BAC Information

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BAC

Clone NameB6Ng01-082A13
Chromosome5 (Build37)
Map Location 127,640,794 - 127,786,627
singlet/doubletdoublet
Overlap geneTmem132c
Upstream geneLOC100040327
Downstream geneSlc15a4, Glt1d1, Tmem132d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082A13.bB6Ng01-082A13.g
ACCDH896708DH896709
length1,0771,166
definitionDH896708|Mus musculus domesticus DNA, BAC clone: B6Ng01-082A13, 5' end.DH896709|Mus musculus domesticus DNA, BAC clone: B6Ng01-082A13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,640,794 - 127,641,892)(127,785,461 - 127,786,627)
sequence
gaattctcaactttgagctctggcaggccaagttcatgcttgaaggtact
gaccaccagatggcagcatactgtggcactcaacccaccttttgggtgaa
tcagctttgtggctgactgcctcatgttcaatcagagaccaaaaaaagat
gaagctgaatgaactatcacgtgacccatcaattaaaaatcactaaatgg
gtctggagcagtgtctcaggagttaagtacaccctgggtgatcgtccaaa
ggaactgggttcagttcccagtacctacatggtgactcccacatggtgac
aaccatttgtaattcttgttccagggaatccaacaccctctctgacctct
cctggcactggacagatacggtgcacagacacacatgcaggcaaaatatc
cgtacacgtagaaatatttttaaagcttagaaattttaataagtggatat
tcctgaatttcagattgtgcatgagagccaagaagaaagttcagaagaag
gtgcctgcctaagccatcacctctcatgacaccgtgggctaaaaatggct
gaacatggacaaactgatctctacccactttgcttacagagcttggctac
agagtagacaaacatgtaagatgtacttgtcgattgaaataacaaagaat
tgaccattaataataacaatcacatgtttttattggacacttaactctat
gccagaacagttctatgtggattttaaggcacatggatcatgccattggc
tgcagggactgtgcaacaataacagagaaagggttccgtgtgggtggtag
ctctcgcctgcaatctcaattcaagaggagtctctggaattcaaggttgc
tctgactacatggcaagagccatgctagcttagctaaaaagagagaccct
gcctccaagatggaagtgaaaggaagaagggaagtaggaaagaggatggg
aagaaagaaaaggcctgctagatgtttgtagagatgcaagctgaagatca
gactaataactacttgaaataatttagcagcagctcactgtaaaacattg
gcctttgctttaaaaccccttagctat
gaattccccatctctatttgtcaacttgtctttctcttcttttaaatcta
actcatccttttctcttcaaggttgggtggtttctgatttccagggctct
aagtccgaagcttgtcatgccagcctggaaagaggtcagagtggagacgg
aatgaactccttccatgcacagccacagctagagcacccgtggaacacag
tgagaagaggtgagcacacaagtcaatccccagccctgccttctgcaggg
gacagatgtgggttcctatcttctcgcatttcacaaccaagctggatcct
tgggccttttgcctaatgattggcacttcccatgtgtgccctgctgtgag
ggagcggaaatactaccaaggcggcatagggtcaaacagatggctggcca
ggatggtttttaaatctcagttggcttgctttattcctgagcatagaaac
aatactgaaagaccatttgggtaaatagctatgcatttgagaaagaaaga
aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaa
gaaagaaagaaagaaagaaagaaagaggatacagatttgtcatttaactt
gtaaagccaaataacagggttgacttattaacctatcttaaagaatggtc
tggttggaaacagtaactcgggtttaaatatagagtcccagctgggatgt
ctgccttgtgtgattactcaactagagacactgggttaggaaatggacct
gggatgtctgcttagttcccctaccacagagcagagccggagcatagaaa
acattctcacacaaagctccctgatgacggtgtctctaaatgagtaagta
tctgtttacatatgcacctatttaaattcactatcaagggcatgagtcta
cttttataaatttagcgtcctcccatcgaatgagcaaactcacaaacatt
ctatttttatccactgcagggtatgattagtatttcaccagagccacttt
aaacatgcattgtacagcactcagacaagcggtttctagagtgaagcttg
gttttttttatttagaacacaaaaatattaatgggaaaattactcctgac
gttaaccccgatactctacgaaggccaagcttactgtttccccatgatct
atttattgagtggcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_127640794_127641892
seq2: B6Ng01-082A13.b_50_1126

