BAC Information

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BAC

Clone NameB6Ng01-083F21
Chromosome5 (Build37)
Map Location 59,546,500 - 59,547,658
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041385, LOC100041396, LOC666499, EG625870
Downstream geneLOC100041425, LOC546866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083F21.bB6Ng01-083F21.g
ACCDH897650DH897651
length1,146632
definitionDH897650|Mus musculus domesticus DNA, BAC clone: B6Ng01-083F21, 5' end.DH897651|Mus musculus domesticus DNA, BAC clone: B6Ng01-083F21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttaaagacattagtagctaaaatattcacctcaaaatacaggaa
gcaataaatctgtaaagacctttatatgctcaggagattggattacttaa
tagagatgaaatcaacaactacacaaacgggaactgcaatagggaatgca
atctgcattatccatcacaagccattggactgccaatatttctactaatg
ttctagtaggaagtgaaaaatccaaaacgaagctgaagttagtcttcaaa
tttgaactgggacttcagccaaagccaaactgggactgcacatacctacc
aatataatgattgctaaaggtatccacaaaaataaactcagaaaaaatca
ggaagaaaacagacacaggagggtgggagaaagtcaaggaagatgagcaa
gggagaaaagcaaatgcaggtggaaaaccaaactgactttaaagatgtca
taaagaagatggagttgttagaatgagtgagagaccacttatagtcattg
ctctttgtaagtccaatcaacttatactattacattgggaatctacttct
aatcactagccagattattaaaaatgaactaaatgataattaaatagatt
tgagattatattgaactgaatccaattttaataagagagagtcaaaagag
ctatacaatatagttgctgcaaatgcagagcaatgaaaagaaatcgaatg
atttgttctgtaatgagaattgcatttatacatgggaaagagaatgaatt
aaatgtatactaaaggacaccaagggattgatctcatagtaaagtgtggt
tctataaaggaagtctatttgaaattcatttaagtactgcattctggttt
agaagatctatttaatatatactattccagaatgtactaaagattcccca
attgctgaatccactcgtttgctatcacttagtccttatcagtaccaaga
aataaccaacaaatatagaaaataaataatgtggagcatccagaaattta
aacattcggagttattttgaagaggtatagaatagatatttctttgagtc
tttggctcatccactggtgaagaaatactttgtatagtgaaatatgaagt
ttggtggatgttacacaggaaatattcaaagttattatatactatt

gaattcaacactaaaaagctgagacagaattgtgagttgagagacatcct
gagctacaaaatagtgtgaatgtgaaaatctatttctctctctctctctc
tctctctctctctctctctctctctctctctctctctctctctctctctc
tccccccacgtctttctttttctcctttttattttttgatatattttttc
atccctgtacaacacacacacctctctataaaagggagcctgtcttcttg
tgtcactcgcccacccccccccctctctcaaaaaaacactcccccgcgat
cgtgcgttagagtgcgcttgatagagtgggcctgtcttctcttgagtgca
ggagtgcgtctcactctcgtgagtttctcttctatacagcagagtgagat
acacagaacatacaaagagagtctctcacaagaaaattgcacttcatgtg
cgctatagacacgtgtcagacacagtgtgtctgctctctggactcatcaa
atctatacgctcagtaatatatactagagcgagagagtgagctcccatag
acagaacatattctctctcgattttctatgtggttctgaccgagagagcg
ctgtatctcagataaataagagacataatgcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_59546500_59547658
seq2: B6Ng01-083F21.b_44_1189 (reverse)

seq1  AATAGT-TATAATAATTTACTTTTGATATTT-CTGTGTAACATCCACCAA  48
      |||||| |||||||    |||||  |||||| ||||||||||||||||||
seq2  AATAGTATATAATA----ACTTTGAATATTTCCTGTGTAACATCCACCAA  46

seq1  ACTTTCATTATTTCACTATACAAAGTATTTCTTCAACCCAGTTGGAAAGA  98
      || |||| |||||||||||||||||||||||||||  ||||| |      
seq2  AC-TTCA-TATTTCACTATACAAAGTATTTCTTCA--CCAGTGG------  86

seq1  AAACAAAAAAAAAATTCAAAG-AATATCTA-TCTATACCTCTTCAAAATA  146
        |  |   ||| | |||||| |||||||| |||||||||||||||||||
seq2  --ATGAGCCAAAGACTCAAAGAAATATCTATTCTATACCTCTTCAAAATA  134

