BAC Information

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BAC

Clone NameB6Ng01-082K06
Chromosome5 (Build37)
Map Location 18,072,285 - 18,180,670
singlet/doubletdoublet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082K06.bB6Ng01-082K06.g
ACCDH897136DH897137
length1,1021,135
definitionDH897136|Mus musculus domesticus DNA, BAC clone: B6Ng01-082K06, 5' end.DH897137|Mus musculus domesticus DNA, BAC clone: B6Ng01-082K06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,072,285 - 18,073,405)(18,179,511 - 18,180,670)
sequence
gaattcacagaagaacccaattccattgccatgtacttgctacactgact
cccacctcactgactctctccctgcattgctcttaaatagcttctctttc
cagtgctgttctcatgggaattgggcatataatatctctgtcaaatattt
tttcattcatcacttcatcttttcctcaattagatgttattgtttgggat
taaaacagtgtactataggatttcagccaaaagggttaaaggtgtgtact
aaaaatatacctgtatcccagtcaaatcacacagaccaagaaggtctttg
gatgtgatcagaacagccatgttgctggattaatattcttattccattta
gtagttgagagtctttcaaaccttggtcagtataatggcatcatttctta
cctggcaattcactctctattctggatacctctggcactttcactaaact
gagatgtacttttaaatggaatgaccaaagatgttactgtctggcagaaa
aagaaaatatttattggcttttaatcttacccagaaaatattcagagttt
ggtagtagtcttttcacaacctgtttgaattgcctccaaaattataaaat
tcaaatttctaaagggaaatccaacctcactggattcttagcatgtctat
tttttctctatcaagaatttttgtctctacattactttactgtgctgtcc
actcatttcatccttgaaactgggttttaatgtaaataaatctctaaatt
actggtggaaaaaaagaaaaaaatcatcttaatttctcattctctttttc
tatcctcatttttttcctcctcaaacctctgctttttttttttttttttt
tgggttgtttaaatttttattaattaactgtatgtgtcaacattaaatgt
tgcagtcaagtttcccctcattcgatgtgttttgataacatttctttttt
aattagatactttatttaacatttcaaatgttatcccttttcccggttct
gctcaaaaactcctatctcctgactcccaaacttctgcttttaaagcagt
ttaaagtgtggtctcagtatgacagtggtcagtgtcatcacttgcctttc
aa
gaattctctaggccaagacaatgctgacatgttagaagagcagaatggat
gacagtagcaattgaaattaaaaaaaaaaaaacttacataaagattttta
ggatgccataaggacattaaaattggagaataaaatcagagaaagtgaca
agccagggagcaaaaataaataactacttatgaagaataatttgaatcct
atgggtcaagtaaactagttaggaatgtagaggaaagtaccacactcatt
ataaaaatattcttttaaatttggagaaagaaaatgcgtcattttctaac
ttacacgggactggtaaaaggagatggcacagagttctagctttagggtg
gtatctctcgggattgataatgagttttatacgaaggttaaatgaaaatt
ctcaaacaagcatcccacactcttccttgagcaggatactctttcctaaa
atgtcaaataccagaaaaggaaattctcaaagataaaaatggatattcct
acactaaatagcctatatttattaaataattgttatctatggaaaaaaga
tgtaaagtatttgttcaatatatgaatgctatgcctcaagggactaaaga
agcagctattcacacataaatgatatcagcaagccttggcttcagaacta
cctggtgttaaggaaagaaaatatgaacaaccaaaactaatcccaatgca
cttcaaaatctatacgttaaacaaaaaagaaaaagaaaaacagtagaagc
cttgtgtgaaaatgaaaacaaaggaaagagagagaaagagaaacaagaga
atctgtgttcattgacatggggaagagaattgaaacttgcaactacgtaa
ttatgagagccaagaggcacatgttgtgctttcgggaactgagtgccaaa
aggagttaaatggagcctaaaggagtcaactcacttctacatatttttct
aacagaaaagagaattgagagattatataccaagtgaggagtttctttag
atgaggaatatgggtaccacataccttgatgagactagtgaagagaaatc
atgatattaaactcctagcactagaacaggaagagaattggaatagataa
ctaaatgtagtcttggtttttctgacgttattgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18072285_18073405
seq2: B6Ng01-082K06.b_45_1146

