BAC Information

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BAC

Clone NameB6Ng01-083P13
Chromosome5 (Build37)
Map Location 116,708,422 - 116,862,910
singlet/doubletdoublet
Overlap geneCcdc60, 4930562A09Rik, Hspb8
Upstream geneRnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032, Cit, Prkab1, LOC545798
Downstream gene1500001A10Rik, LOC433943, Gm1684, LOC665073, Suds3, Taok3, Pebp1, LOC100042313, LOC100039359, BC023744, LOC667175, Wsb2, Rfc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083P13.bB6Ng01-083P13.g
ACCDH898072DH898073
length979868
definitionDH898072|Mus musculus domesticus DNA, BAC clone: B6Ng01-083P13, 5' end.DH898073|Mus musculus domesticus DNA, BAC clone: B6Ng01-083P13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,708,422 - 116,709,402)(116,862,043 - 116,862,910)
sequence
gaattctctagaggattatcaaccactgattcttttctctcaaagacttg
gcaccatacgggcttgaccttccagaggagagaggcttctgcaagatgcc
tgatgggtaatggcagcagtgggcatggactgtggcataattgcattccg
cctgtctcctacatttttctgggttgggcaccatttgtttcaaagctcct
gtcgtgtggccattaaatcaccgtttgctctgacagtgtcatttctgtaa
caccctggagggagcaggctgcactgtctctggatctggaacgctgccat
ttggtcatcatactgtctccaaaggcgctccttggatgcggctgaacgag
ggtcccccagatacactgctcctggagcccaccagtgctctgtgcatttg
caaagtggaattatcctggctggggagagtgcccactaggactgatttag
gagattagctctggcagatgggtgaaaagaaaacaagaaggcagggaaaa
tatctaccccacccccaatcagaatggctgctcccttcttggtgagagat
ggaagcaaaaattattcagacagggtctagtctaatagtagtctgagaag
gaatggctgagaacagggcggtcggctgagagttggagcatcagatgggt
ggtccagtgctctcagtaggtgtcctacagcccagttgtggaccgagatg
agcctggagagtattggatgaagcactacataaggcctgtttcttggaac
aattcattcattcattcattcattcattcattcattactcatgcattcac
tcactcacgagttcagcactggtggctacacttgctggcctttcatgcaa
gaagaccaacactaaacaagaacaggctcaagatggggatttgaggggac
tagatctgatgattgtttgcaaagtgtggacagtgtatggatctctctct
ctctctctctctctctctctctctcactc
gtgagtagatagatatgcctgaggttgctgaaggtggtgtagctactccg
ctgctggtggctgagctgttcccacatcgcctggctcgagggtctgtgcc
ctccgcctccagtccatgggatggtgctgcctacatcaggttctccctcc
cctccccgcccccgttcaattattccactccgcaacctccttctctaagg
accgaacacgccaatgatcaaggctgagcttcactgtgttgctaggacca
cccaaacctccttcaacaacaactggaggtccccagggtcttcctctatc
agcatggcatgctccatccattgtgaatggcccaagcccagcgtaccccc
taactctgttagtattttgattcccatcccgggtgtagagagcttccata
ttaagatataattaatggagccaggcagtggtggtgcacacctttgatcc
cagcacttgggtggcagaggcaggtggatttctgagttcgaggccagcct
ggtctacagagtgagttccagagaaactctgtctcaaaaaacaaaacaaa
caaacaaaaacacaaagaaacaagcaaaaaagatacaattagtgggtgac
ttagagcaactcgggtagccgccctgagcttgcatcctctcccacgtgtg
gccatgttagagagttggaggactacacagtaaactgtttggtggaaggg
gggattaatattattaactgaccccccccccacaaggtggagttacacaa
gagtggctttgacaaatgggagatatcaaggcgtccaactggagactggg
ataaccctgggccagatccctatatagagcccaccaatgatgatggtgat
gatggttggtggtggtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_116708422_116709402
seq2: B6Ng01-083P13.b_43_1021

seq1  GAATTCTCTAGAGGATTATCAACCACTGATTCTTTTCTCTCAAAGACTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGAGGATTATCAACCACTGATTCTTTTCTCTCAAAGACTTG  50

