BAC Information

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BAC

Clone NameB6Ng01-082M16
Chromosome5 (Build37)
Map Location 12,094,268 - 12,142,946
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144
Downstream geneLOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082M16.bB6Ng01-082M16.g
ACCDH897244DH897245
length1,1031,167
definitionDH897244|Mus musculus domesticus DNA, BAC clone: B6Ng01-082M16, 5' end.DH897245|Mus musculus domesticus DNA, BAC clone: B6Ng01-082M16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,141,911 - 12,142,946)(12,094,268 - 12,095,459)
sequence
gaattctctgtttagctctgttcttcattctttaatagggttatttggtt
atctggagtataacttcttgagttctttgtatatattggctattagccct
ctatcggatgtacgattggtaaagatcttttcccaatctgttggttgctg
ttttgtcctattgatagtgtcctttgctttacagaagctttgtaatttta
tgaggaggtcccatttgttgattcttgatcttgaacataagccattagtg
ttcctgttcagaaattttcccctgtgcccatgtgtttgtggtttttcccc
acattctcttctattagattcagtgtatctgattttatatggaggtccct
gatccacttggacttgagctctgaacagggagataagaatggatcaattt
gcattcttctacatgttgactgccagttgaaccagttccatttgttgaaa
atgctgtctttttttccactggatggcttctgcttccttgtcaaaattaa
gtgaccacaggtgtgtgggttcatttctgagtcttcaattctatatcatt
gatctacctgcctgtcactgtattgctaactgtgagccatttcttcagct
cctgtctctatatcacattagaaccaaaaatgtagaatgagaggagaaaa
aaagaaagcatcatccaaccagctactatcttctaacaactaaagaaaga
tgtaccttgtcttggactgtgagattgctgtttttgatgctatgtataga
aatatgagacaccagaatgccatgtataatattttccaactggatgtgat
atcatgagttattagaacctaagattaaacaaagctcccttttctctctg
taattcaaatttcatatagcaataaattcacagtagatttgcagtaagta
gtagagaaagtcccttatattacacataatgtaaggatacccaaatgtaa
cactaaaataaattggaatatcttaaagctaaatcagttaaatgcatttc
ctctattggtatcataagtgttcattaaaacaatatgttcatagctataa
tgagagctagccgactccatgaaaggcttcactgcgattagagactagct
taa
gaattcactaacaatgcaacgctcttgaaacttgagtgatctttgaatta
agtaattcattacaattgcaatagaagcaaaatctaggcatattttaatt
cgtaaatccagaccttgccgatgcaatctctttctctcagaacactgtag
aatcgtgatatgtccatatataccaactaatatctattactaagctttca
ggagacaaaagacatgacagttattataagggttctggtgctacagttga
tcccacattcttatatctgtgaaaatttagtttgcaagaacgtgttaacg
acatgtgtatttttcttaatacatgtggggagcgggtgtggcggcagtcc
caaaggcgccagggactgcagctaagtcatatgacttgcacctgacttcc
tcatataagacacaaacatcttgagtgctgtgcaggtgtaccaggataca
ggtgaatctaatttggtggagatttgcccctgctgccctgattagctgaa
gcctcatgactggcgagggggcgtggcctgcagtgcgtggatgagagaga
gtataaaaggagtgagaggcccagggttccggggagatataaacaagaag
aatcaggactgaataaactgctgttagaaggactggtggtcgcgtcgttc
ttgctggtcgagagcaggcgggacaaatacataacgaacttgctcaaaat
agttaaatatcagacgtaaatgttagtaggctacataatactgagtaatc
atgtcatataggaaatgcttaaaggaaagaagtaaagttttatttactta
cacaaaaataaattgagcagaattttattttacaaagacagtataagtaa
attattgtgacttacctaaaaattgatatataggtgtaaaagttttatcc
aaagtattattcagatgtattgaaccagaagatgattatgtcttatgaga
aataatatcaatatatattataaatatccatgatatacattataccatat
gcatacacattttgcatatcacatataaacctcagctaaaacaactagtt
caatagggatcaacaacatgttcacacagatttttgaagactaactggta
tttatagctgaatatttatgttatctcagcttcaagatgggagttactct
tgtacgaaagtgtttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_12141911_12142946
seq2: B6Ng01-082M16.b_123_1144 (reverse)

seq1  CTAGTCTCCTAATCTGCCAGTTTGAAGCCTGTCATGGAGTCGGCCTAGCC  50
      ||||||| ||||||   |||  |||||||| |||||||||||| ||||| 
seq2  CTAGTCT-CTAATC--GCAG--TGAAGCCTTTCATGGAGTCGG-CTAGC-  43

seq1  TTCTCATTATAAGCTTATG-ACATATTTGTTTTAATGAACACTTATGATA  99
       ||||||||| ||| |||| ||||| ||||||||||||||||||||||||
seq2  -TCTCATTAT-AGC-TATGAACATA-TTGTTTTAATGAACACTTATGATA  89