seq1  ACTCCGAATGTTTAAATTTCTGGATGCTCCACATTATTTATTTTCTATAT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCGAATGTTTAAATTTCTGGATGCTCCACATTATTTATTTTCTATAT  184

seq1  TTGTTGGTTATTTCTTGGTACCTGATAAGGACTAAGTGATAGCAAACGAG  246
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTGTTGGTTATTTCTTGGTA-CTGATAAGGACTAAGTGATAGCAAACGAG  233

seq1  TGGATTCAGCAATTGGGGAATCTTTAGTACATTCTGGAATAGTATATATT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCAGCAATTGGGGAATCTTTAGTACATTCTGGAATAGTATATATT  283

seq1  AAATAGATCTTCTAAACCAGAATGCAGTACTTAAATGAATTTCAAATAGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGATCTTCTAAACCAGAATGCAGTACTTAAATGAATTTCAAATAGA  333

seq1  CTTCCTTTATAGAACCACACTTTACTATGAGATCAATCCCTTGGTGTCCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTATAGAACCACACTTTACTATGAGATCAATCCCTTGGTGTCCT  383

seq1  TTAGTATACATTTAATTCATTCTCTTTCCCATGTATAAATGCAATTCTCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATACATTTAATTCATTCTCTTTCCCATGTATAAATGCAATTCTCA  433

seq1  TTACAGAACAAATCATTCGATTTCTTTTCATTGCTCTGCATTTGCAGCAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAACAAATCATTCGATTTCTTTTCATTGCTCTGCATTTGCAGCAA  483

seq1  CTATATTGTATAGCTCTTTTGACTCTCTCTTATTAAAATTGGATTCAGTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTGTATAGCTCTTTTGACTCTCTCTTATTAAAATTGGATTCAGTT  533

seq1  CAATATAATCTCAAATCTATTTAATTATCATTTAGTTCATTTTTAATAAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATAATCTCAAATCTATTTAATTATCATTTAGTTCATTTTTAATAAT  583

seq1  CTGGCTAGTGATTAGAAGTAGATTCCCAATGTAATAGTATAAGTTGATTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTAGTGATTAGAAGTAGATTCCCAATGTAATAGTATAAGTTGATTG  633

seq1  GACTTACAAAGAGCAATGACTATAAGTGGTCTCTCACTCATTCTAACAAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTACAAAGAGCAATGACTATAAGTGGTCTCTCACTCATTCTAACAAC  683

seq1  TCCATCTTCTTTATGACATCTTTAAAGTCAGTTTGGTTTTCCACCTGCAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTCTTTATGACATCTTTAAAGTCAGTTTGGTTTTCCACCTGCAT  733

seq1  TTGCTTTTCTCCCTTGCTCATCTTCCTTGACTTTCTCCCACCCTCCTGTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTCTCCCTTGCTCATCTTCCTTGACTTTCTCCCACCCTCCTGTG  783

seq1  TCTGTTTTCTTCCTGATTTTTTCTGAGTTTATTTTTGTGGATACCTTTAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTCTTCCTGATTTTTTCTGAGTTTATTTTTGTGGATACCTTTAG  833

seq1  CAATCATTATATTGGTAGGTATGTGCAGTCCCAGTTTGGCTTTGGCTGAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATTATATTGGTAGGTATGTGCAGTCCCAGTTTGGCTTTGGCTGAA  883

seq1  GTCCCAGTTCAAATTTGAAGACTAACTTCAGCTTCGTTTTGGATTTTTCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGTTCAAATTTGAAGACTAACTTCAGCTTCGTTTTGGATTTTTCA  933

seq1  CTTCCTACTAGAACATTAGTAGAAATATTGGCAGTCCAATGGCTTGTGAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTACTAGAACATTAGTAGAAATATTGGCAGTCCAATGGCTTGTGAT  983

seq1  GGATAATGCAGATTGCATTCCCTATTGCAGTTCCCGTTTGTGTAGTTGTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAATGCAGATTGCATTCCCTATTGCAGTTCCCGTTTGTGTAGTTGTT  1033

seq1  GATTTCATCTCTATTAAGTAATCCAATCTCCTGAGCATATAAAGGTCTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCATCTCTATTAAGTAATCCAATCTCCTGAGCATATAAAGGTCTTT  1083

seq1  ACAGATTTATTGCTTCCTGTATTTTGAGGTGAATATTTTAGCTACTAATG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTTATTGCTTCCTGTATTTTGAGGTGAATATTTTAGCTACTAATG  1133

seq1  TCTTTAAGAATTC  1159
      |||||||||||||
seq2  TCTTTAAGAATTC  1146


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