BAC Information

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BAC

Clone NameB6Ng01-082P20
Chromosome13 (Build37)5 (Build37)
Map Location 11,511,086 - 11,511,60414,995,050 - 14,996,193
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039648
Downstream geneZp4, Ryr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082P20.bB6Ng01-082P20.g
ACCDH897380DH897381
length9851,127
definitionDH897380|Mus musculus domesticus DNA, BAC clone: B6Ng01-082P20, 5' end.DH897381|Mus musculus domesticus DNA, BAC clone: B6Ng01-082P20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(11,511,086 - 11,511,604)(14,995,050 - 14,996,193)
sequence
gaattcactggtcttaccacgttccccatcatcctgaagcagctggtctg
atagaaagatggaacggccttttaaagatgcagttacagcaccaattagg
tggtaacagcttggaaggctggggtagagttcttcaaaaggcagtatatg
ctttgaatcagcgctcgatatatggtacagtttcacccatcgccaggatt
catgggtccaggaatcaaggggtggaaaagggaatagttccacttactat
cactcctagtgaccctctaggaaaatttttgcttcctgtccccataactc
taggttctgctggcttagaagttttggctccagaggcgggagtgctccta
ccaggagctacaacaaacattccattgaactggaagctcagacttccccc
tggtcattttgggcttctaatgcccttaaaccaacaggctaaaaaaggaa
taacagtgttaggaggggtgatagatccagattaccatggggaaattgga
ttatctcttcacaatggtggtaagcaagattatgtctggagtgtaggaga
tcccttagggcgtctcttagtactaccatgtcctgtgattaaagtcaatg
ggaaactacaacagcctaatccaagcaggatgacaaaggatgcagaccca
tcaggaatgaaggtatgggtcaatcctccaggaaaagagccaagacctgc
tgaggtgctggctgaaggtgaaggaaatacagaatgggtagtagaggaag
gtagttataaataccaattaaagccacgtaaccaattgcagaaacgagga
ttatgaactaatatgaatgccccattgtaaatttacaaatgtgtttgcga
ttgtacgagggatagttatatcatgtcacgcgtattcacaaccttgttat
tgtttcatgtgaacatgagatattgtgtcagtgacaaggggtggattgta
gtgttattcctggtgtcacttgacatattggatga
gaattcaccaggaaagaacaagagcccaaaaggcagaggagaagtgttca
tgggtgcactagccagttacctctggaagagcagctgcatggattcagga
tgcacttcatgcacactgggtgccatgctggatggctgtgtaaagtcatc
tcttactaagtcctaatcaaaatgcttctagagaactccacactgagtca
gggctttctgttcctaagcaaaccacagctctgatctccatctgtttttc
tctgactcttaaaacatccttccaaattgaaaaacaaagcacaaaatcat
cttaattgccttgccaaaggattggaaaggagcaccactttttgttcaga
agacaacttcagaaaacaaaagagaagcctcaaatgagccaaaagccaca
aattgaaaaacaaaagaaaaacaaggctgactgtctactgccaggaggag
ttcaccagggagaggagctctgactccaaaatagtcacttttccattttg
tcaatgatggcaaaaggccatgggtgctgtctaaaggaaggaaaggatgt
tccaggaagaaaacaggtctctttgttgcaagaactgcattctcacttgt
atccaatgctgataactggcagcagaaactctgggagggtcacatctatg
tggtgacacaagaagctttctccagggtctagcacactcttaccagagcc
tcttgccctggttcgctatctcatctaaatgctcactcacattaagggac
aacatggtgtaattggaaatggacagtcacatttacttatagttttggcc
ataactggacaaggagaaagtctcagctacattccaccaggcccatagca
ctctcagaccaaatagaaggatgaaagataggaaaatacacacttcagtg
tcagctgtggcccagtttccaggagatgggagatggtcatttcctccagt
gccagagatgatgccctttggtgggccattttcactcacagttggtagtc
ctgcaggagtctgcttcttatggcccttacagttagcgtgacaactattt
aagaaaaaaacattcaacaagcagagtgatcccctttgtttatttaccag
attaacgatatatgcctagttcagttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_11511086_11511604
seq2: B6Ng01-082P20.b_618_999

seq1  TAGTACTACCATGTCCTGTGATAAAAGTCACTGGGAAACTACAACAGCCC  50
      |||||||||||||||||||||| ||||||| |||||||||||||||||| 
seq2  TAGTACTACCATGTCCTGTGATTAAAGTCAATGGGAAACTACAACAGCCT  50

