BAC Information

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BAC

Clone NameB6Ng01-083F02
Chromosome5 (Build37)
Map Location 52,264,231 - 52,394,731
singlet/doubletdoublet
Overlap genenone
Upstream geneEG624734, LOC666265, LOC100041059, Ppargc1a
Downstream geneDhx15, Sod3, Gm447, LOC100041805, Lgi2, LOC545750, D5Ertd135e, Pi4k2b, Zcchc4, Anapc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083F02.bB6Ng01-083F02.g
ACCDH897612DH897613
length696266
definitionDH897612|Mus musculus domesticus DNA, BAC clone: B6Ng01-083F02, 5' end.DH897613|Mus musculus domesticus DNA, BAC clone: B6Ng01-083F02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,264,231 - 52,264,926)(52,394,466 - 52,394,731)
sequence
gaattcaccagtgtcttgtcagctcatacttcttgcagccagagagcccc
gtgtagtgtagagctcatgcccacttgcccagacatggaacacgcttgct
cagaactggcttaggaacgcagtggatttcactgactgcagaaagggctt
attggcctcattaaaatgatttttactaagatccttaaaaagagggtgag
aaagaacagcaggagagagggaggtcttttttaaaaaaaataacgttttg
agataggggtcttgctatgcactctagactgatcttgaattccttttttt
cctcttttttttattggatattttcttcatttacatttcaaatgctatcc
cttttcctaatttcctcactgaaagtcccctataccctccgtcccctacc
ctgctccccaacccacccactcctgcttcctggccctggcattcccctgt
actggggcatatgatcttgaattctaaactggcctctggaatactggaat
tacaaagttgcaacactgggccctactccagtcatgaagcctggcctttt
ataattaccactttcataatcgcatacttttcttttactaataacattgg
gagggttgtgagtgagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtatgcaagcaatcgggaaatcaacagactggagttccc
tgatcatttgagcatcagtttactgaacagaggtagtttcgttttcaatt
gttccatccctttgctctaacatttaagcactttgattttcccatctcct
caagatggaaatacacttagaaccacacatttcagtcttgataacgtaca
taactcaggaaaggcttcagtgtgcatgtggcagctgtgagttgggtttt
gctctgaagggaattcagtggggtttctgtatttatatattagttgaggg
aagtggggtagtgtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_52264231_52264926
seq2: B6Ng01-083F02.b_46_741

seq1  GAATTCACCAGTGTCTTGTCAGCTCATACTTCTTGCAGCCAGAGAGCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAGTGTCTTGTCAGCTCATACTTCTTGCAGCCAGAGAGCCCC  50

seq1  GTGTAGTGTAGAGCTCATGCCCACTTGCCCAGACATGGAACACGCTTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGTGTAGAGCTCATGCCCACTTGCCCAGACATGGAACACGCTTGCT  100

seq1  CAGAACTGGCTTAGGAACGCAGTGGATTTCACTGACTGCAGAAAGGGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTGGCTTAGGAACGCAGTGGATTTCACTGACTGCAGAAAGGGCTT  150

seq1  ATTGGCCTCATTAAAATGATTTTTACTAAGATCCTTAAAAAGAGGGTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCCTCATTAAAATGATTTTTACTAAGATCCTTAAAAAGAGGGTGAG  200

seq1  AAAGAACAGCAGGAGAGAGGGAGGTCTTTTTTAAAAAAAATAACGTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACAGCAGGAGAGAGGGAGGTCTTTTTTAAAAAAAATAACGTTTTG  250

seq1  AGATAGGGGTCTTGCTATGCACTCTAGACTGATCTTGAATTCCTTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGGGTCTTGCTATGCACTCTAGACTGATCTTGAATTCCTTTTTTT  300

seq1  CCTCTTTTTTTTATTGGATATTTTCTTCATTTACATTTCAAATGCTATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTTTTTTATTGGATATTTTCTTCATTTACATTTCAAATGCTATCC  350

seq1  CTTTTCCTAATTTCCTCACTGAAAGTCCCCTATACCCTCCGTCCCCTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTAATTTCCTCACTGAAAGTCCCCTATACCCTCCGTCCCCTACC  400

seq1  CTGCTCCCCAACCCACCCACTCCTGCTTCCTGGCCCTGGCATTCCCCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCCCAACCCACCCACTCCTGCTTCCTGGCCCTGGCATTCCCCTGT  450

seq1  ACTGGGGCATATGATCTTGAATTCTAAACTGGCCTCTGGAATACTGGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGCATATGATCTTGAATTCTAAACTGGCCTCTGGAATACTGGAAT  500

seq1  TACAAAGTTGCAACACTGGGCCCTACTCCAGTCATGAAGCCTGGCCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGTTGCAACACTGGGCCCTACTCCAGTCATGAAGCCTGGCCTTTT  550

seq1  ATAATTACCACTTTCATAATCGCATACTTTTCTTTTACTAATAACATTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTACCACTTTCATAATCGCATACTTTTCTTTTACTAATAACATTGG  600

seq1  GAGGGTTGTGAGTGAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTGTGAGTGAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  650

seq1  TGTGTGTGTGTGCATGCAATCGGGAGATCAACAGACTGTTGTTCCC  696
      ||||||||| |||| |||||||||| ||||||||||||  ||||||
seq2  TGTGTGTGTATGCAAGCAATCGGGAAATCAACAGACTGGAGTTCCC  696

seq1: chr5_52394466_52394731
seq2: B6Ng01-083F02.g_72_337 (reverse)

seq1  TTACACTACCCCACTTCCCTCAACTAATATATAAATACAGAAACCCCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTACCCCACTTCCCTCAACTAATATATAAATACAGAAACCCCACT  50

seq1  GAATTCCCTTCAGAGCAAAACCCAACTCACAGCTGCCACATGCACACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTCAGAGCAAAACCCAACTCACAGCTGCCACATGCACACTGA  100

seq1  AGCCTTTCCTGAGTTATGTACGTTATCAAGACTGAAATGTGTGGTTCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTCCTGAGTTATGTACGTTATCAAGACTGAAATGTGTGGTTCTAA  150

seq1  GTGTATTTCCATCTTGAGGAGATGGGAAAATCAAAGTGCTTAAATGTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTTCCATCTTGAGGAGATGGGAAAATCAAAGTGCTTAAATGTTAG  200

seq1  AGCAAAGGGATGGAACAATTGAAAACGAAACTACCTCTGTTCAGTAAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGGGATGGAACAATTGAAAACGAAACTACCTCTGTTCAGTAAACT  250

seq1  GATGCTCAAATGATCA  266
      ||||||||||||||||
seq2  GATGCTCAAATGATCA  266