seq1  GCACCATACGGGCTTGACCTTCCAGAGGAGAGAGGCTTCTGCAAGATGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATACGGGCTTGACCTTCCAGAGGAGAGAGGCTTCTGCAAGATGCC  100

seq1  TGATGGGTAATGGCAGCAGTGGGCATGGACTGTGGCATAATTGCATTCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGTAATGGCAGCAGTGGGCATGGACTGTGGCATAATTGCATTCCG  150

seq1  CCTGTCTCCTACATTTTTCTGGGTTGGGCACCATTTGTTTCAAAGCTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCCTACATTTTTCTGGGTTGGGCACCATTTGTTTCAAAGCTCCT  200

seq1  GTCGTGTGGCCATTAAATCACCGTTTGCTCTGACAGTGTCATTTCTGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTGTGGCCATTAAATCACCGTTTGCTCTGACAGTGTCATTTCTGTAA  250

seq1  CACCCTGGAGGGAGCAGGCTGCACTGTCTCTGGATCTGGAACGCTGCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGGAGGGAGCAGGCTGCACTGTCTCTGGATCTGGAACGCTGCCAT  300

seq1  TTGGTCATCATACTGTCTCCAAAGGCGCTCCTTGGATGCGGCTGAACGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCATCATACTGTCTCCAAAGGCGCTCCTTGGATGCGGCTGAACGAG  350

seq1  GGTCCCCCAGATACACTGCTCCTGGAGCCCACCAGTGCTCTGTGCATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCCCAGATACACTGCTCCTGGAGCCCACCAGTGCTCTGTGCATTTG  400

seq1  CAAAGTGGAATTATCCTGGCTGGGGAGAGTGCCCACTAGGACTGATTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGGAATTATCCTGGCTGGGGAGAGTGCCCACTAGGACTGATTTAG  450

seq1  GAGATTAGCTCTGGCAGATGGGTGAAAAGAAAACAAGAAGGCAGGGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTAGCTCTGGCAGATGGGTGAAAAGAAAACAAGAAGGCAGGGAAAA  500

seq1  TATCTACCCCACCCCCAATCAGAATGGCTGCTCCCTTCTTGGTGAGAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTACCCCACCCCCAATCAGAATGGCTGCTCCCTTCTTGGTGAGAGAT  550

seq1  GGAAGCAAAAATTATTCAGACAGGGTCTAGTCTAATAGTAGTCTGAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAAAAATTATTCAGACAGGGTCTAGTCTAATAGTAGTCTGAGAAG  600

seq1  GAATGGCTGAGAACAGGGCGGTCGGCTGAGAGTTGGAGCATCAGATGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGCTGAGAACAGGGCGGTCGGCTGAGAGTTGGAGCATCAGATGGGT  650

seq1  GGTCCAGTGCTCTCAGTAGGTGTCCTACAGCCCAGTTGTGGACCGAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAGTGCTCTCAGTAGGTGTCCTACAGCCCAGTTGTGGACCGAGATG  700

seq1  AGCCTGGAGAGTATTGGATGAAGCACTACATAAGGCCTGTTTCTTGGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGAGAGTATTGGATGAAGCACTACATAAGGCCTGTTTCTTGGAAC  750

seq1  AATTCATTCATTCATTCATTCATTCATTCATTCATTACTCATGCATTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATTCATTCATTCATTCATTCATTCATTCATTACTCATGCATTCAC  800

seq1  TCACTCACGAGTTCAGCACTGGTGGCTACACTTGCTGGCC-TTCATGCAA  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCACTCACGAGTTCAGCACTGGTGGCTACACTTGCTGGCCTTTCATGCAA  850

seq1  GAAGACCAACACTAAACAAGAACAGGCTCAAGATGGGGATTTGAGGGGAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCAACACTAAACAAGAACAGGCTCAAGATGGGGATTTGAGGGGAC  900

seq1  TAGATCTGATGATTGTTTGCAAAAGTGTGGACAAGGTGTATGGATCTCTC  949
      |||||||||||||||||||| ||||||||||||  |||||||||||||||
seq2  TAGATCTGATGATTGTTTGC-AAAGTGTGGACA--GTGTATGGATCTCTC  947

