BAC Information

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BAC

Clone NameB6Ng01-082M12
Chromosome9 (Build37)5 (Build37)
Map Location 117,593,518 - 117,594,61171,036,880 - 71,036,987
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRbms3
Downstream geneLOC665840, LOC100039650, LOC100039681, Azi2, 2010110K16Rik, Eomes, Golga4, Itga9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082M12.bB6Ng01-082M12.g
ACCDH897238DH897239
length1,078344
definitionDH897238|Mus musculus domesticus DNA, BAC clone: B6Ng01-082M12, 5' end.DH897239|Mus musculus domesticus DNA, BAC clone: B6Ng01-082M12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(117,593,518 - 117,594,611)(71,036,880 - 71,036,987)
sequence
gaattcagtagtccagctagttacaagttgttgttgttttttttcccctc
ctggcctgaaatatgaacgcaagggcaggaaatatgtctgtgtatcctct
caagaccttgcacggcgcccagcacatggaaagcatttgattgatcgaat
gacgacatgaatgaacactagtttcaacctgatttatttgctcatatacc
ctgccttgctctgcctcacattgatttttacattaaagaactatcatgag
aaatgtccaattagaacattatgacaattctgctaatggcgttcttagga
ggatgcagacatgtgtccttatagcacggagcagaaagacagcagggaat
caggattcaacaaagcaggtacctttaccttgcacagtaacaactaagat
gtatgcaagaataccaaagaacattccagagtttccagaaccttcttgcc
taagaagaccaaatgaagagggtccaatacgtatctcaggacttctcaaa
aactacttgcatttcttaatagaggagtagggagacaggggcttaggaaa
tgccgctgagcttcagagcaagagtgtgaatgctaagcgactcctaagaa
aataaaaacaaagcacttgacaaacgctgagcgttctagcaatgctgagt
aatggttctgccctccaacagagccacagattattaaacagtaacaagtg
aggacttgctcggccccatcagaataaacaacggctccaagtgcctcaga
ggctcgcacgcagcagtggggcttcagaagacacagtatgttacccccac
cccaacttgatgcattcccactgctccatctccatctttggtcccttcct
ttcttccccctcctcacccctcctctgtctgtctcctaacctcgtgatct
ttacatatgaaaaaaaattatccacagtgagacagcgcatcacattgaca
tagatactgagcaagctttaagtgtcctttttgctttaaatttgtcatca
tagtatttatcatcactatattatatgcactattatttggttgcatgcat
gactggtggcctgcatgctcagcgtgca
cctcaaaactgcatttcacactggacctgaaaccccattctgtcgaggct
gtctggccggtgggctctcggcatttgtctatctctgcctgtgaatgctg
gagttacaggcatgtgcagctaaggctgtcttttgtgggtgctagggatt
tgaatccaggtcttgatgcttacatgcctgtgcatgtgcacgtgtgtgtg
tgcataagggatatatatatatatatatgtatatatatatatgtatatat
atatatgtatatatatatatatatatctatatagatctatatatatagta
tatataagtgtatagggaacaatcatatggagatatatgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_117593518_117594611
seq2: B6Ng01-082M12.b_45_1122

seq1  GAATTCAGTAGTCCAGCTAGTTACAAGTTGTTGTTGTTTTTTTTCCCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAGTCCAGCTAGTTACAAGTTGTTGTTGTTTTTTTTCCCCTC  50

seq1  CTGGCCTGAAATATGAACGCAAGGGCAGGAAATATGTCTGTGTATCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTGAAATATGAACGCAAGGGCAGGAAATATGTCTGTGTATCCTCT  100

seq1  CAAGACCTTGCACGGCGCCCAGCACATGGAAAGCATTTGATTGATCGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACCTTGCACGGCGCCCAGCACATGGAAAGCATTTGATTGATCGAAT  150

seq1  GACGACATGAATGAACACTAGTTTCAACCTGATTTATTTGCTCATATACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGACATGAATGAACACTAGTTTCAACCTGATTTATTTGCTCATATACC  200

seq1  CTGCCTTGCTCTGCCTCACATTGATTTTTACATTAAAGAACTATCATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTGCTCTGCCTCACATTGATTTTTACATTAAAGAACTATCATGAG  250

seq1  AAATGTCCAATTAGAACATTATGACAATTCTGCTAATGGCGTTCTTAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCCAATTAGAACATTATGACAATTCTGCTAATGGCGTTCTTAGGA  300

seq1  GGATGCAGACATGTGTCCTTATAGCACGGAGCAGAAAGACAGCAGGGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCAGACATGTGTCCTTATAGCACGGAGCAGAAAGACAGCAGGGAAT  350

