BAC Information

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BAC

Clone NameB6Ng01-083G10
Chromosome5 (Build37)
Map Location 107,531,610 - 107,656,648
singlet/doubletdoublet
Overlap geneTgfbr3
Upstream geneLOC546882, LOC671295, 4930458A03Rik, Barhl2, EG666892, LOC100042389, Zfp644, LOC100042400, EG666922, Hfm1, Cdc7
Downstream geneLOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083G10.bB6Ng01-083G10.g
ACCDH897676DH897677
length1,1071,111
definitionDH897676|Mus musculus domesticus DNA, BAC clone: B6Ng01-083G10, 5' end.DH897677|Mus musculus domesticus DNA, BAC clone: B6Ng01-083G10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,531,610 - 107,532,728)(107,655,520 - 107,656,648)
sequence
gaattctgatctggaagaaacaaaactagagccttccttcatatcacaca
catatggcttaagcatgtgtgccttccttcatatcacacatgcatggctt
aagcatgtgagccttccttcatatcatacatgtatgggttaagcatgtga
gccttccttcatatcatacatgtatgggttaagcatgcatccaaacctta
agagcaaaaatgacaggtgttaaggtgtgtctagagtcacagaatcccag
gagggacaagaagccaatggatacaagaaaaagatggatgaagccaacta
cctaaagtgacaagcaatgatccgggtgatatgtttatcatgaatagaag
agaaagataatggtatgaaagaaaacactggtcatacatgtgacacaaat
ctttcccaatgaaggttaaaaacaaaaacaaaagaaaccaaactactcat
tagaaaaatggacagaccccccctccccccagcagaggcggtgcagatgg
ttagcagatggctgctcaacaagaaagagtgggtctcctttaaagatgtg
atccttggtaggctgacagtcggctattaaacatagcgagggagggaggg
agctagtgtagaactaggagactaggtcagcgggagcagtgagaggctga
gtctgattaaaacacatcatacctatgaaattctcagaaattaatagact
agatttccaagaggagttgggggaggggtgagtatgatcaaaaattgcct
gaaattctcagagttaataaaaaatattctaaaatatcatcatatgaaaa
agaaaaaaaaacagcagagaaattagaaatgtacagaatgattctggaaa
aggccattataaaatagtttagaactcaccattagtgcaaataatctcaa
tatgagataaagctgcacccataatgttcccaaagctcacacagcatgta
actctggtgatggcaggagatgcttttattaagctattaatctacctcaa
gaacttctgtagattatctcatttaatattccagaaatgtgaaagtaatt
ttttaaaaaattttagttaagggatggctaatccacaggtggtaggccaa
gatctaa
gaattcaggaaaaaatacaataagtcattttcagaatgctcaaaatattt
aagctggccaaaaagcaattatgcattagtatgtgttaggtaattttcca
tttaaaaacatgaccaaagttacattagtaaagttcagtttggtggggtt
ttgctaatgtgtaacatggtgggaagtatttcagatatgaaatactgaga
gaagaaatcaataatatttcaaatcatagatattaccttaatctcatttt
ctgttcagatcttacaaacaaaacccttttgtggtagggtttggtgtgca
aagcatttttgtttttaggtcggaccatttgaaagtctgcatgtgagaaa
atgtgggttcccgctggcagagtcagtgacttccctccttcactcgggag
gaaaagaagccgcttgatccagagtggaaaaacactgaagaaaaatcccc
cccaaataacacccacagattttagaaaaacagaaattgctttgactgat
gtgacacacttaaaaatatatccagaagcacggctccagcgttgatgcag
caaggcaaccggtcttgaaaaggtgctttgtgcgccaccgggcatgtaac
ccactgtgcggtgtccccatgagcatgctcagtagctgccttgtgggaca
ggtatcccatttacctcgtgtttaaatttgggggaagatttttattaaca
acaagacaataatttctgtaaaatgactccccaaagccactcctcctttg
tagagtgactatcaggtctcttacatttaaatctaggaaaatattccctg
gcctaagagcatgttttgttccttttgacgggatccatgcaaccgtcata
tttttagtgatcttggttaatggttcgttgctgggtttgatttcttagac
ggatttcttaacagattttctatcttgccacctgactttgaattgattgc
agcctgacgtgggctttctgggatttgttgttgtattgtcgagttctttg
atccttcgagaaataagtatacgagcaataagagaatatttaaagattca
gaaatttttacatgaaacttagtcccgtttagactaatattgtacagacc
tttgagggtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_107531610_107532728
seq2: B6Ng01-083G10.b_44_1150

