BAC Information

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BAC

Clone NameB6Ng01-084D19
Chromosome5 (Build37)
Map Location 139,091,003 - 139,091,813
singlet/doubletsinglet
Overlap genenone
Upstream geneHrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik
Downstream geneBC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146, C130050O18Rik, Gpr30, Zfand2a, Uncx4.1, LOC100041200, LOC100041209
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084D19.bB6Ng01-084D19.g
ACCDH898257DH898258
length8141,175
definitionDH898257|Mus musculus domesticus DNA, BAC clone: B6Ng01-084D19, 5' end.DH898258|Mus musculus domesticus DNA, BAC clone: B6Ng01-084D19, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtgtcaactaccagcctatagtattataagacatagccgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaat
agaagaccactgcttatggttctttgttagcacacatttctgtaatttaa
actgtgactcataatccatgattaataagtctgtttgaaaaccaacctca
agctacacagtggtggtatatttctttaatctcagcacttgggaggaaaa
ggcaggtggatctctatgtgtttggtccatagaactctagtctacagagt
tccaggacagccagggctatacagagaaaccccgtctcaaacaaacacca
aaaataaaataaaataagaaaaccaccacaacaacatcaagttctatgaa
ttgattctttcttccacagctctctgatacattggtacttacagaatatt
ctctaaattcctaggcactaagtcaattgttttgtcaagcaaagtgttgc
ttgtaatccaaaaacatataaggctgggcaggaagatcaagattgtgaga
ttgtctagagttatattaggagtttgaagacagccttggctatatatcaa
gccctcatctaaaataccaaacaaaaaatccaaaacaaacaaaaaaactg
ggctagggagatgactaggtaaagtgctttgccatgaggacccaagtttg
aatccccagaacccatataaagctggatgcagcttttattgctgtgcaga
gacattatgaccaaggcaactcttataaaaacaaaacaaaacaaaacaaa
acagttaattgggg
gaattcctaatcctgataaacagcttcagtgaagtagctggatataaaat
taactcaaataaatcaatctcctttctctacacaaaggataaacagactg
agaaagaaattagggaaacaacacccttcacattagtcacaaataatata
aaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataa
gaacttcaagtctctgaagaaagaaattgaagaacatctcagaagatgga
aagatctcccatgctcatggattggcaggattaatatagtaaaaatggct
atcctgccaaaagcagtctacagattcaatgcaatccccatcaaaatccc
aactcaattcttcactgagatagaaagggcaattagcaaattcatctgga
aaaataaaaaacctaggatagcaaaaactcttctcaacaataaaagaacc
tctggtggaatcaacatgcctgacattaagctgtactacagagcaattgt
gataaaaactgcatggtactggtacagtgatagacaggtaaatcaatgga
atagaattaaagacccagaaatgaacccacacacctatggtaacttgatc
ttttgacaagagaactaaaaccatccagtggaaaaaagacagcatttttc
aacaattggtgctggtacagctggcggttatcatgtagaagaatgtgaat
tgatcaattctttttttttttttttttttttttttggttttttgagaaaa
gggttctcttgtatagccctggctgtcctgtaaactcacttttttagacc
aggctgggcctctaatctataatcagcctgccttctgcctcccaagtgct
gggaatagaggcatgtgccaccacccccggcgaaattgatacaattctta
tctcccttgtacaagctcaagtctaagtggatctcagacctccactctag
taccagagacaatgaatttattagaggagaattatggcaaagcctcatga
tatgggccagggaaaccattctaacaagaacagccatgggcttgggctgt
aagatagtagattgacaaatggacctccataaattgcaaacttctgtagt
catagatcctgctatagacaaaaggccccacagtatggtaaagatttcca
caccctaatcgttatggacactatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_139091003_139091813
seq2: B6Ng01-084D19.b_46_859 (reverse)

seq1  CCCCAATTAACTGTTTTGTTTTGTTTTGTTTTGTTTTTATAAGAGTTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAATTAACTGTTTTGTTTTGTTTTGTTTTGTTTTTATAAGAGTTGCC  50

seq1  TTGGTCATAATGTCTCTGCACAGCAATAAAAGCTGCATCCAGCTTTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCATAATGTCTCTGCACAGCAATAAAAGCTGCATCCAGCTTTATAT  100

seq1  GGGTTCTGGGGATTCAAACTTGGGTCCTCATGGC-AAGCACTTTACCTAG  149
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGGTTCTGGGGATTCAAACTTGGGTCCTCATGGCAAAGCACTTTACCTAG  150

seq1  TCATCTCCCTAGCCCAGTTTTTTTGTTTGTTTTGGATTTTTTGTTTGGTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCCCTAGCCCAGTTTTTTTGTTTGTTTTGGATTTTTTGTTTGGTA  200

seq1  TTTTAGATGAGGGCTTGATATATAGCCAAGGCTGTCTTCAAACTCCTAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGATGAGGGCTTGATATATAGCCAAGGCTGTCTTCAAACTCCTAAT  250

seq1  ATAACTCTAGACAATCTCACAATCTTGATCTTCCTGCCCAGCCTTATATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTCTAGACAATCTCACAATCTTGATCTTCCTGCCCAGCCTTATATG  300

seq1  TTTTTGGATTACAAGCAACACTTTGCTTGACAAAACAATTGACTTAGTGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGATTACAAGCAACACTTTGCTTGACAAAACAATTGACTTAGTGC  350

seq1  CTAGGAATTTAGAGAATATTCTGTAAGTACCAATGTATCAGAGAGCTGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAATTTAGAGAATATTCTGTAAGTACCAATGTATCAGAGAGCTGTG  400

seq1  GAAGAAAGAATCAATTCATAGAACTTGATGTTGTTGTGGTGGTTTTCTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGAATCAATTCATAGAACTTGATGTTGTTGTGGTGGTTTTCTTA  450

seq1  TTTTATTTTATTTTTGGTGTTTGTTTGAGACGGGGTTTCTCTGTATAGCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTATTTTTGGTGTTTGTTTGAGACGGGGTTTCTCTGTATAGCC  500

seq1  CTGGCTGTCCTGGAACTCTGTAGACTAGAGTTCTATGGACCAAACACATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGTCCTGGAACTCTGTAGACTAGAGTTCTATGGACCAAACACATA  550

seq1  GAGATCCACCTGCCTTTTCCTCCCAAGTGCTGAGATTAAAGAAATATACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCACCTGCCTTTTCCTCCCAAGTGCTGAGATTAAAGAAATATACC  600

seq1  ACCACTGTGTAGCTTGAGGTTGGTTTTCAAACAGACTTATTAATCATGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGTGTAGCTTGAGGTTGGTTTTCAAACAGACTTATTAATCATGGA  650

seq1  TTATGAGTCACAGTTTAAATTACAGAAATGTGTGCTAACAAAGAACCATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGTCACAGTTTAAATTACAGAAATGTGTGCTAACAAAGAACCATA  700

seq1  AGCAGTGGTCTTCTATT--ACACACACACACACACACACACACACACACA  747
      |||||||||||||||||  |||||||||||||||||||||||||||||||
seq2  AGCAGTGGTCTTCTATTACACACACACACACACACACACACACACACACA  750

seq1  CACACACACACACACACACGGCTATGTCTTATAATACTATAGGCTGGTAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACGGCTATGTCTTATAATACTATAGGCTGGTAG  800

seq1  TTGACACTGAATTC  811
      ||||||||||||||
seq2  TTGACACTGAATTC  814