seq1  GAATTCTCAACTTTGAGCTCTGGCAGGCCAAGTTCATGCTTGAAGGTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAACTTTGAGCTCTGGCAGGCCAAGTTCATGCTTGAAGGTACT  50

seq1  GACCACCAGATGGCAGCATACTGTGGCACTCAACCCACCTTTTGGGTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACCAGATGGCAGCATACTGTGGCACTCAACCCACCTTTTGGGTGAA  100

seq1  TCAGCTTTGTGGCTGACTGCCTCATGTTCAATCAGAGACCAAAAAAAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTTGTGGCTGACTGCCTCATGTTCAATCAGAGACCAAAAAAAGAT  150

seq1  GAAGCTGAATGAACTATCACGTGACCCATCAATTAAAAATCACTAAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGAATGAACTATCACGTGACCCATCAATTAAAAATCACTAAATGG  200

seq1  GTCTGGAGCAGTGTCTCAGGAGTTAAGTACACCCTGGGTGATCGTCCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAGCAGTGTCTCAGGAGTTAAGTACACCCTGGGTGATCGTCCAAA  250

seq1  GGAACTGGGTTCAGTTCCCAGTACCTACATGGTGACTCCCACATGGTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGGGTTCAGTTCCCAGTACCTACATGGTGACTCCCACATGGTGAC  300

seq1  AACCATTTGTAATTCTTGTTCCAGGGAATCCAACACCCTCTCTGACCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTTGTAATTCTTGTTCCAGGGAATCCAACACCCTCTCTGACCTCT  350

seq1  CCTGGCACTGGACAGATACGGTGCACAGACACACATGCAGGCAAAATATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCACTGGACAGATACGGTGCACAGACACACATGCAGGCAAAATATC  400

seq1  CGTACACGTAGAAATATTTTTAAAGCTTAGAAATTTTAATAAGTGGATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACACGTAGAAATATTTTTAAAGCTTAGAAATTTTAATAAGTGGATAT  450

seq1  TCCTGAATTTCAGATTGTGCATGAGAGCCAAGAAGAAAGTTCAGAAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAATTTCAGATTGTGCATGAGAGCCAAGAAGAAAGTTCAGAAGAAG  500

seq1  GTGCCTGCCTAAGCCATCACCTCTCATGACACCGTGGGCTAAAAATGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGCCTAAGCCATCACCTCTCATGACACCGTGGGCTAAAAATGGCT  550

seq1  GAACATGGACAAACTGATCTCTACCCACTTTGCTTACAGAGCTTGGCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGGACAAACTGATCTCTACCCACTTTGCTTACAGAGCTTGGCTAC  600

seq1  AGAGTAGACAAACATGTAAGATGTACTTGTCGATTGAAATAACAAAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGACAAACATGTAAGATGTACTTGTCGATTGAAATAACAAAGAAT  650

seq1  TGACCATTAATAATAACAATCACATGTTTTTATTGGACACTTAACTCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATTAATAATAACAATCACATGTTTTTATTGGACACTTAACTCTAT  700

seq1  GCCAGAACAGTTCTATGTGGATTTTAAGGCACATGGATCATGCCATTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAACAGTTCTATGTGGATTTTAAGGCACATGGATCATGCCATTGGC  750

seq1  TGCAGGGACTGTGCAACAATAACAGAG-AAGGGTTCCGTGTGGGTGGTAG  799
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGCAGGGACTGTGCAACAATAACAGAGAAAGGGTTCCGTGTGGGTGGTAG  800