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  981
      |||||||||||||||||||||||||||| |||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCACTC  979

seq1: chr5_116862043_116862910
seq2: B6Ng01-083P13.g_77_944 (reverse)

seq1  CCACCACCACC-ACCATCATCACCATCATCATTGGTGGGCTCTATTATAG  49
      | ||||||||| |||||||||||||||||||||||||||||||| |||||
seq2  CTACCACCACCAACCATCATCACCATCATCATTGGTGGGCTCTA-TATAG  49

seq1  GGATCTGGCCCAGGGTTATCCCAGTCTCCAGTTGGACGCCTTGATATCTC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTGGCCCAGGGTTATCCCAGTCTCCAGTTGGACGCCTTGATATCTC  99

seq1  CCATTTGTCAAAGCCACTCTTGTGTAACTCCACCTTGTGGGGGGGGGGTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGTCAAAGCCACTCTTGTGTAACTCCACCTTGTGGGGGGGGGGTC  149

seq1  AGTTAATAATATTAATCCCCCCTTCCACCAAACAGTTTACTGTGTAGTCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATAATATTAATCCCCCCTTCCACCAAACAGTTTACTGTGTAGTCC  199

seq1  TCCAACTCTCTAACATGGCCACACGTGGGAGAGGATGCAAGCTCAGGGCG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTCTCTAACATGGCCACACGTGGGAGAGGATGCAAGCTCAGGGCG  249

seq1  GCTACCCGAGTTGCTCTAAGTCACCCACTAATTGTATCTTTTTTGCTTGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCCGAGTTGCTCTAAGTCACCCACTAATTGTATCTTTTTTGCTTGT  299

seq1  TTCTTTGTGTTTTTGTTTGTTTGTTTTGTTTTTTGAGACAGAGTTTCTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTGTTTTTGTTTGTTTGTTTTGTTTTTTGAGACAGAGTTTCTCT  349

seq1  GGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGC  399

seq1  CTCTGCCACCCAAGTGCTGGGATCAAAGGTGTGCACCACCACTGCCTGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCACCCAAGTGCTGGGATCAAAGGTGTGCACCACCACTGCCTGGC  449

seq1  TCCATTAATTATATCTTAATATGGAAGCTCTCTACACCCGGGATGGGAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTAATTATATCTTAATATGGAAGCTCTCTACACCCGGGATGGGAAT  499

seq1  CAAAATACTAACAGAGTTAGGGGGTACGCTGGGCTTGGGCCATTCACAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATACTAACAGAGTTAGGGGGTACGCTGGGCTTGGGCCATTCACAAT  549

seq1  GGATGGAGCATGCCATGCTGATAGAGGAAGACCCTGGGGACCTCCAGTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGAGCATGCCATGCTGATAGAGGAAGACCCTGGGGACCTCCAGTTG  599

seq1  TTGTTGAAGGAGGTTTGGGTGGTCCTAGCAACACAGTGAAGCTCAGCCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAAGGAGGTTTGGGTGGTCCTAGCAACACAGTGAAGCTCAGCCTT  649

seq1  GATCATTGGCGTGTTCGGTCCTTAGAGAAGGAGGTTGCGGAGTGGAATAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATTGGCGTGTTCGGTCCTTAGAGAAGGAGGTTGCGGAGTGGAATAA  699

seq1  TTGAACGGGGGCGGGGAGGGGAGGGAGAACCTGATGTAGGCAGCACCATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACGGGGGCGGGGAGGGGAGGGAGAACCTGATGTAGGCAGCACCATC  749

seq1  CCATGGACTGGAGGCGGAGGGCACAGACCCTCGAGCCAGGCGATGTGGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGACTGGAGGCGGAGGGCACAGACCCTCGAGCCAGGCGATGTGGGA  799

seq1  ACAGCTCAGCCACCAGCAGCGGAGTAGCTACACCACCTTCAGCAACCTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCAGCCACCAGCAGCGGAGTAGCTACACCACCTTCAGCAACCTCA  849

seq1  GGCATATCTATCTACTCAC  868
      |||||||||||||||||||
seq2  GGCATATCTATCTACTCAC  868