seq1  GAATTCACAGAAGAACCCAATTCCATTGCCATGTACTTGCTACACTGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAAGAACCCAATTCCATTGCCATGTACTTGCTACACTGACT  50

seq1  CCCACCTCACTGACTCTCTCCCTGCATTGCTCTTAAATAGCTTCTCTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTCACTGACTCTCTCCCTGCATTGCTCTTAAATAGCTTCTCTTTC  100

seq1  CAGTGCTGTTCTCATGGGAATTGGGCATATAATATCTCTGTCAAATATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTGTTCTCATGGGAATTGGGCATATAATATCTCTGTCAAATATTT  150

seq1  TTTCATTCATCACTTCATCTTTTCCTCAATTAGATGTTATTGTTTGGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCATCACTTCATCTTTTCCTCAATTAGATGTTATTGTTTGGGAT  200

seq1  TAAAACAGTGTACTATAGGATTTCAGCCAAAAGGGTTAAAGGTGTGTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAGTGTACTATAGGATTTCAGCCAAAAGGGTTAAAGGTGTGTACT  250

seq1  AAAAATATACCTGTATCCCAGTCAAATCACACAGACCAAGAAGGTCTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATACCTGTATCCCAGTCAAATCACACAGACCAAGAAGGTCTTTG  300

seq1  GATGTGATCAGAACAGCCATGTTGCTGGATTAATATTCTTATTCCATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGATCAGAACAGCCATGTTGCTGGATTAATATTCTTATTCCATTTA  350

seq1  GTAGTTGAGAGTCTTTCAAACCTTGGTCAGTATAATGGCATCATTTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTGAGAGTCTTTCAAACCTTGGTCAGTATAATGGCATCATTTCTTA  400

seq1  CCTGGCAATTCACTCTCTATTCTGGATACCTCTGGCACTTTCACTAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCAATTCACTCTCTATTCTGGATACCTCTGGCACTTTCACTAAACT  450

seq1  GAGATGTACTTTTAAATGGAATGACCAAAGATGTTACTGTCTGGCAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTACTTTTAAATGGAATGACCAAAGATGTTACTGTCTGGCAGAAA  500

seq1  AAGAAAATATTTATTGGCTTTTAATCTTACCCAGAAAATATTCAGAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATATTTATTGGCTTTTAATCTTACCCAGAAAATATTCAGAGTTT  550

seq1  GGTAGTAGTCTTTTCACAACCTGTTTGAATTGCCTCCAAAATTATAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTAGTCTTTTCACAACCTGTTTGAATTGCCTCCAAAATTATAAAAT  600

seq1  TCAAATTTCTAAAGGGAAATCCAACCTCACTGGATTCTTAGCATGTCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTTCTAAAGGGAAATCCAACCTCACTGGATTCTTAGCATGTCTAT  650

seq1  TTTTTCTCTATCAAGAATTTTTGTCTCTACATTACTTTACTGTGCTGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCTATCAAGAATTTTTGTCTCTACATTACTTTACTGTGCTGTCC  700

seq1  ACTCATTTCATCCTTGAAACTGGGTTTTAATGTAAATAAATCTCTAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTTCATCCTTGAAACTGGGTTTTAATGTAAATAAATCTCTAAATT  750

seq1  ACTGGTGGAAAAAAAGAAAAAAATCATCTTAATTTCTCATTCTCTTTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGGAAAAAAAGAAAAAAATCATCTTAATTTCTCATTCTCTTTTTC  800