seq1  AATCCAAGCAGGATGACAAAGGGCATAGATCCATCAGGAATGAAGGTATG  100
      ||||||||||||||||||||||    ||| ||||||||||||||||||||
seq2  AATCCAAGCAGGATGACAAAGGATGCAGACCCATCAGGAATGAAGGTATG  100

seq1  GGTCATTCCTCCAGGAAAAGAGCCAA-----GCTGAGGTGCTTACAGA--  143
      ||||| ||||||||||||||||||||     |||||||||||  | ||  
seq2  GGTCAATCCTCCAGGAAAAGAGCCAAGACCTGCTGAGGTGCTGGCTGAAG  150

seq1  GTGGAAGAAATATTGACTAGGTAGGAGAGTTAGGTAGTTATAAATACCAT  193
      ||| | ||||||  || | ||||| ||||  |||||||||||||||||| 
seq2  GTGAAGGAAATACAGAATGGGTAGTAGAGGAAGGTAGTTATAAATACCAA  200

seq1  CTAAGGACACGTGACCAGTTGCCGAAACAAGGATTATAATCGACATGAGT  243
       ||| | ||||| |||| |||| ||||| |||||||| | | |       
seq2  TTAAAGCCACGTAACCAATTGCAGAAACGAGGATTATGAACTA-------  243

seq1  GCTTCTGTTTTATTTTGTTAGGAATGCATTTGTACAGATATTTGTGTTTT  293
                                                        
seq2  --------------------------------------------------  243

seq1  CTTTCAATTTCTTTAGCATCAATTAAGAGCATATCAATGGTTATCACATT  343
                                    |||| ||||           
seq2  ------------------------------ATATGAATG-----------  252

seq1  TAAGTTTTAGATTCTAAAAGGATGTTTCCCAAGGAACATTTGCCTACTCT  393
                                 |||      |||        | |
seq2  ---------------------------CCC------CAT--------TGT  261

seq1  AAATTTAC-GATGTGCTTATGGTTGTATAAGTGATAGATATATTATGTTG  442
      ||||||||  ||||| ||  | |||||  || ||||| ||||| ||||  
seq2  AAATTTACAAATGTGTTTGCGATTGTACGAGGGATAGTTATATCATGTCA  311

seq1  GGTATATTTATGACCTGGCTATTGTTTTCACTTGAGCATGAGGTATGATT  492
       |  |||| |  |||| | ||||| |||||  ||| |||||| ||    |
seq2  CGCGTATTCACAACCTTGTTATTG-TTTCATGTGAACATGAGATA----T  356

seq1  TGTGTCAAGTGACAAGGGGTGGATTGT  519
      |||||| ||||||||||||||||||||
seq2  TGTGTC-AGTGACAAGGGGTGGATTGT  382

seq1: chr5_14995050_14996193
seq2: B6Ng01-082P20.g_71_1196 (reverse)

seq1  AAACTGAACTAGCTATAATTATCTGTTTTTATCCTTGCTAAATAAACAAA  50
      ||||||||||||  |||  ||||    || |||  || ||||||||||||
seq2  AAACTGAACTAGGCATA--TATC---GTTAATC--TGGTAAATAAACAAA  43

seq1  GGGGATCACTCTGCTTTGTTTGAATGTTTTTTTCTTAAAT-GTTGTCACG  99
      ||||||||||||||||   ||||||||||||||||||||| |||||||||
seq2  GGGGATCACTCTGCTT--GTTGAATGTTTTTTTCTTAAATAGTTGTCACG  91

seq1  CTTAACTGTAAAGGGGCCATAAGAAGCAAGACTCCCTGCAGGAACTACCA  149
      | |||||||||  |||||||||||||| ||||| |||||||| |||||| 
seq2  C-TAACTGTAA--GGGCCATAAGAAGC-AGACT-CCTGCAGG-ACTACC-  134

seq1  AACTGTGAGTGAAAATGGCCCACCCAAAGGGCATCATCTCTGGCACTGGA  199
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AACTGTGAGTGAAAATGGCCCA-CCAAAGGGCATCATCTCTGGCACTGGA  183

seq1  GGAAAATGACCATCTCCCATCTCCTGGAAACTGGGCCCACAGCTGACACT  249
      || |||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GG-AAATGACCATCTCCCATCTCCTGGAAACTGGG-CCACAGCTGACACT  231

seq1  GAAGTGTGTATTTTCCTATCTTTCATCCTTCTATTTGGTCTGAGAGTGCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTGTATTTTCCTATCTTTCATCCTTCTATTTGGTCTGAGAGTGCT  281