seq1  CTCTCGCCTGCAATCTCAATTCAAGAGGAGTCTCTGGAATTCAAGGTTGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGCCTGCAATCTCAATTCAAGAGGAGTCTCTGGAATTCAAGGTTGC  850

seq1  TCTGACTACATGGCAAGAGCCATGCTAGCTTAGGCTAAAAAGAGAGACCC  899
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCTGACTACATGGCAAGAGCCATGCTAGCTTA-GCTAAAAAGAGAGACCC  899

seq1  TGCCTCCAAGATGGAAGGTGAAAGGGAAGAAGGGGAAGGTAGGAAAGAGG  949
      |||||||||||||||| |||||| ||||||||||  | ||||||||||||
seq2  TGCCTCCAAGATGGAA-GTGAAA-GGAAGAAGGG--AAGTAGGAAAGAGG  945

seq1  ATGGGAAGAAAAGGAAAAAGGGCCCTGCTTAGAATGTTTGTAGAGATTGG  999
      |||||||||||  |||||   | ||||| ||| ||||||||||||||  |
seq2  ATGGGAAGAAA--GAAAA---GGCCTGC-TAG-ATGTTTGTAGAGAT--G  986

seq1  CAAGGCTGAAGGATCAGGACTAAATAACTACTTGAAAATTAATTTAGCAG  1049
      ||| |||||| ||||| |||| |||||||||||||||  |||||||||||
seq2  CAA-GCTGAA-GATCA-GACT-AATAACTACTTGAAA--TAATTTAGCAG  1030

seq1  CAAGCTCACTGTATACACATTGGCTTTTGGCTTTAAAACCACTTAGCTAT  1099
      | ||||||||||| | |||||||| ||| ||||||||||| |||||||||
seq2  C-AGCTCACTGTA-AAACATTGGCCTTT-GCTTTAAAACCCCTTAGCTAT  1077

seq1: chr5_127785461_127786627
seq2: B6Ng01-082A13.g_70_1235 (reverse)

seq1  TTGCCCAACTCATTAAATTAGATCAATGTGGGGAAACATGTAAGCTT-GC  49
      |||||  ||||| |||| |||||||   |||||||||| |||||||| ||
seq2  TTGCC--ACTCAATAAA-TAGATCA---TGGGGAAACA-GTAAGCTTGGC  43

seq1  CTCTGT--AGTATCGGGGTTTAACCGTTCAGAGTAATTTT-CCATT-ATA  95
      ||  ||  ||||||||||||  | |||   |||||||||| ||||| |||
seq2  CTTCGTAGAGTATCGGGGTT--AACGTCAGGAGTAATTTTCCCATTAATA  91

seq1  ATTTTGTGTTCTAAATAAATAGAACC-AGCTTCACTCTAGAAA-CGCTTG  143
       |||||||||||||||||| | |||| |||||||||||||||| ||||||
seq2  TTTTTGTGTTCTAAATAAAAAAAACCAAGCTTCACTCTAGAAACCGCTTG  141

seq1  TCTGAGTGCTGTACAATGCATGTTT-AAGTGGCTCTGGTGAAATTACTAA  192
      ||||||||||||||||||||||||| ||||||||||||||||| ||||||
seq2  TCTGAGTGCTGTACAATGCATGTTTAAAGTGGCTCTGGTGAAA-TACTAA  190

seq1  TCATACCCCTGCAGTGGAT-AAAATAGAATTGTTTGTGAGTTTTGCTCAT  241
      ||||| ||||||||||||| ||||||||| |||||||||| |||||||||
seq2  TCATA-CCCTGCAGTGGATAAAAATAGAA-TGTTTGTGAG-TTTGCTCAT  237

seq1  TCGATGGGAGGACGCTAAATTTATAAAAGTAGACTCATGCCCTTGATAGT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATGGGAGGACGCTAAATTTATAAAAGTAGACTCATGCCCTTGATAGT  287

