACATACACACATACACAC  96
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATACATACACACATACACACATACACACATACACACATACACAC  100

seq1  ATACACACATACACACATACACACACACACACACACACACACATACACAC  146
      ||||||||||||||||||||||||| ||||||| ||||||    | ||||
seq2  ATACACACATACACACATACACACATACACACATACACAC----ATACAC  146

seq1  ACATACACACATACACACATACACACAAACAATTGGTTTGTCTGTTTAGT  196
      |||||||||||||||||||||| |||| ||||||||||    ||||||||
seq2  ACATACACACATACACACATACTCACATACAATTGGTT----TGTTTAGT  192

seq1  TTTGGATGGGTTTGAGGTATGGTTGTTGTTGGTTTGTTTTTGAAAC--AG  244
      |||||||||||||||||| |||||||||||||||||||||||||||  ||
seq2  TTTGGATGGGTTTGAGGTGTGGTTGTTGTTGGTTTGTTTTTGAAACAGAG  242

seq1  TCTGTCTATGTAGCCTTGGCTGTCATGGAATTTGCTTTGTAAACCAGGCT  294
      ||||||||||||||| ||||||||||||||||||||||||| | ||||||
seq2  TCTGTCTATGTAGCCCTGGCTGTCATGGAATTTGCTTTGTAGATCAGGCT  292

seq1  GGCCTCAAATTCAGAGATTCACTTTCTTCTGTCTTCTGAGACCTAGTAGT  344
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  GGCCTCAAATTCAGAGATTCACCTTCTTCTGTCTTCTGAGAACTAGTAGT  342

seq1  CAAGTCTCCTCGCCCAGCAGTTTGAATTGTTGGATTAAAGATTTTGGACA  394
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTCCACGCCCAGCAGTTTGAATTGTTGGATTAAAGATTTTGGACA  392

seq1  TTTTTCTACTTTATCTTTTCTATTAAGATAGAAAGAAGATAGCCTATTAT  444
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTACTTTATCTTTTCTATTAAGATAGAAAGAAGATAGCCTATTAT  442

seq1  TCAAATTTACTCAGAAAATTATTTTATAGTCAGTCATGGCTGGAATGCAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTTACTCAGAAAATTATTTTATAGTCAGTCATGGCTGGAATGCAG  492

seq1  ATATAAAAAAA-TCAGATTGTTTGGAACTGAAAA-AAAAAGA-TAAAAAG  541
      ||||||||||| ||| |||||||| |||||||||  |||||| |||||||
seq2  ATATAAAAAAATTCAAATTGTTTGAAACTGAAAATTAAAAGATTAAAAAG  542

seq1  TTTAAGAAACTCTTTAAAAATTTCCCTTTTCAAAACTGGCTGGCCATTCA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAAACTCTTTAAAAATTTCCCTTTTCAAAACTGGCTGGCCATTCA  592

seq1  TACAGCTCATGAATCTTAAGG-TTTAACAATATAAGTGAGTAGCCTCAGC  640
      || |||||||||||||||||| ||||||| ||||| ||| ||||||||||
seq2  TATAGCTCATGAATCTTAAGGTTTTAACAGTATAAATGAATAGCCTCAGC  642

seq1  TTATTTCAGTTTGTCTTAAATTTAATTTAGGTTTAATCATGTGTCTATAG  690
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTATTTCAGTTTGTCTTTAATTTAATTTAGGTTTAATCATGTGTCTATAG  692

seq1  ACCTGTACTTTTATCATCGTGTTATTTTTCCTTATAACTTAACTGTTAAC  740
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACCTGTACTTTTATCATCGTGTTATTTTTCCTTATAGCTTAACTGTTAAC  742

seq1  ATTAATAGACCTCAAAAAAATAAATACATTTAAATCCGATGAGCACAAGA  790
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATTAATAGACCTCAAAAAAATAAATACATTTAAATCCGATGAGCAC-AGA  791

seq1  TGTTCAGAATTGTTAGCAAACGTCTTGCTTTTGTTACTGTAGCTTCTAGG  840
      || |||||||||||||| |||||||||| ||||| ||||||||||||| |
seq2  TGCTCAGAATTGTTAGC-AACGTCTTGC-TTTGTCACTGTAGCTTCTA-G  838

seq1  CCCCAAGTACAGCCATTCTGGGGATTTCTGTTAGCGCCGAAG  882
      ||||||||||||||||||| | ||||||||||||||||||||
seq2  CCCCAAGTACAGCCATTCT-GAGATTTCTGTTAGCGCCGAAG  879

seq1: chr5_15112770_15113183
seq2: B6Ng01-081K08.g_21_431

seq1  GGTGGGCATCCCTGCACATGTGCCTGTGGGTAGCTGACAGATCAGCTGGT  50
      ||||||||||||||||||||||||||| |||| |||||||||||||||||
seq2  GGTGGGCATCCCTGCACATGTGCCTGT-GGTATCTGACAGATCAGCTGGT  49

seq1  TTAAAAGCAAGGCTGGTGGTCTAGTCAATCATGGTCGCTGTTCTAGTGCT  100
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTAAAAGCAAGGCTGGTGGTCTAGTCAATCATGGTCGCTGTTCTGGTGCT  99

seq1  AAACCAGATTCTGGAGAAAGCTCTATTGTTGTTAAGACTTGAGAGGAGCT  150
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGATTCTGGAGAAAGCTCTATTGTTGTTAAGACTTGAGAGGAGCT  149

seq1  TGGTGGCTGATTATGGGATGGATCATCGGGTGGGGTAGTCTCTGGATGGT  200
      ||||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  TGGTGGCTGATTATGGGATGGATCCCCGGGTGGGGTAGTCTCTGGATGGT  199

seq1  CCATCCTTTCTTCTTAGCTTTGTCTCCGTAACTCCTTCCATGGCTTTTTT  250
      |||||||||| |||||||||||||||||||||||||||||||| | ||||
seq2  CCATCCTTTCGTCTTAGCTTTGTCTCCGTAACTCCTTCCATGGGTATTTT  249

seq1  GTTCCCTATTCTGACACTACTGCATATGCCAGCAAGATTTTGCTGAAAGG  300
      ||||||||||||||||||||||||||||||||  |||||| |||||||||
seq2  GTTCCCTATTCTGACACTACTGCATATGCCAGTTAGATTTAGCTGAAAGG  299

seq1  ACCTTGATATAGCTGTCTTGTGAGGCTATGCCAGTGCCTGGCAAACACAG  350
      |||||||||||||||||||||||||||| |||||| ||||||||  ||| 
seq2  ACCTTGATATAGCTGTCTTGTGAGGCTAAGCCAGTACCTGGCAA--ACAT  347

seq1  AAGTGGATGCTCACAGTCATCTATAGGATGGAGCACAGGGCCTCCAATGG  400
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAGTGGATGCTCACAGTCATTTATAGGATGGAGCACAGGGCCTCCAATGG  397

seq1  AGAAGCTAGAGAAA  414
      ||||||||||||||
seq2  AGAAGCTAGAGAAA  411