seq1  CCAATTAGA-GAAATGCATTTTAACTTGATTTAGCTTTAAGATATTCCAA  148
      |||| |||| |||||||| |||||| ||||||||||||||||||||||||
seq2  CCAA-TAGAGGAAATGCA-TTTAAC-TGATTTAGCTTTAAGATATTCCAA  136

seq1  TTTATTTTTAGTGTTACATTTTGGGTATCCTTACATTATGTTGTAATATA  198
      |||| ||||||||||||| ||||||||||||||||||||| |||||||||
seq2  TTTA-TTTTAGTGTTACA-TTTGGGTATCCTTACATTATG-TGTAATATA  183

seq1  AGGGACTTTCTCTACTACTTACTGCAAATCTACTGTGAATTTATTGCTAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTTTCTCTACTACTTACTGCAAATCTACTGTGAATTTATTGCTAT  233

seq1  ATG-AATTTGAATTACAGAGAGAAAAGGGAGCTTTGTTTAATCTTAGGTT  297
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTTGAATTACAGAGAGAAAAGGGAGCTTTGTTTAATCTTAGGTT  283

seq1  CTAATAACTCATGATATCACATCCAGTTGGAAAATATTATACATGGCATT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAACTCATGATATCACATCCAGTTGGAAAATATTATACATGGCATT  333

seq1  CTGGTGTCTCATATTTCTATACATAGCATCAAAAACAGCAATCTCACAGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTCTCATATTTCTATACATAGCATCAAAAACAGCAATCTCACAGT  383

seq1  CCAAGACAAGGTACATCTTTCTTTAGTTGTTAGAAGATAGTAGCTGGTTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACAAGGTACATCTTTCTTTAGTTGTTAGAAGATAGTAGCTGGTTG  433

seq1  GATGATGCTTTCTTTTTTTCTCCTCTCATTCTACATTTTTGGTTCTAATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGCTTTCTTTTTTTCTCCTCTCATTCTACATTTTTGGTTCTAATG  483

seq1  TGATATAGAGACAGGAGCTGAAGAAATGGCTCACAGTTAGCAATACAGTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAGAGACAGGAGCTGAAGAAATGGCTCACAGTTAGCAATACAGTG  533

seq1  ACAGGCAGGTAGATCAATGATATAGAATTGAAGACTCAGAAATGAACCCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAGGTAGATCAATGATATAGAATTGAAGACTCAGAAATGAACCCA  583

seq1  CACACCTGTGGTCACTTAATTTTGACAAGGAAGCAGAAGCCATCCAGTGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTGTGGTCACTTAATTTTGACAAGGAAGCAGAAGCCATCCAGTGG  633

seq1  AAAAAAAGACAGCATTTTCAACAAATGGAACTGGTTCAACTGGCAGTCAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGACAGCATTTTCAACAAATGGAACTGGTTCAACTGGCAGTCAA  683

seq1  CATGTAGAAGAATGCAAATTGATCCATTCTTATCTCCCTGTTCAGAGCTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGAAGAATGCAAATTGATCCATTCTTATCTCCCTGTTCAGAGCTC  733

seq1  AAGTCCAAGTGGATCAGGGACCTCCATATAAAATCAGATACACTGAATCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCAAGTGGATCAGGGACCTCCATATAAAATCAGATACACTGAATCT  783

seq1  AATAGAAGAGAATGTGGGGAAAAACCACAAACACATGGGCACAGGGGAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAGAGAATGTGGGGAAAAACCACAAACACATGGGCACAGGGGAAA  833

seq1  ATTTCTGAACAGGAACACTAATGGCTTATGTTCAAGATCAAGAATCAACA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAACAGGAACACTAATGGCTTATGTTCAAGATCAAGAATCAACA  883

seq1  AATGGGACCTCCTCATAAAATTACAAAGCTTCTGTAAAGCAAAGGACACT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGACCTCCTCATAAAATTACAAAGCTTCTGTAAAGCAAAGGACACT  933

seq1  ATCAATAGGACAAAACAGCAACCAACAGATTGGGAAAAGATCTTTACCAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATAGGACAAAACAGCAACCAACAGATTGGGAAAAGATCTTTACCAA  983

seq1  TCGTACATCCGATAGAGGGCTAATAGCCAATATATACAA  1036
      |||||||||||||||||||||||||||||||||||||||
seq2  TCGTACATCCGATAGAGGGCTAATAGCCAATATATACAA  1022

seq1: chr5_12094268_12095459
seq2: B6Ng01-082M16.g_71_1237

seq1  GAATTCACTAACAATGCAACGCTCTTGAAACTTGAGTGATCTTTGAATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAACAATGCAACGCTCTTGAAACTTGAGTGATCTTTGAATTA  50

seq1  AGTAATTCATTACAATTGCAATAGAAGCAAAATCTAGGCATATTTTAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTCATTACAATTGCAATAGAAGCAAAATCTAGGCATATTTTAATT  100

seq1  CGTAAATCCAGACCTTGCCGATGCAATCTCTTTCTCTCAGAACACTGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAATCCAGACCTTGCCGATGCAATCTCTTTCTCTCAGAACACTGTAG  150