seq1  CAGGATTCAACAAAGCAGGTACCTTTACCTTGCACAGTAACAACTAAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTCAACAAAGCAGGTACCTTTACCTTGCACAGTAACAACTAAGAT  400

seq1  GTATGCAAGAATACCAAAGAACATTCCAGAGTTTCCAGAACCTTCTTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCAAGAATACCAAAGAACATTCCAGAGTTTCCAGAACCTTCTTGCC  450

seq1  TAAGAAGACCAAATGAAGAGGGTCCAATACGTATCTCAGGACTTCTCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGACCAAATGAAGAGGGTCCAATACGTATCTCAGGACTTCTCAAA  500

seq1  AACTACTTGCATTTCTTAATAGAGGAGTAGGGAGACAGGGGCTTAGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTTGCATTTCTTAATAGAGGAGTAGGGAGACAGGGGCTTAGGAAA  550

seq1  TGCCGCTGAGCTTCAGAGCAAGAGTGTGAATGCTAAGCGACTCCTAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGCTGAGCTTCAGAGCAAGAGTGTGAATGCTAAGCGACTCCTAAGAA  600

seq1  AATAAAAACAAAGCACTTGACAAACGCTGAGCGTTCTAGCAATGCTGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAACAAAGCACTTGACAAACGCTGAGCGTTCTAGCAATGCTGAGT  650

seq1  AATGGTTCTGCCCTCCAACAGAGCCACAGATTATTAAACAGTAACAAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTCTGCCCTCCAACAGAGCCACAGATTATTAAACAGTAACAAGTG  700

seq1  AGGACTTGCTCGGCCCCATCAGAATAAACAACGGCTCCAAGTGCCTCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTGCTCGGCCCCATCAGAATAAACAACGGCTCCAAGTGCCTCAGA  750

seq1  GGCTCGCACGCAGCAGTGGGGCTTCAGAAGACACAGTATGTTACCCCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCGCACGCAGCAGTGGGGCTTCAGAAGACACAGTATGTTACCCCCAC  800

seq1  CCCAACTTGATGCATTCCCACTGCTCCATCTCCATCTTTGGTCCCTTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTTGATGCATTCCCACTGCTCCATCTCCATCTTTGGTCCCTTCCT  850

seq1  TTCTTCCCCCCTCCTCACCCCTCCTCTGTCTGTCTCCTAACCTCGTGATC  900
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTT-CCCCCTCCTCACCCCTCCTCTGTCTGTCTCCTAACCTCGTGATC  899

seq1  TTTAACATATGAAAAAAAAATTATCCACAGTGAAGACAGCGCATCACATT  950
      ||| ||||||| |||||||||||||||||||| |||||||||||||||||
seq2  TTT-ACATATG-AAAAAAAATTATCCACAGTG-AGACAGCGCATCACATT  946

seq1  GACATAAGATACTGAGCAAAGCTTTAAAGTGTCCTTTTTTGCTTTAAATT  1000
      ||||| ||||||||||| ||||||| |||||||| |||||||||||||||
seq2  GACAT-AGATACTGAGC-AAGCTTT-AAGTGTCC-TTTTTGCTTTAAATT  992

seq1  TGTTCATCATTAGTATTTATCATCACTATTATTATATGCACTATTA-TTG  1049
      || |||||| |||||||||||||||||| ||||||||||||||||| |||
seq2  TG-TCATCA-TAGTATTTATCATCACTA-TATTATATGCACTATTATTTG  1039

seq1  TGTGCATGCCATGGACCTGGGTGGGCCTGCATGCCTCAGCGTGCA  1094
        |||||| ||||   ||||   |||||||||| |||||||||||
seq2  GTTGCATG-CATG--ACTGG--TGGCCTGCATG-CTCAGCGTGCA  1078

seq1: chr5_71036880_71036987
seq2: B6Ng01-082M12.g_285_418 (reverse)

seq1  -------------------------------ACACACATATATATA-TAT  18
                                     | |||| |||||||| |||
seq2  ACACACATATATCTCCATATGATTGTTCCCTATACACTTATATATACTAT  50

seq1  ATATATATATATATATATATATATACGTGTGTATATATACATACATACCT  68
      ||||||| || |||||| |||||||  | | |||||||||||| |||  |
seq2  ATATATAGATCTATATAGATATATA--TATATATATATACATATATATAT  98

seq1  ATGCCTATGTGTATATATATACATATGTATATATAAATAT  108
      || | ||    ||||||||||||||| |||||||| ||||
seq2  ATACATA----TATATATATACATATATATATATATATAT  134