BAC Information

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BAC

Clone NameB6Ng01-083M02
Chromosome5 (Build37)3 (Build37)
Map Location 18,084,511 - 18,084,577133,391,728 - 133,392,458
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083M02.bB6Ng01-083M02.g
ACCDH897927DH897928
length924731
definitionDH897927|Mus musculus domesticus DNA, BAC clone: B6Ng01-083M02, 5' end.DH897928|Mus musculus domesticus DNA, BAC clone: B6Ng01-083M02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,511 - 18,084,577)(133,391,728 - 133,392,458)
sequence
gaattctcacccgaggaataccgaatggctgagaagcaccagaaaaaatt
gttctacatccttaatcatcagggaaatggaaatcaaaacaaccctgaga
ttccacctaacaccagtcagaatggctaagatcaaaagttcacgtgacag
cagatgctggtcaggatgtggagaaagaagaacactcctccattgttggt
ggaattgcaagtttgtacaaccagtctggaaatcagtcaggtggttcctc
agaaaattggacatagtactaccggaggatcccgcaatacctctcctggg
catatatccaaaagatgttccaactggtaataataacacatgctccacta
tgttcatagcagccttatttatagtagccagaagctggaaagaacccaga
tgtccctctaacagaggaatggatacagaaaatgtggtacatttacacaa
tggagtactactcagctattaaaaacaatgaaattatgaaattcctaggc
aaatggatggagctggagggcatcatcctgagtgaggtaaccaaatcaca
aaagaactcatatgatatacactcactgctaagtggatattagcccagat
acttaggatatccaagatacaatttgtaaaacacatgaaactcaagtaga
agaaagaccaaagtgtggacactttgccccttgttagaattgggaacaaa
acacccatggaaggagttacagagataaagtttggagctgagacaaaagg
atggaccatccagagactgccccacacagggtccatcccacaatcagcca
acaaacacagacactattgcatatgccagcaggattttgctgaaaggacc
ctgatatagctgtctcttgtgaggctaagctggtgcctggcaaacacaga
agtggatgctcacagtcagctatt
gaattctctctgtgagttcacctaggtgtcttcttaattaatatgaatat
tattcatgtttaattaattaaacacatctgtatgaaaagtcttcatagat
ttgtggtaaagttagcttttttggtgtaatagtctctgttttgttgtttt
cagtgattgtgtaacttggttaaagctttcaccattttgagatttgttat
ccttttttttttttcatcaatttaaatcacttggtaataccttctacatc
tttatatgaaatgtgggcactgtgggagttgtttattacagcgacaaagt
gactcctacgcttatgaaagaaggcatatgggatatatctacaaagagtt
acacatgtgctggagaaagcaaggacagttgtgcccgtgttcctttccca
tagggaaggataagaatgtggtgtttcatgccggggcctagcaaacacag
aagtggatgctcatagtcagctaatggatggatcacagggctcccaatgg
aggagctagagaaagtacccaaggagctaaagggatctgcaaccctatag
gtggaacaacattatgaactaaccagtaccccggagctcttgactctagc
tgcatatgtatcaaaagatggcctagtcggccatcactggaaagaaaggc
ctattggacacgcaaactttatatgccccagtacaggggaacgccagggc
caaaaagggggagtgggtgggtaggggagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084511_18084577
seq2: B6Ng01-083M02.b_360_426 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      |||||||||| |||||||||||||||||||||||||||||||||||||| 
seq2  CTTCTGGCTACTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTT  50

seq1  CTTCTTACCAGTTGGAA  67
       || |||||||||||||
seq2  ATTATTACCAGTTGGAA  67

seq1: chr3_133391728_133392458
seq2: B6Ng01-083M02.g_69_799

seq1  GAATTCTCTCTGTGAGTTCACCTAGGTGTCTTCTTAATTAATATGAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTGTGAGTTCACCTAGGTGTCTTCTTAATTAATATGAATAT  50

seq1  TATTCATGTTTAATTAATTAAACACATCTGTATGAAAAGTCTTCATAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATGTTTAATTAATTAAACACATCTGTATGAAAAGTCTTCATAGAT  100

seq1  TTGTGGTAAAGTTAGCTTTTTTGGTGTAATAGTCTCTGTTTTGTTGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTAAAGTTAGCTTTTTTGGTGTAATAGTCTCTGTTTTGTTGTTTT  150

seq1  CAGTGATTGTGTAACTTGGTTAAAGCTTTCACCATTTTGAGATTTGTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATTGTGTAACTTGGTTAAAGCTTTCACCATTTTGAGATTTGTTAT  200

seq1  CCTTTTTTTTTTTTCATCAATTTAAATCACTTGGTAATACCTTCTACATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTTTTTTTTCATCAATTTAAATCACTTGGTAATACCTTCTACATC  250

seq1  TTTATATGAAATGTGGGCACTGTGGGAGTTGTTTATTACAGCGACAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGAAATGTGGGCACTGTGGGAGTTGTTTATTACAGCGACAAAGT  300

seq1  GACTCCTACGCTTATGAAAGAAGGCATATGGGATATATCTACAAAGAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTACGCTTATGAAAGAAGGCATATGGGATATATCTACAAAGAGTT  350

seq1  ACACATGTGCTGGAGAAAGCAAGGACAGTTGTGCCCGTGTTCCTTTCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGTGCTGGAGAAAGCAAGGACAGTTGTGCCCGTGTTCCTTTCCCA  400

seq1  TAGGGAAGGATAAGAATGTGGTGTTTCATGCCGGGGCCTAGCAAACACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAGGATAAGAATGTGGTGTTTCATGCCGGGGCCTAGCAAACACAG  450

seq1  AAGTGGATGCTCATAGTCAGCTAATGGATGGATCACAGGGCTCCCAATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGATGCTCATAGTCAGCTAATGGATGGATCACAGGGCTCCCAATGG  500

seq1  AGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAG  550

seq1  GTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGC  600

seq1  TGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAAAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAAAGGC  650

seq1  CTATTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGC  700

seq1  CAAAAAGGGGGAGTGGGTGGGTAGGGGAGTG  731
      |||||||||||||||||||||||||||||||
seq2  CAAAAAGGGGGAGTGGGTGGGTAGGGGAGTG  731