seq1  AATCGTGATATGTCCATATATACCAACTAATATCTATTACTAAGCTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGTGATATGTCCATATATACCAACTAATATCTATTACTAAGCTTTCA  200

seq1  GGAGACAAAAGACATGACAGTTATTATAAGGGTTCTGGTGCTACAGTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAAAAGACATGACAGTTATTATAAGGGTTCTGGTGCTACAGTTGA  250

seq1  TCCCACATTCTTATATCTGTGAAAATTTAGTTTGCAAGAACGTGTTAACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACATTCTTATATCTGTGAAAATTTAGTTTGCAAGAACGTGTTAACG  300

seq1  ACATGTGTATTTTTCTTAATACATGTGGGGAGCGGGTGTGGCGGCAGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGTATTTTTCTTAATACATGTGGGGAGCGGGTGTGGCGGCAGTCC  350

seq1  CAAAGGCGCCAGGGACTGCAGCTAAGTCATATGACTTGCACCTGACTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCGCCAGGGACTGCAGCTAAGTCATATGACTTGCACCTGACTTCC  400

seq1  TCATATAAGACACAAACATCTTGAGTGCTGTGCAGGTGTACCAGGATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATAAGACACAAACATCTTGAGTGCTGTGCAGGTGTACCAGGATACA  450

seq1  GGTGAATCTAATTTGGTGGAGATTTGCCCCTGCTGCCCTGATTAGCTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATCTAATTTGGTGGAGATTTGCCCCTGCTGCCCTGATTAGCTGAA  500

seq1  GCCTCATGACTGGCGAGGGGGCGTGGCCTGCAGTGCGTGGATGAGAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATGACTGGCGAGGGGGCGTGGCCTGCAGTGCGTGGATGAGAGAGA  550

seq1  GTATAAAAGGAGTGAGAGGCCCAGGGTTCCGGGGAGATATAAACAAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAAGGAGTGAGAGGCCCAGGGTTCCGGGGAGATATAAACAAGAAG  600

seq1  AATCAGGACTGAATAAACTGCTGTTAGAAGGACTGGTGGTCGCGTCGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGACTGAATAAACTGCTGTTAGAAGGACTGGTGGTCGCGTCGTTC  650

seq1  TTGCTGGTCGAGAGCAGGCGGGACAAATACATAACGAACTTGCTCAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGTCGAGAGCAGGCGGGACAAATACATAACGAACTTGCTCAAAAT  700

seq1  AGTTAAATATCAGACGTAAATGTTAGTAGGCTACATAATACTGAGTAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAATATCAGACGTAAATGTTAGTAGGCTACATAATACTGAGTAATC  750

seq1  ATGTCATATAGGAAATGCTTAAGGGAAAGAAGTAAAGTTTTATTTACTTA  800
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATGTCATATAGGAAATGCTTAAAGGAAAGAAGTAAAGTTTTATTTACTTA  800

seq1  CACAAAAATAAATTGAGCAGAATTTTATTTTACAAAGACAGTATAAGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAATAAATTGAGCAGAATTTTATTTTACAAAGACAGTATAAGTAA  850

seq1  ATTATTGTGACTTACCTAAATAATTGATATATAGGTGTAAAAG-TTTATC  899
      |||||||||||||||||||| |||||||||||||||||||||| ||||||
seq2  ATTATTGTGACTTACCTAAA-AATTGATATATAGGTGTAAAAGTTTTATC  899

seq1  CAAAGTATTATTCAGATGTATTGAACCAGAAGAATGATTATGTCTTATGA  949
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAAAGTATTATTCAGATGTATTGAACCAGAAG-ATGATTATGTCTTATGA  948

seq1  GAAATAATATCAATTATATATTATAAATATCCAATGATATTACATAATAA  999
      ||||||||||||| |||||||||||||||||| |||||| ||||| || |
seq2  GAAATAATATCAA-TATATATTATAAATATCC-ATGATA-TACATTAT-A  994

seq1  CCATATTGCATACACATTTTGCATATCACATATAAA-CTCAGCTAAAACA  1048
      ||||| |||||||||||||||||||||||||||||| |||||||||||| 
seq2  CCATA-TGCATACACATTTTGCATATCACATATAAACCTCAGCTAAAAC-  1042

seq1  AACTAGTTCAAATAGGGATCAAACAACATGTCCACCAACAGATATATGAA  1098
      ||||||||| |||||||||| |||||||||| |||  |||||| | || |
seq2  AACTAGTTC-AATAGGGATC-AACAACATGTTCAC--ACAGATTTTTG-A  1087

seq1  AGACTAAAACCTGGTATTTGTATAGCTGAAATAATTTATGTTATCTACAG  1148
      |||||||   ||||||||  ||||||||||   ||||||||||||| |||
seq2  AGACTAA---CTGGTATT--TATAGCTGAA--TATTTATGTTATCT-CAG  1129

seq1  CTTTAAAAAGGAATGGGAGTTACTCTGGTACGGAAAGTGTTTCA  1192
      ||| ||      |||||||||||||| |||| ||||||||||||
seq2  CTTCAA-----GATGGGAGTTACTCTTGTAC-GAAAGTGTTTCA  1167