seq1  GAATTTAAATAGGTGCATATGTAAACAGATACTTACTCATTTAGAGACAC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTAAATAGGTGCATATGTAAACAGATACTTACTCATTTAGAGACAC  337

seq1  CGTCATCAGGGAGCTTTGTGTGAGAATGTTTTCTATGCTCCGGCTCCTGC  391
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CGTCATCAGGGAGCTTTGTGTGAGAATGTTTTCTATGCTCCGGCT-CTGC  386

seq1  TCTGTGGTAGGGGAACTAAGCAGACATCCCAGGTCCATTTCCTAACCCAG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGTAGGGGAACTAAGCAGACATCCCAGGTCCATTTCCTAACCCAG  436

seq1  TGTCTCTAGTTGAGTAATCACACAAGGCAGACATCCCAGCTGGGACTCTA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTAGTTGAGTAATCACACAAGGCAGACATCCCAGCTGGGACTCTA  486

seq1  TATTTAAACCCGAGTTACTGTTTCCAACCAGACCATTCTTTAAGATAGGT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAACCCGAGTTACTGTTTCCAACCAGACCATTCTTTAAGATAGGT  536

seq1  TAATAAGTCAACCCTGTTATTTGGCTTTACAAGTTAAATGACAAATCTGT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGTCAACCCTGTTATTTGGCTTTACAAGTTAAATGACAAATCTGT  586

seq1  ATCC----TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  637
      ||||    ||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  636

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCAAATGCAT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCAAATGCAT  686

seq1  AGCTATTTACCCAAATGGTCTTTCAGTATTGTTTCTATGCTCAGGAATAA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTTACCCAAATGGTCTTTCAGTATTGTTTCTATGCTCAGGAATAA  736

seq1  AGCAAGCCAACTGAGATTTAAAAACCATCCTGGCCAGCCATCTGTTTGAC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCCAACTGAGATTTAAAAACCATCCTGGCCAGCCATCTGTTTGAC  786

seq1  CCTATGCCGCCTTGGTAGTATTTCCGCTCCCTCACAGCAGGGCACACATG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGCCGCCTTGGTAGTATTTCCGCTCCCTCACAGCAGGGCACACATG  836

seq1  GGAAGTGCCAATCATTAGGCAAAAGGCCCAAGGATCCAGCTTGGTTGTGA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGCCAATCATTAGGCAAAAGGCCCAAGGATCCAGCTTGGTTGTGA  886

seq1  AATGCGAGAAGATAGGAACCCACATCTGTCCCCTGCAGAAGGCAGGGCTG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCGAGAAGATAGGAACCCACATCTGTCCCCTGCAGAAGGCAGGGCTG  936

seq1  GGGATTGACTTGTGTGCTCACCTCTTCTCACTGTGTTCCACGGGTGCTCT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGACTTGTGTGCTCACCTCTTCTCACTGTGTTCCACGGGTGCTCT  986

seq1  AGCTGTGGCTGTGCATGGAAGGAGTTCATTCCGTCTCCACTCTGACCTCT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGGCTGTGCATGGAAGGAGTTCATTCCGTCTCCACTCTGACCTCT  1036

seq1  TTCCAGGCTGGCATGACAAGCTTCGGACTTAGAGCCCTGGAAATCAGAAA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGCTGGCATGACAAGCTTCGGACTTAGAGCCCTGGAAATCAGAAA  1086

seq1  CCACCCAACCTTGAAGAGAAAAGGATGAGTTAGATTTAAAAGAAGAGAAA  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCAACCTTGAAGAGAAAAGGATGAGTTAGATTTAAAAGAAGAGAAA  1136

seq1  GACAAGTTGACAAATAGAGATGGGGAATTC  1167
      ||||||||||||||||||||||||||||||
seq2  GACAAGTTGACAAATAGAGATGGGGAATTC  1166