seq1  TATCCTCATTTTTTTCCTCCTCAAACCTCTGCTTTTTTTTTTTTTTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTCATTTTTTTCCTCCTCAAACCTCTGCTTTTTTTTTTTTTTTTTT  850

seq1  TGGGTTGTTTACATTTTTATTATTTAACTGTATGTGTCAACATTAAATGT  900
      ||||||||||| |||||||||| |||||||||||||||||||||||||||
seq2  TGGGTTGTTTAAATTTTTATTAATTAACTGTATGTGTCAACATTAAATGT  900

seq1  TGCAGTCCAAGTTTCCCCTCA-TCGATGTGTTTTGATAACATTTCTTTTT  949
      |||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  TGCAGT-CAAGTTTCCCCTCATTCGATGTGTTTTGATAACATTTCTTTTT  949

seq1  TTAAATTAGATAC-TTATTT-ACATTTCAAATGTTATCCCTTTTCCCGGT  997
      |  |||||||||| |||||| |||||||||||||||||||||||||||| 
seq2  T--AATTAGATACTTTATTTAACATTTCAAATGTTATCCCTTTTCCCGG-  996

seq1  TTCTGCTCCAAAAACTCCCTATCTCCCTGACTCCCCCAAACCTCTGCCTT  1047
      ||||||| |||||||| ||||||| |||||||  ||||||| |||||  |
seq2  TTCTGCT-CAAAAACT-CCTATCT-CCTGACT--CCCAAACTTCTGC--T  1039

seq1  TTTAAAAGGCAGTCTTTAAAAGTGTGGTCTTCAGTATGACAGGTGGGTTC  1097
      ||||||  ||||   || ||||||||||| ||||||||||| ||||  ||
seq2  TTTAAA--GCAG---TTTAAAGTGTGGTC-TCAGTATGACA-GTGG--TC  1080

seq1  AGTGTCATCAACCTTGCTTTTCAA  1121
      ||||||||||  ||||| ||||||
seq2  AGTGTCATCA--CTTGCCTTTCAA  1102

seq1: chr5_18179511_18180670
seq2: B6Ng01-082K06.g_65_1199 (reverse)

seq1  TTCAATAACGTCAGAAATACACAGACTGTAACATTTAATGTTATCTATTC  50
      ||||||||||||||||| ||  |||||   |||||||  |||||||||||
seq2  TTCAATAACGTCAGAAAAACCAAGACT---ACATTTA--GTTATCTATTC  45

seq1  ACAATTTCTCTTCCCTGTATCCTATGTTGCCTAGGAGTTTAATTATCATG  100
       ||| |||||||||   | | ||| ||   |||||||||||| |||||||
seq2  -CAA-TTCTCTTCC---TGTTCTA-GT--GCTAGGAGTTTAA-TATCATG  86

seq1  ATTTTCCTCTTTCACCTAGTTCTCATCAAGGTATGTGGTAACCCATAATT  150
      ||||  ||| |||| |||| ||||||||||||||||||| |||||| |||
seq2  ATTT--CTC-TTCA-CTAG-TCTCATCAAGGTATGTGGT-ACCCAT-ATT  129

seq1  CCTCATCTTAAAGAAAACTCCTCACTTGGTATATAATCTCTCAATTCTCC  200
      ||||||| ||||| |||||||||||||||||||||||||||||||||| |
seq2  CCTCATC-TAAAG-AAACTCCTCACTTGGTATATAATCTCTCAATTCT-C  176

seq1  TTTTCTGTTAGAAAAATATGTAG-AGTGAGTTGACTCCTTTAGGCTCCAT  249
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTTCTGTTAGAAAAATATGTAGAAGTGAGTTGACTCCTTTAGGCTCCAT  226

seq1  TTAACTCCTTTTGGCACTCAGTTCCCGAAAGCACCAACATGTGCCTCTTG  299
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTAACTCCTTTTGGCACTCAGTTCCCGAAAGCA-CAACATGTGCCTCTTG  275