seq1  GAATTCTGATCTGGAAGAAACAAAACTAGAGCCTTCCTTCATATCACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATCTGGAAGAAACAAAACTAGAGCCTTCCTTCATATCACACA  50

seq1  CATATGGCTTAAGCATGTGTGCCTTCCTTCATATCACACATGCATGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGCTTAAGCATGTGTGCCTTCCTTCATATCACACATGCATGGCTT  100

seq1  AAGCATGTGAGCCTTCCTTCATATCATACATGTATGGGTTAAGCATGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGTGAGCCTTCCTTCATATCATACATGTATGGGTTAAGCATGTGA  150

seq1  GCCTTCCTTCATATCATACATGTATGGGTTAAGCATGCATCCAAACCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCTTCATATCATACATGTATGGGTTAAGCATGCATCCAAACCTTA  200

seq1  AGAGCAAAAATGACAGGTGTTAAGGTGTGTCTAGAGTCACAGAATCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAAAATGACAGGTGTTAAGGTGTGTCTAGAGTCACAGAATCCCAG  250

seq1  GAGGGACAAGAAGCCAATGGATACAAGAAAAAGATGGATGAAGCCAACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGACAAGAAGCCAATGGATACAAGAAAAAGATGGATGAAGCCAACTA  300

seq1  CCTAAAGTGACAAGCAATGATCCGGGTGATATGTTTATCATGAATAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGTGACAAGCAATGATCCGGGTGATATGTTTATCATGAATAGAAG  350

seq1  AGAAAGATAATGGTATGAAAGAAAACACTGGTCATACATGTGACACAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATAATGGTATGAAAGAAAACACTGGTCATACATGTGACACAAAT  400

seq1  CTTTCCCAATGAAGGTTAAAAACAAAAACAAAAGAAACCAAACTACTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCAATGAAGGTTAAAAACAAAAACAAAAGAAACCAAACTACTCAT  450

seq1  TAGAAAAATGGACAGACCCCCCCTCCCCCCAGCAGAGGCGGTGCAGATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAATGGACAGACCCCCCCTCCCCCCAGCAGAGGCGGTGCAGATGG  500

seq1  TTAGCAGATGGCTGCTCAACAAGAAAGAGTGGGTCTCCTTTAAAGATGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGATGGCTGCTCAACAAGAAAGAGTGGGTCTCCTTTAAAGATGTG  550

seq1  ATCCTTGGTAGGCTGACAGTCGGCTATTAAACATAGCGAGGGAGGGAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGGTAGGCTGACAGTCGGCTATTAAACATAGCGAGGGAGGGAGGG  600

seq1  AGCTAGTGTAGAACTAGGAGACTAGGTCAGCGGGAGCAGTGAGAGGCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGTGTAGAACTAGGAGACTAGGTCAGCGGGAGCAGTGAGAGGCTGA  650

seq1  GTCTGATTAAAACACATCATACCTATGAAATTCTCAGAAATTAATAGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATTAAAACACATCATACCTATGAAATTCTCAGAAATTAATAGACT  700

seq1  AGATTTCCAAGAGGAGTTGGGGGAGGGGTGAGTATGATCAAAAATTGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCCAAGAGGAGTTGGGGGAGGGGTGAGTATGATCAAAAATTGCCT  750

seq1  GAAATTCTCAGAGTTAATAAAAAATATTCTAAAATATCATCATATGAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCTCAGAGTTAATAAAAAATATTCTAAAATATCATCATATGAAAA  800