seq1  ATGGGCCTGGTGGAATGTAGCTGAGACTTTCTCCTTGTCCAGTTATGGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCCTGGTGGAATGTAGCTGAGACTTTCTCCTTGTCCAGTTATGGCC  331

seq1  AAAACTATAAGTAAATGTGTCTGTCCATTTCCAATTACAACATGTTGTCC  399
      ||||||||||||||||||| ||||||||||||||||||| ||||||||||
seq2  AAAACTATAAGTAAATGTGACTGTCCATTTCCAATTACACCATGTTGTCC  381

seq1  CTTAATGCGAGTGAGCATTTAGATGAGATAGTGAACCAGGGCAAGAGGCT  449
      ||||||| ||||||||||||||||||||||| ||||||||||||||||||
seq2  CTTAATGTGAGTGAGCATTTAGATGAGATAGCGAACCAGGGCAAGAGGCT  431

seq1  TTGGTAAGAGTGTGCTAGACCCTGGAGAAAGCTTCTTGTGTCACCACATA  499
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAAGAGTGTGCTAGACCCTGGAGAAAGCTTCTTGTGTCACCACATA  481

seq1  GATGTGACCCTCCCAGAGTTTCTGCTGCCAGTTATCAGCATTGGATACAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGACCCTCCCAGAGTTTCTGCTGCCAGTTATCAGCATTGGATACAA  531

seq1  GTGAGAATGCAGTTCTTGCAACAAAGAGACCTGTTTTCTTCCTGGAACAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAATGCAGTTCTTGCAACAAAGAGACCTGTTTTCTTCCTGGAACAT  581

seq1  CCTTTCCTTCCTTTAGCCAGCACCCATGGCCTTTTGCCATCATTGACAAA  649
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCTTTCCTTCCTTTAGACAGCACCCATGGCCTTTTGCCATCATTGACAAA  631

seq1  ATGTTAAAGTGACTATTTTGGAGTCAGAGTTCCTCTCCCTTGTGAACTCC  699
      |||  |||||||||||||||||||||||| |||||||||| |||||||||
seq2  ATGGAAAAGTGACTATTTTGGAGTCAGAGCTCCTCTCCCTGGTGAACTCC  681

seq1  TGCTGGCAGTAGACAGCCAGCCTTGTTTTTCTTTTGTTTTTCAATTTGTG  749
      | |||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCCTGGCAGTAGACAGTCAGCCTTGTTTTTCTTTTGTTTTTCAATTTGTG  731

seq1  GCTTTTGGCCCATTTGAGGCTTCTCTTTTGTTTTCTGAAGTTGTCTTCTG  799
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGGCTCATTTGAGGCTTCTCTTTTGTTTTCTGAAGTTGTCTTCTG  781

seq1  AACAAAAAGTGGTGCTCCTTTCCAATCCTTTGGCAAGGCAATTAAGATGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAGTGGTGCTCCTTTCCAATCCTTTGGCAAGGCAATTAAGATGA  831

seq1  TTTTGTGCTTTGTTTTTCAATTTGGAAGGATGTTTTAAGAGTCAGAGAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGCTTTGTTTTTCAATTTGGAAGGATGTTTTAAGAGTCAGAGAAA  881

seq1  AACAGATGGAGATCAGTGCTGTGGTTTGCTTGGGAACAGAAAGCCCTGAC  949
      |||||||||||||||| |||||||||||||| ||||||||||||||||||
seq2  AACAGATGGAGATCAGAGCTGTGGTTTGCTTAGGAACAGAAAGCCCTGAC  931

seq1  TCAGTGTGGAGTTCTCTAGAAGCATTTTGATTAGGACTTAGTAAGAGATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTGGAGTTCTCTAGAAGCATTTTGATTAGGACTTAGTAAGAGATG  981

seq1  ACTTTCCACAGCCATCCAGCATGGCACCCAGTGTGCATGAAGTACATCCT  1049
      ||||| ||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACTTTACACAGCCATCCAGCATGGCACCCAGTGTGCATGAAGTGCATCCT  1031

seq1  GAATCCATGCAGCTGCTCTTCCAGAGGTAACTGGCTAGTGCACCCATGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCATGCAGCTGCTCTTCCAGAGGTAACTGGCTAGTGCACCCATGAA  1081

seq1  CACTTCTCCTCTGCCTTTTGGGCTCTTGTTCTTTCCTGGTGAATT  1144
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTCCTCTGCCTTTTGGGCTCTTGTTCTTTCCTGGTGAATT  1126