seq1  GCTCTCATAATTACGTAGTTGCAAGTTTCAATTTCTCTTCCCCATGTCAA  349
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCTCTCATAATTACGTAGTTGCAAGTTTCAA-TTCTCTTCCCCATGTCAA  324

seq1  TGAACACAGATTCTCTTGTTTCTCTTTCTCTCTCTTTCCTTTGTTTTCAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACAGATTCTCTTGTTTCTCTTTCTCTCTCTTTCCTTTGTTTTCAT  374

seq1  TTTCACACAAGGCTTCTACTGTTTTTCTTTTTCTTTTTTGTTTAACGTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACACAAGGCTTCTACTGTTTTTCTTTTTCTTTTTTGTTTAACGTAT  424

seq1  AGATTTTGAAGTGCATTGGGATTAGTTTTGGTTGTTCATATTTTCTTTCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTGAAGTGCATTGGGATTAGTTTTGGTTGTTCATATTTTCTTTCC  474

seq1  TTAACACCAGGTAGTTCTGAAGCCAAGGCTTGCTGATATCATTTATGTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACCAGGTAGTTCTGAAGCCAAGGCTTGCTGATATCATTTATGTGT  524

seq1  GAATAGCTGCTTCTTTAGTCCCTTGAGGCATAGCATTCATATATTGAACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGCTGCTTCTTTAGTCCCTTGAGGCATAGCATTCATATATTGAACA  574

seq1  AATACTTTACATCTTTTTTCCATAGATAACAATTATTTAATAAATATAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTTACATCTTTTTTCCATAGATAACAATTATTTAATAAATATAGG  624

seq1  CTATTTAGTGTAGGAATATCCATTTTTATCTTTGAGAATTTCCTTTTCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTAGTGTAGGAATATCCATTTTTATCTTTGAGAATTTCCTTTTCTG  674

seq1  GTATTTGACATTTTAGGAAAGAGTATCCTGCTCAAGGAAGAGTGTGGGAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGACATTTTAGGAAAGAGTATCCTGCTCAAGGAAGAGTGTGGGAT  724

seq1  GCTTGTTTGAGAATTTTCATTTAACCTTCGTATAAAACTCATTATCAATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTTGAGAATTTTCATTTAACCTTCGTATAAAACTCATTATCAATC  774

seq1  CCGAGAGATACCACCCTAAAGCTAGAACTCTGTGCCATCTCCTTTTACCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGAGATACCACCCTAAAGCTAGAACTCTGTGCCATCTCCTTTTACCA  824

seq1  GTCCCGTGTAAGTTAGAAAATGACGCATTTTCTTTCTCCAAATTTAAAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCGTGTAAGTTAGAAAATGACGCATTTTCTTTCTCCAAATTTAAAAG  874

seq1  AATATTTTTATAATGAGTGTGGTACTTTCCTCTACATTCCTAACTAGTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTTATAATGAGTGTGGTACTTTCCTCTACATTCCTAACTAGTTT  924

seq1  ACTTGACCCATAGGATTCAAATTATTCTTCATAAGTAGTTATTTATTTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACCCATAGGATTCAAATTATTCTTCATAAGTAGTTATTTATTTTT  974

seq1  GCTCCCTGGCTTGTCACTTTCTCTGATTTTATTCTCCAATTTTAATGTCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTGGCTTGTCACTTTCTCTGATTTTATTCTCCAATTTTAATGTCC  1024

seq1  TTATGGCATCCTAAAAATCTTTATGTAAGTTTTTTTTTTTTTAATTTCAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGCATCCTAAAAATCTTTATGTAAGTTTTTTTTTTTTTAATTTCAA  1074

seq1  TTGCTACTGTCATCCATTCTGCTCTTCTAACATGTCAGCATTGTCTTGGC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTACTGTCATCCATTCTGCTCTTCTAACATGTCAGCATTGTCTTGGC  1124

seq1  CTAGAGAATTC  1160
      |||||||||||
seq2  CTAGAGAATTC  1135