seq1  AGAAAAAAAAACAGGCAGAGAAATTAGAAATGTACAGAATGA-TCTGGAA  849
      ||||||||||||| |||||||||||||||||||||||||||| |||||||
seq2  AGAAAAAAAAACA-GCAGAGAAATTAGAAATGTACAGAATGATTCTGGAA  849

seq1  AAGGCCATTATAAAATAGTTTAGAACTCACCATTAGTGCAAATAATCTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCATTATAAAATAGTTTAGAACTCACCATTAGTGCAAATAATCTCA  899

seq1  ATAATGAGATAAAGCTGCACCCATTATGTTGCCAAAGCTCACACAGCATG  949
      || ||||||||||||||||||||| ||||| |||||||||||||||||||
seq2  AT-ATGAGATAAAGCTGCACCCATAATGTTCCCAAAGCTCACACAGCATG  948

seq1  TAACTCTGGTGATGGCAGGAGATGCTTTTATTAAGCTATTATTCTACCTC  999
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAACTCTGGTGATGGCAGGAGATGCTTTTATTAAGCTATTAATCTACCTC  998

seq1  AAGAACTTCATGTAGATTATCTCATTTAATATTCACAGAAATGTTGAAAA  1049
      ||||||||| |||||||||||||||||||||||| |||||||||   |||
seq2  AAGAACTTC-TGTAGATTATCTCATTTAATATTC-CAGAAATGT--GAAA  1044

seq1  GTATATTTTTTTAAAAAAAATTTTAAGTTAAGGGATGGCTTATCCAACAA  1099
      ||| |||||||   |||||||||| ||||||||||||||| |||| ||| 
seq2  GTA-ATTTTTT---AAAAAATTTT-AGTTAAGGGATGGCTAATCC-ACAG  1088

seq1  GTGGTAGGGCCAAGATCTAA  1119
      |||||| |||||||||||||
seq2  GTGGTA-GGCCAAGATCTAA  1107

seq1: chr5_107655520_107656648
seq2: B6Ng01-083G10.g_69_1179 (reverse)

seq1  AGACCCTCAAAGGTCATGTATCAATACTAGTCTAAACGGGGGCCTTAAGT  50
      ||||||||||||||| |||| ||||| |||||||||||||     |||||
seq2  AGACCCTCAAAGGTC-TGTA-CAATATTAGTCTAAACGGG---ACTAAGT  45

seq1  TTCACTGCTAGAAAATTCCTGATCTTTTACATATTCTCTTATTGCTCGTA  100
      |||| || || |||||| ||||   |||| ||||||||||||||||||||
seq2  TTCA-TG-TA-AAAATTTCTGAATCTTTAAATATTCTCTTATTGCTCGTA  92

seq1  TACTTATTTCTACGAAAGAAATCAAAGAACTCAGAACAATAACAACAACA  150
      ||||||||||| |||| |  ||||||||||||   ||||| |||||||||
seq2  TACTTATTTCT-CGAAGG--ATCAAAGAACTC--GACAAT-ACAACAACA  136

seq1  AATCCAAGAAAGCCCACGTCA-GCTGCAATCAATTCAAAGTCATGCTGGC  199
      ||||| ||||||||||||||| ||||||||||||||||||||| | ||||
seq2  AATCCCAGAAAGCCCACGTCAGGCTGCAATCAATTCAAAGTCA-GGTGGC  185

seq1  AAGATAGAAATCTTGTTAAG-AATCCGTCTAAAGAAATCAAACCCAGCAA  248
      ||||||||||   ||||||| ||||||||| |||||||||||||||||||
seq2  AAGATAGAAAATCTGTTAAGAAATCCGTCT-AAGAAATCAAACCCAGCAA  234

seq1  CGAACCATTAACCAAGATCACCTAAAAATATGACGGTTGCATGGATCCCG  298
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CGAACCATTAACCAAGATCA-CTAAAAATATGACGGTTGCATGGATCCCG  283

seq1  TCAAAAGGAAACAAACATGCTCTTAGGCCAGGGAAATATTTTTCCTAGAT  348
      ||||||||||  ||||||||||||||||||||| |||| |||||||||||
seq2  TCAAAAGGAACAAAACATGCTCTTAGGCCAGGG-AATA-TTTTCCTAGAT  331

seq1  TTAAATGTAAGAGACCTGATAGTCACTCTACAAAGGAGGAGTGGCTTTGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGTAAGAGACCTGATAGTCACTCTACAAAGGAGGAGTGGCTTTGG  381

seq1  GGAGTCATTTTACAGAAATTATTGTCTTGTTGTTTAATAAAAATCTTCCC  448
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGAGTCATTTTACAGAAATTATTGTCTTGTTG-TTAATAAAAATCTTCCC  430

seq1  CCAAATTTAAACACGAGGTAAATGGGATACCTGTCCCACAAGGCAGCTAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTTAAACACGAGGTAAATGGGATACCTGTCCCACAAGGCAGCTAC  480

seq1  TGAGCATGCTCATGGGGACACCGCACAGTGGGTTACATGCCCGGTGGCGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATGCTCATGGGGACACCGCACAGTGGGTTACATGCCCGGTGGCGC  530

seq1  ACAAAGCACCTTTTCAAGACCGGTTGCCTTGCTGCATCAACGCTGGAGCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCACCTTTTCAAGACCGGTTGCCTTGCTGCATCAACGCTGGAGCC  580

seq1  GTGCTTCTGGATATATTTTTAAGTGTGTCACATCAGTCAAAGCAATTTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCTGGATATATTTTTAAGTGTGTCACATCAGTCAAAGCAATTTCT  630

seq1  GTTTTTCTAAAATCTGTGGGTGTTATTTGGGGGGGATTTTTCTTCAGTGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTAAAATCTGTGGGTGTTATTTGGGGGGGATTTTTCTTCAGTGT  680

seq1  TTTTCCACTCTGGATCAAGCGGCTTCTTTTCCTCCCGAGTGAAGGAGGGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCACTCTGGATCAAGCGGCTTCTTTTCCTCCCGAGTGAAGGAGGGA  730

seq1  AGTCACTGACTCTGCCAGCGGGAACCCACATTTTCTCACATGCAGACTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTGACTCTGCCAGCGGGAACCCACATTTTCTCACATGCAGACTTT  780

seq1  CAAATGGTCCGACCTAAAAACAAAAATGCTTTGCACACCAAACCCTACCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGTCCGACCTAAAAACAAAAATGCTTTGCACACCAAACCCTACCA  830

seq1  CAAAAGGGTTTTGTTTGTAAGATCTGAACAGAAAATGAGATTAAGGTAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGGTTTTGTTTGTAAGATCTGAACAGAAAATGAGATTAAGGTAAT  880

seq1  ATCTATGATTTGAAATATTATTGATTTCTTCTCTCAGTATTTCATATCTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGATTTGAAATATTATTGATTTCTTCTCTCAGTATTTCATATCTG  930

seq1  AAATACTTCCCACCATGTTACACATTAGCAAAACCCCACCAAACTGAACT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTTCCCACCATGTTACACATTAGCAAAACCCCACCAAACTGAACT  980

seq1  TTACTAATGTAACTTTGGTCATGTTTTTAAATGGAAAATTACCTAACACA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAATGTAACTTTGGTCATGTTTTTAAATGGAAAATTACCTAACACA  1030

seq1  TACTAATGCATAATTGCTTTTTGGCCAGCTTAAATATTTTGAGCATTCTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATGCATAATTGCTTTTTGGCCAGCTTAAATATTTTGAGCATTCTG  1080

seq1  AAAATGACTTATTGTATTTTTTCCTGAATTC  1129
      |||||||||||||||||||||||||||||||
seq2  AAAATGACTTATTGTATTTTTTCCTGAATTC  1111